
RICPR00002	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin 1	Thioredoxin	Thioredoxin	TrxA protein	Thioredoxin	Probable thioredoxin 1 (Redox factor) protein	Thioredoxin 1	Highly similar to thioredoxin hypothetical protein	conserved gene RSc1188; probable thioredoxin 1	Highly similar to thioredoxin hypothetical protein	identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	Thioredoxin	thioredoxin	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	thioredoxin	Thioredoxin	Thioredoxin	THIOREDOXIN	Thioredoxin family protein	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 thioredoxin	Thioredoxin	Thioredoxin	Thioredoxin	
RICPR00003	O-ANTIGEN EXPORT SYSTEM ATP-BINDING PROTEIN RFBE	identified by similarity to EGAD:30976; match to protein family HMM PF00005 tagH protein, teichoic acid ABC transporter protein, putative	Teichoic acids export ATP-binding protein tagH	identified by similarity to SP:P24586; match to protein family HMM PF00005 capsular polysaccharide ABC transporter, ATP-binding protein	Putative uncharacterized protein	similar to BR0519, O-antigen export system ATP-binding protein RfbE RfbE, O-antigen export system ATP-binding protein RfbE	teichoic acid translocation ATP-binding protein	Ortholog of S. aureus MRSA252 (BX571856) SAR0647 teichoic acid ABC transporter ATP-binding protein	Similar to Myxococcus xanthus O-antigen export system ATP-binding protein RfbB SWALL:RFBB_MYXXA (SWALL:Q50863) (437 aa) fasta scores: E(): 2.3e-30, 48.92% id in 233 aa putative ABC transport ATP-binding subunit	putative ABC transport system, ATP-binding protein	teichoic acid translocation ATP-binding protein	identified by match to protein family HMM PF00005 O-antigen ABC transporter, ATP-binding protein	ABC transporter	Similar to Bacillus subtilis teichoic acid translocation ATP-binding protein TagH tagH SW:TAGH_BACSU (P42954) (527 aa) fasta scores: E(): 5.2e-42, 49.231% id in 260 aa, and to Lactococcus lactis teichoic acid ABC transporter ATP binding protein TagH TR:Q9CH26 (EMBL:AE006326) (466 aa) fasta scores: E(): 2e-36, 46.850% id in 254 aa teichoic acid ABC transporter ATP-binding protein	ABC-type polysaccharide/polyol phosphate transport system ATPase component	O-antigen export system ATP-binding protein RfbE	ATPase	identified by similarity to EGAD:30976; match to protein family HMM PF00005 tagH protein, teichoic acid ABC transporter protein, putative	similar to gi|57285664|gb|AAW37758.1| [Staphylococcus aureus subsp. aureus COL], percent identity 83 in 264 aa, BLASTP E(): e-126 teichoic acid ABC transporter ATP-binding protein	ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase	ABC transporter, ATPase subunit	ABC transporter related	ABC transporter-related protein	ABC transporter-like	putative O-antigen export ABC transporter,ATP-binding protein	ABC transporter ATPase	teichoic acid translocation ATP-binding protein identified by match to protein family HMM PF00005	teichoic acid translocation ATP-binding protein	ABC transporter related	
RICPR00004	O-ANTIGEN EXPORT SYSTEM PERMEASE PROTEIN RFBA	ABC transporter of LPS O-antigen, Wzm	conserved gene polysaccharide ABC transporter, permease protein	ABC transporter of LPS O-antigen, Wzm	Teichoic acid ABC transporter, permease protein	polysaccharide ABC transporter membrane-spanning protein	teichoic acid translocation permease protein	Glycosyl transferase	teichoic acid ABC transporter permease	ABC transporter, membrane component	Lipopolysaccharide ABC export system, permease protein	Similar to Pseudomonas aeruginosa membrane-spanning domain Msd Wzm SWALL:P72162 (EMBL:U63722) (265 aa) fasta scores: E(): 8.6e-21, 30.68% id in 277 aa, and to Myxococcus xanthus O-antigen export system permease protein RfbA SWALL:RFBA_MYXXA (SWALL:Q50862) (260 aa) fasta scores: E(): 1.2e-15, 26.83% id in 272 aa putative ABC transport integral membrane subunit	membrane subunit of LPS efflux transporter	teichoic acid translocation permease; teichoic acid ABC transporter, permease	teichoic acid translocation permease protein	identified by match to protein family HMM PF01061 lipopolysaccharide ABC export system, permease protein	ABC-2	ABC-2	O-antigen export system permease protein RfbA	Putative ABC-type polysaccharide/polyol phosphate export systems permease component	putative ABC-2 type transport system permease protein	ABC-type polysaccharide/polyol phosphate export systems permease component	ABC-2	ABC-2	ABC-2	predicted ABC-type polysaccharide/polyol phosphate export system, permease protein COG1682, pfam01061	ABC transporter permease component	ABC-2	ABC-2	

RICPR00006	Uncharacterized protein RP006	conserved hypothetical protein similar to NP_840932.1 hypothetical protein	Similar to sp|Q9ZED6|Y006_RICPR; Ortholog to ERWE_CDS_03230; Truncated version of ERWE_CDS_03230 Conserved hypothetical protein	NADPH-dependent glutamate synthase beta chain and related oxidoreductases	conserved hypothetical protein	NADPH-dependent glutamate synthase beta chain and related oxidoreductases	heme/FAD-binding domain protein identified by similarity to GB:CAD84769.1; match to protein family HMM PF00175; match to protein family HMM PF00970	conserved hypothetical protein identified by similarity to PIR:E97700; match to protein family HMM PF00175	Putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase	NADPH-dependent glutamate synthase beta chain	Putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase	Putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase	pyridine nucleotide-disulfide oxidoreductase family	Putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase	Putative uncharacterized protein	Putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase	
RICPR00007	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase	Residues 1 to 262 of 262 are 99 pct identical to residues 1 to 262 of a 262 aa protein from Escherichia coli K12 ref: NP_414723.1 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	UDP-N-acetylglucosamine acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl carrier protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-(Acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylglucosamine acyltransferase	IPR001451: Bacterial transferase hexapeptide repeat UDP-N-acetylglucosamine acetyltransferase	similar to Salmonella typhi CT18 acyl-[acyl-carrier-protein]:UDP-N- acetylglucosamine O-acyltransferase acyl-[acyl-carrier-protein]:UDP-N- acetylglucosamine O-acyltransferase	Similar to Chlamydia pneumoniae acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine O-acyltransferase LpxA or cpn0650 or cp0097 SWALL:LPXA_CHLPN (SWALL:Q9Z7Q4) (279 aa) fasta scores: E(): 2e-96, 84.94% id in 279 aa, and to Escherichia coli acyl-[acyl-carrier-protein]-udp-N-acetylglucosamine O-acyltransferase LpxA SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 1.9e-37, 45.31% id in 256 aa putative udp-n-acetylglucosamine acyltransferase	UDP-N-acetylglucosamine acyltransferase	similar to BR1151, acyl-(acyl-carrier-protein)--udp-n-acetylglucosamine o-acyltransferase LpxA, acyl-(acyl-carrier-protein)--udp-n-acetylglucosamine o-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam ineO-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucos am O-acyltransferase	UDP-N-acetylglucosamine acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme UDP-acetylglucosamine acyltransferase	
RICPR00008	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	Acyl carrier protein	Residues 32 to 182 of 182 are 99 pct identical to residues 1 to 151 of a 151 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285874.1 (3R)-hydroxymyristol acyl carrier protein dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	conserved gene (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein]dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by similarity to OMNI:NTL01BH3741; match to protein family HMM PF01377; match to protein family HMM PF03061; match to protein family HMM TIGR01750 (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase	(3R)-hydroxyacyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristol acyl carrier protein dehydrase	identified by match to protein family HMM PF03061; match to protein family HMM TIGR01750 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-ACP dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by similarity to SP:P21774; match to protein family HMM PF03061; match to protein family HMM TIGR01750 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabZ	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark (3r)-hydroxymyristoyl ACP dehydrase	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	
RICPR00009	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	Residues 1 to 341 of 341 are 100 pct identical to residues 1 to 341 of a 341 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285873.1 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	Similar to UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase hypothetical protein	conserved gene UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Similar to UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase hypothetical protein	UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase	identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853 UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase	IPR001451: Bacterial transferase hexapeptide repeat; IPR007691: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD UDP-3-O-(3-hydroxymyristoyl)-glucosamine n-acyltransferase	similar to Salmonella typhi CT18 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	Similar to Escherichia coli UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD SWALL:LPXD_ECOLI (SWALL:P21645) (340 aa) fasta scores: E(): 1.1e-32, 33.92% id in 339 aa, and to Pseudomonas aeruginosa UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD or pa3646 SWALL:LPXD_PSEAE (SWALL:Q9HXY6) (353 aa) fasta scores: E(): 4.3e-41, 39.31% id in 351 aa UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	similar to BR1153, UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase	putative assignment UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	
RICPR00010	Probable tRNA-dihydrouridine synthase	NifR3-like protein	Residues 1 to 321 of 321 are 99 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289828.1 putative dehydrogenase	Predicted oxidoreductase	tRNA-dihydrouridine synthase B	Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family	Putative trna-dihydrouridine synthase protein	Similar to putative dehydrogenase YhdG of Escherichia coli	Similar to tRNA-dihydrouridine synthase B hypothetical protein	conserved gene nitrogen regulation protein	Similar to tRNA-dihydrouridine synthase B hypothetical protein	Transcription regulator	tRNA-dihydrouridine synthase	nitrogen regulation protein NifR3 homolog	identified by similarity to SP:Q08111; match to protein family HMM PF01207; match to protein family HMM TIGR00737 tRNA-dihydrouridine synthase, putative	Regulatory gene required to sense and relay the nitrogen status	possible transcriptional regulator	Transcriptional regulator	identified by similarity to SP:P25717; match to protein family HMM PF01207 tRNA-dihydrouridine synthase B	Putative uncharacterized protein	tRNA-dihydrouridine synthase protein	Probable tRNA-dihydrouridine synthase	Mb0846c, -, len: 389 aa. Equivalent to Rv0823c, len: 389 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 389 aa overlap). Possible transcriptional regulator (resembles nitrogen regulation protein), equivalent (but longer 24 aa in N-terminus) to MLU15182_31|U15182|NtrB NtrB protein from Mycobacterium leprae (384 aa), FASTA scores: opt: 2070, E(): 0, (82.3% identity in 384 aa overlap) (see citation below). Also highly similar to CAB63312.1|AL133471|SCC82.03c hypothetical protein from Streptomyces coelicolor (406 aa); and to many transcriptional regulators members of UPF0034 FAMILY (NIFR3/SMM1) e.g. D26185|BAC180K_143 protein similar to transcriptional regulator (nitrogen regulation protein) from Bacillus subtilis (333 aa), FASTA scores: opt: 609, E(): 1.4e-32, (38.3% identity in 326 aa overlap); NP_349795.1|NC_003030 NifR3 family enzyme from Clostridium acetobutylicum (321 aa); etc. Contains PS01136 Uncharacterized protein family UPF0034 signature. POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN	Biological Process: tRNA processing (GO:0008033), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: FAD binding (GO:0050660) putative Dihydrouridine synthase TIM-barrel protein	tRNA-dihydrouridine synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	COG0042 tRNA-dihydrouridine synthase transcriptional regulator	Oxidoreductase	IPR001269: Protein of unknown function UPF0034; IPR003009: FMN/related compound-binding core; IPR004652: Putative TIM-barrel protein nifR3 putative TIM-barrel enzyme, possibly dehydrogenase	
RICPR00011	Uncharacterized protein RP012	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Polysaccharide deacetylase	Putative uncharacterized protein	
RICPR00012	UPF0079 ATP-binding protein RP013	Residues 1 to 153 of 153 are 100 pct identical to residues 1 to 153 of a 153 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290798.1 orf, conserved hypothetical protein	ATPase or Kinase	Predicted ATPase or kinase	Uncharacterised P-loop hydrolase UPF0079	Similar to ATP/GTP hydrolase	Similar to unknown protein YjeE of Escherichia coli	similar to conserved hypothetical protein hypothetical protein	conserved gene ATPase or kinase	similar to conserved hypothetical protein hypothetical protein	ATPase or kinase	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	Putative uncharacterized protein	Hypothetical protein SE1653	Putative uncharacterized protein	identified by similarity to OMNI:NTL01HP00650; match to protein family HMM PF02367; match to protein family HMM TIGR00150 conserved hypothetical protein TIGR00150	hypothetical protein	ATP/GTP hydrolase	putative ATPase or kinase	putative nucleotide-binding protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to Chlamydia pneumoniae YjeE hypothetical protein cpn0657 or cp0090 SWALL:Q9Z7P7 (EMBL:AE001648) (141 aa) fasta scores: E(): 3.2e-34, 63.12% id in 141 aa. conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2139 conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein	
RICPR00013	Uncharacterized protein RP014	Uncharacterized periplasmic metal-binding protein CT_415	Zinc ABC transporter substrate binding protein	ABC-type Zn2+ transport system, periplasmic component	Similar to sp|Q9RPX0|ZNUA_HAEDU sp|P39172|ZNUA_ECOLI sp|Q8ZEU2|ZNUA_YERPE sp|P44526|ZNUA_HAEIN; Ortholog to ERGA_CDS_02580 High-affinity zinc uptake system protein znuA	COG0803 ZnuA ABC-type Mn/Zn transport system periplasmic Mn/Zn-binding (lipo)protein (surface adhesin) similar to NP_541155.1 high-affinity zinc uptake system protein	Zinc ABC transporter, periplasmic zinc-binding protein ZnuA, putative	periplasmic zinc transporter	Similar to sp|Q9RPX0|ZNUA_HAEDU sp|P39172|ZNUA_ECOLI sp|Q8ZEU2|ZNUA_YERPE sp|P44526|ZNUA_HAEIN; Ortholog to ERWE_CDS_02610 High-affinity zinc uptake system protein znuA	Zinc/manganese ABC transporter substrate binding protein	Periplasmic solute binding protein	Zinc/manganese ABC transporter substrate binding protein	putative cation ABC transporter, periplasmic cation-binding protein identified by similarity to SP:P39172; match to protein family HMM PF01297	transcriptional regulator, XRE family	putative cation ABC transporter, periplasmic cation-binding protein identified by similarity to SP:P39172; match to protein family HMM PF01297	ABC transporter, substrate-binding protein identified by similarity to SP:Q8CWN2; match to protein family HMM PF01297	AfeA identified by match to protein family HMM PF01297	ABC-type metal ion transport system, periplasmic component/surface adhesin	Periplasmic solute binding protein precursor	Zinc ABC transporter substrate binding protein	metal transport system, metal-binding protein	putative Zinc ABC transporter ZnuA, periplasmic binding protein Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type t : transporter	Zinc ABC transporter substrate-binding protein	High-affinity zinc uptake system protein	Zinc/manganese ABC transporter substrate binding protein	Periplasmic solute binding protein precursor	Zinc/manganese ABC transporter substrate binding protein	Periplasmic solute binding protein precursor	Zinc/manganese ABC transporter substrate binding protein	
RICPR00014	POLY(A) POLYMERASE	Polynucleotide adenyltransferase-like protein	PolyA Polymerase	identified by match to protein family HMM PF01743 polyA polymerase family protein	CCA-adding enzyme	tRNA nucleotidyltransferase/poly(A) polymerase	Polynucleotide adenylyltransferase	Similar to rp||pcnB rc||pcnB; Ortholog to ERGA_CDS_08970 Poly(A) polymerase	tRNA nucleotidyltransferase	poly(A) polymerase	Poly(A) polymerase	Polynucleotide adenylyl transferase	similar to gi|27468063|ref|NP_764700.1| [Staphylococcus epidermidis ATCC 12228], percent identity 56 in 399 aa, BLASTP E(): e-129 putative poly-A polymerase	polyA polymerase family protein identified by similarity to SP:P42977; match to protein family HMM PF01743	tRNA nucleotidyl transferase, CCA-adding, 1 [Source:HGNC Symbol;Acc:17341]	Poly A polymerase family	Polynucleotide adenylyltransferase region	transcript_id=ENSDNOT00000008838	Poly(A) polymerase	Poly (A) polymerase EC 2.7.7.19	Polynucleotide adenylyltransferase	polyA polymerase/tRNA nucleotidyltransferase family protein identified by similarity to SP:P42977; match to protein family HMM PF01743	transcript_id=ENSFCAT00000009323	transcript_id=ENSEEUT00000009561	polyA polymerase family protein identified by match to protein family HMM PF01743	tRNA nucleotidyltransferase/poly(A) polymerase	tRNA-nucleotidyltransferase 1, mitochondrial Precursor (EC 2.7.7.25)(Mitochondrial tRNA nucleotidyl transferase, CCA-adding)(mt tRNA adenylyltransferase)(mt tRNA CCA-pyrophosphorylase)(mt tRNA CCA-diphosphorylase)(mt CCA-adding enzyme) [Source:UniProtKB/Swiss- Prot;Acc:Q96Q11]	polyA polymerase tRNA nucleotidyltransferase	




RICPR00018	ATP synthase subunit b	ATP synthase B chain precursor	ATP synthase F0, B subunit identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144	ATP synthase B chain	putative ATP synthase B chain precursor similarity:fasta; with=UniProt:ATPF_RHORU (EMBL:RRF0ATP); Rhodospirillum rubrum.; atpF;; ATP synthase B chain precursor (EC 3.6.3.14) (Subunit I). ATP synthase B chain precursor (EC 3.6.3.14) (Subunit I).; length=182; id 32.500; 160 aa overlap; query 3-162; subject 24-182 similarity:fasta; with=UniProt:Q92RM5 (EMBL:SME591785); Rhizobium meliloti (Sinorhizobium meliloti).; PROBABLE ATP SYNTHASE B CHAIN TRANSMEMBRANE PROTEIN (EC 3.6.1.34).; length=161; id 74.214; 159 aa overlap; query 4-162; subject 3-161	H+-transporting two-sector ATPase, B/B' subunit	ATP synthase subunit B	ATP synthase subunit b	ATP synthase F0, B subunit TIGRFAM: ATP synthase F0, B subunit PFAM: H+-transporting two-sector ATPase, B/B' subunit KEGG: mlo:mlr7415 F-type H+-transporting ATPase b chain	F0F1 ATP synthase subunit B	ATP synthase B chain	F0F1 ATP synthase subunit B	F0F1 ATP synthase subunit B	ATP synthase B chain	F0F1 ATP synthase subunit B	H+transporting two-sector ATPase B/B' subunit	ATP synthase F0, B subunit	ATP synthase subunit b	F0F1 ATP synthase subunit B	ATP synthase B chain	putative F0F1 ATP synthase, subunit b (atpF) Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe : putative enzyme	
RICPR00019	ATP SYNTHASE B CHAIN	ATP synthase protein	F0F1-type ATP synthase, subunit b	similar to BR0384, ATP synthase F0, B subunit, hypothetical ATP synthase F0, B subunit, hypothetical	ATP synthase subunit b 1	Old name Fo ATP Synthase Subunit b'; old EC 3.6.1.34 H+-transporting two-sector ATPase (subunit b')	ATP synthase B chain	H+-transporting two-sector ATPase, B/B' subunit	H+-transporting two-sector ATPase, B/B' subunit	ATP synthase B chain	H+-transporting two-sector ATPase, B/B' subunit	H+-transporting two-sector ATPase, B/B' subunit	H+-transporting two-sector ATPase, B/B' subunit	ATP synthase B' chain	ATP synthase F0, B' subunit	ATP synthase F0, B subunit TIGRFAM: ATP synthase F0, B subunit PFAM: H+-transporting two-sector ATPase, B/B' subunit KEGG: sth:STH87 ATP synthase B subunit	H+-transporting two-sector ATPase, B/B' subunit PFAM: H+-transporting two-sector ATPase, B/B' subunit KEGG: rpc:RPC_4814 H+-transporting two-sector ATPase, B/B' subunit	ATP synthase F0, B subunit family protein	H+-transporting two-sector ATPase, B/B' subunit PFAM: H+-transporting two-sector ATPase, B/B' subunit KEGG: mlo:mlr7413 FoF1 ATP synthase, subunit B	ATP synthase subunit B	Putative ATP synthase F0, B subunit	H+transporting two-sector ATPase B/B' subunit	F0F1 ATP synthase subunit B'	ATP synthase B chain	H+transporting two-sector ATPase B/B' subunit	F0F1 ATP synthase subunit B'	F0F1 ATP synthase subunit B'	H+transporting two-sector ATPase B/B' subunit	ATP synthase subunit B GO_component: proton-transporting two-sector ATPase complex [GO ID 0016469]; GO_function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [GO ID 0016820]; GO_process: ATP synthesis coupled proton transport [GO ID 0015986]	
RICPR00020	ATP synthase subunit c	identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260 ATP synthase F0, C subunit	ATP synthase C chain	ATP synthase protein	F0F1-type ATP synthase, subunit c	similar to BR0383, ATP synthase F0, C subunit AtpE, ATP synthase F0, C subunit	ATP synthase subunit C	Similar to ERGA_CDS_08790 ATP synthase C chain	COG0636 AtpE F0F1-type ATP synthase c subunit/Archaeal/vacuolar-type H+-ATPase subunit K ATP synthase C chain	archaeal/vacuolar-type K; COG0636 ATP synthase C chain	ATP synthase C chain	Old name Fo ATP Synthase Subunit C; old EC 3.6.1.34 H+-transporting two-sector ATPase (subunit C)	Similar to sp|Q9ZEC2|ATPL_RICPR sp|Q92JP1|ATPL_RICCN ATP synthase C chain	identified by sequence similarity; putative; ORF located using Blastx; COG0636; TC:3.A.2.1.2 ATP synthase C chain	ATP synthase C chain	H+-transporting two-sector ATPase, C subunit	H+-transporting two-sector ATPase, C subunit	Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit:H+-transporting two-sector ATPase, C subunit	ATP synthase C chain	Citation: Arch. Microbiol. 170 (5), 385-388 (1998) MEDLINE 99035763 PUBMED 9818357 FoF1 ATP synthase, subunit C	H+-transporting two-sector ATPase, C subunit	H+-transporting two-sector ATPase, C subunit	ATP synthase F0, C chain identified by match to protein family HMM PF00137	H+-transporting two-sector ATPase, C subunit	ATP synthase C chain	putative ATP synthase subunit C similarity:fasta; with=UniProt:O68818 (EMBL:AE009590); Brucella melitensis.; atpC; ATP synthase subunit C (ATP SYNTHASE C CHAIN) (EC 3.6.1.34).; length=75; id 97.333; 75 aa overlap; query 1-75; subject 1-75 similarity:fasta; with=UniProt:Q8G2E0 (EMBL:AE014291); Brucella suis.; atpE; ATP synthase F0, C subunit (EC 3.6.3.14).; length=75; id 97.333; 75 aa overlap; query 1-75; subject 1-75	H+-transporting two-sector ATPase, C subunit	H+-transporting two-sector ATPase, C subunit PFAM: H+-transporting two-sector ATPase, C subunit: (2.5e-11) KEGG: sil:SPO3235 ATP synthase F0, C subunit, ev=3e-29, 89% identity	
RICPR00021	ATP synthase subunit a	ATP synthase A chain transmembrane protein	ATP synthase subunit a	Residues 1 to 271 of 271 are 99 pct identical to residues 1 to 271 of a 271 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290377.1 membrane-bound ATP synthase, F0 sector, subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	ATP synthase a chain	ATP synthase A chain	ATP synthase subunit a	ATP synthase subunit a	Highly similar to H+-transporting ATP synthase chain a hypothetical protein	identified by similarity to EGAD:6316; match to protein family HMM PF00119; match to protein family HMM TIGR01131 ATP synthase F0, A subunit	ATP synthase A chain	identified by similarity to SP:P15012; match to protein family HMM PF00119; match to protein family HMM TIGR01131 ATP synthase F0, A subunit	ATP synthase subunit a	proton-translocating ATPase a subunit	ATP synthase subunit a	ATP synthase A chain	ATP synthase subunit a	ATP synthase subunit a	ATP synthase subunit a	F1F0-ATPase subunit a H+-transporting ATP synthase chain a	ATP synthase A chain	IPR000568: H+-transporting two-sector ATPase, A subunit membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly	F0F1-type ATP synthase, subunit a	similar to Salmonella typhi CT18 ATP synthase A chain ATP synthase A chain	ATP synthase subunit a	
RICPR00022	Uncharacterized protein RP024	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00023	Putative protein-disulfide oxidoreductase RP025	Thiol-disulfide oxidoreductase protein	InterProMatches:IPR001853; formation of disulfide bonds,Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Cellular Component: periplasmic space (sensu Gram-negative Bacteria) (GO:0030288) thiol-disulfide oxidoreductase	similar to BR0496, twin-arginine translocation signal domain protein twin-arginine translocation signal domain protein	Similar to rp||RP025 rc||RC0029; Ortholog to ERGA_CDS_07730 Conserved hypothetical protein	conserved hypothetical protein similar to NP_966778.1 hypothetical protein	Similar to rp||RP025 rc||RC0029; Ortholog to ERWE_CDS_07820 Conserved hypothetical protein	Protein-disulfide isomerase	conserved hypothetical protein	DSBA oxidoreductase:Twin-arginine translocation pathway signal	COG1651, DsbG, Protein-disulfide isomerase putative periplasmic thiol-disulphide interchange protein (DsbA family)	Protein-disulfide isomerase	thiol:disulfide interchange protein, DsbA family	Protein-disulfide isomerase	putative disulfide bond formation protein D similarity:fasta; with=UniProt:BDBD_BACSU (EMBL:C70041); Bacillus subtilis.; bdbD; Disulfide bond formation protein D precursor (Disulfide oxidoreductase D) (Thiol-disulfide oxidoreductase D).; length=222; id 24.324; 185 aa overlap; query 34-214; subject 43-219 similarity:fasta; with=UniProt:Q8UH83_AGRT5 (EMBL:H97456); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu0800 (AGR_C_1464p).; length=226; id 71.717; 198 aa overlap; query 17-214; subject 37-226	thiol:disulfide interchange protein, DsbA family KEGG: sil:SPO3446 thiol:disulfide interchange protein, DsbA family, ev=3e-80, 64% identity	Twin-arginine translocation pathway signal	conserved hypothetical protein identified by similarity to GB:AAS14712.1	Twin-arginine translocation pathway signal	conserved hypothetical protein identified by similarity to GB:AAS14712.1	Twin-arginine translocation pathway signal	DSBA-like thioredoxin domain protein	protein-disulfide isomerase COG1651 Protein-disulfide isomerase	DSBA oxidoreductase PFAM: DSBA oxidoreductase KEGG: sit:TM1040_2643 thiol:disulfide interchange protein, DsbA family	DSBA oxidoreductase PFAM: DSBA oxidoreductase KEGG: ade:Adeh_4049 DsbA oxidoreductase	thiol-disulfide oxidoreductase D, Putative	putative periplasmic thiol-disulphide interchange protein (DsbA family) KEGG: rsp:RSP_1464 putative periplasmic thiol-disulphide interchange protein (DsbA family)	Putative uncharacterized protein	Twin-arginine translocation signal domain protein	
RICPR00024	Putative uncharacterized protein RP026	Transcriptional regulator	identified by match to protein family HMM PF02559 transcriptional regulator, CarD family	Putative uncharacterized protein	Transcriptional regulator protein	POSSIBLE TRANSCRIPTION FACTOR	Mb3614c, -, len: 162 aa. Equivalent to Rv3583c, len: 162 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 162 aa overlap). Possible transcriptional factor, identical to Q9CCW7|ML0320 PUTATIVE TRANSCRIPTION FACTOR from Mycobacterium leprae (165 aa), FASTA scores: opt: 1004, E(): 6.1e-56, (97.55% identity in 162 aa overlap); and Q9ZBM8|MLCB1450.01c PUTATIVE TRANSCRIPTIONAL REGULATOR from Mycobacterium leprae (94 aa), FASTA scores: opt: 600, E(): 6e-31, (97.85% identity in 94 aa overlap). Also highly similar to others e.g. Q9L0Q9|SCD8A.05 from Streptomyces coelicolor (160 aa), FASTA scores: opt: 878, E(): 4.3e-48, (85.0% identity in 160 aa overlap); Q9K600|BH3935 from Bacillus halodurans (153 aa) FASTA scores: opt: 383, E(): 3.1e-17, (36.4% identity in 151 aa overlap); Q9KD36|BH1383 from Bacillus halodurans (164 aa) FASTA scores: opt: 305, E(): 2.4e-12, (33.55% identity in 164 aa overlap); etc. PUTATIVE TRANSCRIPTION FACTOR	Putative uncharacterized protein TTHA0168	similar to BR1766, transcriptional regulator, hypothetical hypothetical transcriptional regulator	Transcriptional factor regulator	similar to M. xanthus carD; COG1329 transcriptional regulator	Similar to Streptomyces coelicolor putative transcriptional factor regulator SCO4232 or SCD8A.05 SWALL:Q9L0Q9 (EMBL:AL160331) (160 aa) fasta scores: E(): 4.3e-32, 66.03% id in 159 aa, and to Myxococcus xanthus CarD protein SWALL:Q50887 (EMBL:Z56280) (316 aa) fasta scores: E(): 1.1e-09, 28.48% id in 158 aa putative CarD-family transcriptional regulator	Transcriptional regulator	putative transcription factor	putative CarD-like transcriptional regulator	Transcriptional regulator	Transcription factor CarD	identified by match to protein family HMM PF02559 transcriptional regulator, CarD family	Putative transcriptional regulator	putative CarD-like transcriptional regulator	Transcriptional regulator, CarD family	transcriptional regulator, CarD family	transcriptional regulator, CarD family	Transcriptional regulator	putative CarD family transcriptional regulator similarity:fasta; with=UniProt:Q92L29_RHIME (EMBL:SME591793); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc03874.; length=189; id 94.211; 190 aa overlap; query 1-190; subject 1-189	Transcriptional Regulator, CarD family	transcriptional regulator, CarD family	transcriptional regulator, CarD family PFAM: transcription factor CarD: (6.8e-33) KEGG: sil:SPO1420 transcriptional regulator, CarD family, ev=9e-83, 92% identity	probable transcriptional regulator protein, CarD family similar to AGR_C_5013p [Agrobacterium tumefaciens] Similar to swissprot:Q8UBT5 Putative location:bacterial cytoplasm Psort-Score: 0.3297; go_function: transcription factor activity [goid 0003700]; go_process: regulation of transcription, DNA-dependent [goid 0006355]	

RICPR00026	Uncharacterized protein RP028	
RICPR00027	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	Residues 1 to 357 of 357 are 99 pct identical to residues 1 to 357 of a 357 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290333.1 ssDNA and dsDNA binding, ATP binding	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	RecF recombinational DNA repair ATPase	conserved gene DNA recombination and repair protein ATPase RecF	RecF recombinational DNA repair ATPase	DNA replication and repair protein recF	identified by similarity to EGAD:33333; match to protein family HMM PF00470; match to protein family HMM PF02463; match to protein family HMM TIGR00611 DNA replication and repair protein RecF	DNA replication and repair protein RecF	DNA replication and repair protein RecF	identified by similarity to SP:P13456; match to protein family HMM TIGR00611 DNA replication and repair protein RecF	DNA repair and genetic recombination protein	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	DNA replication and repair protein recF	Mb0003, recF, len: 385 aa. Equivalent to Rv0003, len: 385 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 385 aa overlap). recF, DNA replication and repair protein (see citations below), equivalent to others Mycobacterial DNA replication and repair proteins e.g. NP_301131.1|NC_002677 from Mycobacterium leprae (385 aa); Q9L7L5|RECF_MYCPA from Mycobacterium avium subsp.  paratuberculosis (385 aa); P50916|RECF_MYCSM from Mycobacterium smegmatis (384 aa); etc. Also highly similar to others e.g. P36176|RECF_STRCO DNA REPLICATION AND REPAIR PROTEIN from Streptomyces coelicolor (373 aa); NP_440892.1|NC_000911 from Synechocystis sp. strain PCC 6803 (384 aa); NP_469352.1|NC_003212 from Listeria innocua (370 aa); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), PS00617 RecF protein signature 1, and PS00618 RecF protein signature 2. BELONGS TO THE RECF FAMILY. DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING PROTEIN)	InterProMatches:IPR001238; DNA repair and genetic recombination,Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) DNA repair RecF	DNA replication and repair protein RecF	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA replication and repair RecF protein	RecF DNA repair and genetic recombination protein	RecF protein	
RICPR00028	Uncharacterized protein RP030	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Recombination protein F	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00029	SCO2-like protein RP031	LmjF26.1970, predicted protein, len = 433 aa, probably sco1 protein homolog, mitochondrial precursor; predicted pI = 7.1671; good similarity to SCO1_HUMAN, sco1 protein homolog, mitochondrial precursor in Homo sapiens; contains a SCO1/SenC pfam domain electon transport protein SCO1/SCO2, putative	Sco1/SenC family protein	identified by match to protein family HMM PF02630 SCO1/SenC family protein	Electron transport protein SCO1/SenC	Electron transport protein SCO1/SenC	Sco2 protein precursor	Electron transport protein SCO1/SenC	Sco2 protein precursor	Electron transport protein SCO1/SenC precursor	electron transport protein SCO1/SenC	Electron transport protein SCO1/SenC precursor	SCO1/SenC family protein cytoplasmic protein	electron transport protein SCO1/SenC PFAM: electron transport protein SCO1/SenC KEGG: bur:Bcep18194_A4268 electron transport protein SCO1/SenC	SCO1/SenC family protein cytoplasmic protein	electron transport protein SCO1/SenC PFAM: electron transport protein SCO1/SenC KEGG: bcn:Bcen_0677 electron transport protein SCO1/SenC	SCO1/SenC family protein identified by match to protein family HMM PF02630	putative electron transport protein, Sco1/SenC family Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type c : carrier	Hypothetical protein	electron transport protein SCO1/SenC PFAM: electron transport protein SCO1/SenC KEGG: pat:Patl_4237 electron transport protein SCO1/SenC	electron transport protein SCO1/SenC PFAM: electron transport protein SCO1/SenC KEGG: nwi:Nwi_0144 electron transport protein SCO1/SenC	Electron transport protein SCO1/SenC precursor	Electron transport protein SCO1/SenC precursor	Sco2 protein	Electron transport protein SCO1/SenC precursor	Sco2 protein	Sco2 protein	cytochrome c oxidase Cu(A) center assembly protein	Electron transport protein SCO1/SenC	
RICPR00030	UPF0301 protein RP032	Putative uncharacterized protein	UPF0301 protein CT_211	identified by similarity to GB:BAC46757.1; match to protein family HMM PF02622 conserved hypothetical protein	Transcriptional regulator protein	Similar to Pseudomonas aeruginosa transcriptional regulator AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 1.4e-10, 31.57% id in 171 aa, and to Chlamydophila caviae transcriptional regulator, putative cca00630 SWALL:Q822P9 (EMBL:AE016996) (189 aa) fasta scores: E(): 2.3e-74, 93.65% id in 189 aa, and to Chlorobium tepidum hypothetical protein Ct0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 6.9e-23, 37.91% id in 182 aa conserved hypothetical protein	similar to BR0480, conserved hypothetical protein conserved hypothetical protein	UPF0301 protein BQ03640	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	UPF0301 protein MCA0413 1	COG1678 putative transcriptional regulator	Similar to Pseudomonas aeruginosa AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 8.2e-10, 30% id in 170 aa, and to Bacteroides thetaiotaomicron putative transcriptional regulator BT1078 SWALL:AAO76185 (EMBL:AE016930) (196 aa) fasta scores: E(): 1.8e-63, 80.1% id in 196 aa, and to Chlorobium tepidum hypothetical protein CT0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 5.6e-19, 34.27% id in 178 aa putative transcriptional regulator	UPF0301 protein PP_4995	Similar to Q8EBZ9 Conserved hypothetical protein from Shewanella oneidensis (187 aa). FASTA: opt: 386 Z-score: 477.0 E(): 1e-18 Smith-Waterman score: 386; 36.022 identity in 186 aa overlap ORF ftt0985 conserved hypothetical protein	putative transcriptional regulator	Transcriptional regulator	identified by match to protein family HMM PF02622 Uncharacterized ACR, COG1678	identified by match to protein family HMM PF02622 Uncharacterized ACR, COG1678	Protein of unknown function DUF179	Putative transcriptional regulator	Protein of unknown function DUF179	Protein of unknown function DUF179	Blast search reveals a conserved COG1678 domain (putative transcriptional regulator) conserved hypothetical protein	UPF0301 protein Saro_0683	protein of unknown function DUF179	conserved hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF02622	Protein of unknown function DUF179	protein of unknown function DUF179	
RICPR00031	Putative uncharacterized protein RP033	Putative colicin V production membrane protein	CvpA protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative colicin V production membrane protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	colicin V production protein Colicin V production protein (dedE protein) (Pur regulon 18 kDa protein),InterPro; Colicin V production protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative colicin V production membrane protein	
RICPR00032	Uncharacterized protein RP034	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00033	ACETOACETYL-COA REDUCTASE	conserved gene acetyoacetyl CoA reductase	Acetoacetyl-CoA reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	acetoacetyl-coA reductase	Acetoacetyl-CoA reductase	Citation: PMID: 12351234 FEMS Microbiol Lett. 2002 Sep 10;214(2):217-22. Short-chain dehydrogenase/reductase	Acetoacetyl-CoA reductase	acetoacetyl-CoA reductase identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01829	acetoacetyl-CoA reductase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Dehydrogenase with different specificities	3-oxoacyl-[acyl-carrier-protein] reductase	acetoacetyl-CoA reductase TIGRFAM: acetoacetyl-CoA reductase PFAM: short-chain dehydrogenase/reductase SDR; KR KEGG: rsp:RSP_0747 short-chain dehydrogenase/reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	3-oxoacyl-[acyl-carrier-protein] reductase	Acetyoacetyl CoA reductase	acetoacetyl-CoA reductase KEGG: cps:CPS_2625 acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	Acetoacetyl-CoA reductase	
RICPR00034	Chaperone protein clpB	Chaperone protein clpB	Residues 1 to 861 of 861 are 99 pct identical to residues 1 to 861 of a 861 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289147.1 heat shock protein	Chaperone protein clpB	Chaperone protein clpB	ATP-dependent serine proteinase, heat shock protein	Chaperone protein clpB	Chaperone protein clpB	endopeptidase Clp ATP-binding chain B (ClpB)	conserved gene ClpB protein	endopeptidase Clp ATP-binding chain B (ClpB)	Chaperone protein clpB	ATP-dependent serine proteinase-heat shock protein	ClpB protein	Chaperone protein clpB	Chaperone protein clpB	ATP dependant protease ClpB	Chaperone protein clpB	Chaperone protein clpB	Mb0391c, clpB, len: 848 aa. Equivalent to Rv0384c, len: 848 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 848 aa overlap). Probable clpB (alternate gene name: htpM), endopeptidase ATP-binding protein, chain B (EC 3.-.-.-), equivalent to AC32007.1|AL583925 heat shock protein from Mycobacterium leprae (848 aa). Also highly similar to others e.g.  P53532|CLPB_CORGL|1163118|AAB49540.1|U43536|CGU43536_1 CLPB PROTEIN (heat-inducible expression) from Corynebacterium glutamicum (852 aa), FASTA scores: opt: 4113, E(): 0, (74.5% identity in 846 aa overlap); T36551|4753885|CAB42048.1|AL049754|clpB|SCOEDB|SCH10.39c probable ATP-dependent proteinase ATP-binding chain from Streptomyces coelicolor (853 aa); P03815|CLPB_ECOLI|1788943|AAC75641.1|AE000345 CLPB PROTEIN (HEAT SHOCK PROTEIN F84.1) from Escherichia coli strains K12 and O157:H7 (857 aa); etc. Also similar to Rv3596c|ClpC from Mycobacterium tuberculosis. Contains PS00870 and PS00871 Chaperonins clpA/B signatures and two PS000017 ATP/GTP-binding site motives A (P-loop). BELONGS TO THE CLPA/CLPB FAMILY. Contains probable coiled-coil domain from aa 411-503. PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1)	Chaperone protein clpB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent Clp protease subunit	Chaperone protein clpB	IPR001270: Chaperonin clpA/B ATP-dependent protease, Hsp 100, part of novel multi-chaperone system with DnaK, DnaJ, and GrpE	ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones	similar to Salmonella typhi CT18 ClpB protein (heat shock protein f84.1) ClpB protein (heat shock protein f84.1)	Chaperone protein clpB	similar to BR1864, ATP-dependent Clp protease, ATP-binding subunit ClpB ClpB, ATP-dependent Clp protease, ATP-binding subunit ClpB	Chaperone protein clpB	
RICPR00035	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	Residues 1 to 337 of 337 are 99 pct identical to residues 1 to 337 of a 337 aa protein from Escherichia coli K12 ref: NP_417536.1 putative O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	Similar to O-sialoglycoprotein endopeptidase hypothetical protein	conserved gene O-sialoglycoprotein endopeptidase	Similar to O-sialoglycoprotein endopeptidase hypothetical protein	Probable O-sialoglycoprotein endopeptidase	identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329 metalloendopeptidase, putative, glycoprotease family	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	probable o-sialoglycoprotein endopeptidase	identified by similarity to SP:P05852; match to protein family HMM PF00814; match to protein family HMM TIGR00329 O-sialoglycoprotein endopeptidase, putative	Probable O-sialoglycoprotein endopeptidase	glycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase	O-SIALOGLYCOPROTEIN ENDOPEPTIDASE	Probable O-sialoglycoprotein endopeptidase	identified by similarity to SP:P40731; match to protein family HMM PF00814; match to protein family HMM TIGR00329 O-sialoglycoprotein endopeptidase	Probable O-sialoglycoprotein endopeptidase	O-sialoglycoprotein endopeptidase protein	
RICPR00036	ACYL-COA DESATURASE 1	Putative fatty acid desaturase transmembrane protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative fatty acid desaturase	acyl-CoA desaturase	Similar to Q27437 Stearoyl-CoA desaturase from Amblyomma americanum (317 aa). FASTA: opt: 653 Z-score: 747.5 E(): 9.6e-34 Smith-Waterman score: 653; 36.897 identity in 290 aa overlap ORF ftt0148 fatty acid desaturase	probably stearoyl-CoA desaturase Fatty-acid desaturase	Fatty acid desaturase	Acyl-CoA desaturase 1	fatty acid desaturase identified by match to protein family HMM PF00487	transcript_id=ENSOCUT00000007173	Acyl-CoA desaturase 1	transcript_id=ENSETET00000005754	Stearoyl-CoA 9-desaturase	Fatty acid desaturase	Stearoyl-CoA 9-desaturase precursor	Fatty acid desaturase	fatty acid desaturase Similar to Q27437 Stearoyl-CoA desaturase from Amblyomma americanum (317 aa). FASTA: opt: 653 Z-score: 747.5 E(): 9.6e-34 Smith-Waterman score: 653; 36.897 identity in 290 aa overlap ORF ftt0148	Stearoyl-CoA 9-desaturase precursor	Stearoyl-CoA 9-desaturase	transcript_id=ENSTBET00000013842	Fatty acid desaturase	fatty acid desaturase, family 1 identified by match to protein family HMM PF00487	fatty acid desaturase PFAM: fatty acid desaturase KEGG: neu:NE1467 fatty acid desaturase, type 2:fatty acid desaturase, type 1	Stearoyl-CoA 9-desaturase PFAM: fatty acid desaturase KEGG: she:Shewmr4_0176 stearoyl-CoA 9-desaturase	Stearoyl-CoA 9-desaturase	fatty acid desaturase PFAM: fatty acid desaturase KEGG: son:SO0197 fatty acid desaturase, family 1	Fatty acid desaturase	putative fatty acid-CoA desaturase Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type e : enzyme	Stearoyl-CoA 9-desaturase	
RICPR00037	30S ribosomal protein S6	30S ribosomal protein s6	Residues 1 to 131 of 131 are 100 pct identical to residues 1 to 131 of a 135 aa protein RS6_ECOLI sp: P02358 30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	conserved gene 30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	SSU ribosomal protein S6P	30S ribosomal protein S6	identified by similarity to SP:P02358; match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	30S ribosomal protein S6	identified by similarity to SP:P21468; match to protein family HMM PF01250; match to protein family HMM TIGR00166 ribosomal protein S6	30S ribosomal protein S6	Ribosomal protein S6	30S ribosomal protein S6	Mb0054, rpsF, len: 96 aa. Equivalent to Rv0053, len: 96 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 96 aa overlap). Probable 30S ribosomal protein S6, equivalent to RS6_MYCLE|P46389 30s ribosomal protein s6 from Mycobacterium leprae (96 aa), FASTA scores: opt: 570, E(): 1.1e-36, (91.7% identity in 96 aa overlap).Also highly similar to many e.g. Q9X8U2|RS6_STRCO 30S RIBOSOMAL PROTEIN S6 from Streptomyces coelicolor (96 aa); etc. Note that the putative product of this CDS corresponds to spot 6_26 identified in culture supernatant by proteomics at the Max-Planck-Institut fuer Infektionsbiologie (see citations below). Contains PS01048 Ribosomal protein S6 signature. BELONGS TO THE S6P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 30S RIBOSOMAL PROTEIN S6 RPSF	InterProMatches:IPR000529; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S6 (BS9)	
RICPR00038	30S ribosomal protein S18	30S ribosomal protein s18	Residues 1 to 75 of 75 are 100 pct identical to residues 1 to 75 of a 75 aa protein from Escherichia coli O157:H7 ref: NP_313205.1 30S ribosomal subunit protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal subunit protein S18	conserved gene 30S ribosomal protein S18	30S ribosomal subunit protein S18	identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165 ribosomal protein S18	30S ribosomal protein S18	identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165 ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18 1	Ribosomal protein S18	InterProMatches:IPR001648; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S18	30S ribosomal protein S18	30S ribosomal protein S18	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 30S ribosomal protein S18	IPR001648: Ribosomal protein S18 30S ribosomal protein S18	Ribosomal protein S18	similar to Salmonella typhi CT18 30s ribosomal subunit protein S18 30s ribosomal subunit protein S18	Similar to Bacillus subtilis 30S ribosomal protein S18 RpsR SWALL:RS18_BACSU (SWALL:P21475) (78 aa) fasta scores: E(): 4.3e-11, 54.93% id in 71 aa, and to Staphylococcus epidermidis 30S ribosomal protein S18 SE2370 SWALL:Q8CQP6 (EMBL:AE016752) (80 aa) fasta scores: E(): 5.1e-13, 58.57% id in 70 aa 30S ribosomal protein S18	
RICPR00039	50S ribosomal protein L9	50S ribosomal protein l9	50S ribosomal protein L9	Residues 1 to 149 of 149 are 100 pct identical to residues 1 to 149 of a 149 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290833.1 50S ribosomal subunit protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	conserved gene 50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	LSU ribosomal protein L9P	50S ribosomal protein L9	identified by similarity to SP:P02418; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	50S ribosomal protein L9	identified by similarity to SP:P02417; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158 ribosomal protein L9	50S ribosomal protein L9	Ribosomal protein L9	
RICPR00040	tRNA(Ile)-lysidine synthase	identified by match to protein family HMM PF01171 PP-loop family protein	Cell cycle protein MesJ/cytosine deaminase- related protein	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, MesJ	similar to BR1692, conserved hypothetical protein conserved hypothetical protein	tRNA(Ile)-lysidine synthase	Hypothetical protein	Similar to sp|Q9ZEA3|Y042_RICPR sp|Q92JK0|Y067_RICCN; Ortholog to ERGA_CDS_08840 Conserved hypothetical protein	COG0037 MesJ predicted ATPase of the PP-loop superfamily implicated in cell cycle control similar to NP_220436.1 cell cycle protein	Similar to: HI0404, MESJ_HAEIN putative cell cycle protein MesJ	cell cycle protein mesj	Similar to sp|Q9ZEA3|Y042_RICPR sp|Q92JK0|Y067_RICCN; Ortholog to ERWE_CDS_08930 Conserved hypothetical protein	Formerly cell cycle protein MesJ tRNA(Ile)-lysidine synthetase TilS	Best Blastp Hit: possibly phase variable - 8A residue homopolymer repeat in the coding sequence (ON) COG0037 Predicted ATPases of the PP-loop superamily conserved hypothetical protein	cell cycle protein MesJ	Protein of unknown function UPF0021	PP-loop	tRNA(Ile)-lysidine synthetase	tRNA(Ile)-lysidine synthetase-like TIGRFAM: tRNA(Ile)-lysidine synthetase-like: (5.9e-62) PFAM: PP-loop: (2.2e-55) KEGG: sil:SPO3106 PP-loop family protein, ev=1e-87, 45% identity	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	TRNA(Ile)-lysidine synthetase TilS	tRNA(Ile)-lysidine synthetase identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432	TRNA(Ile)-lysidine synthetase	Predicted ATPase of the PP-loop superfamily implicated in cell cycle control	conserved hypothetical protein	tRNA(Ile)-lysidine synthetase TIGRFAM: tRNA(Ile)-lysidine synthetase PFAM: PP-loop domain protein KEGG: pca:Pcar_0996 cell cycle protein MesJ, putative	tRNA(Ile)-lysidine synthetase TIGRFAM: tRNA(Ile)-lysidine synthetase PFAM: PP-loop KEGG: mlo:mll3884 similar to YaeN protein [Bradyrhizobium japonicum], contains similarity to cell cycle protein MesJ/cytosine deaminase-related protein	Hypothetical protein	TRNA(Ile)-lysidine synthetase	
RICPR00041	Cell division protease ftsH homolog	Cell division protein	Residues 1 to 644 of 644 are 100 pct identical to residues 4 to 647 of a 647 aa protein from Escherichia coli gb: AAA97508.1 ATP-binding protein	HflB; ATP-dependent zinc metallopeptidase (Cell division ftsh) transmembrane protein	FtsH	Probable atp-dependent zinc metallopeptidase (Cell division ftsh) transmembrane protein	Cell division protease ftsH	conserved gene cell division protein FtsH	Cell division protease ftsH	Cell division protein ftsH	cell division protein ATP-dependent Zn protease	identified by similarity to GB:CAB51029.1; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 ATP-dependent metalloprotease FtsH	ATP-dependent zinc metallopeptidase FtsH	Cell division protein FtsH	Cell division metalloproteinase protein	Cell division protease ftsH homolog	Mb3640c, ftsH, len: 760 aa. Equivalent to Rv3610c, len: 760 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 760 aa overlap). ftsH, membrane-bound protease (cell division protein) (EC 3.4.24.-) (see citation below), equivalent to Q9CD58|FTSH_MYCLE|ML0222 (alias O69532|FTSH) CELL DIVISION PROTEIN FTSH HOMOLOG from Mycobacterium leprae (787 aa), FASTA scores: opt: 4388, E(): 9.6e-205, (87.2% identity in 790 aa overlap).  Also highly similar to many FTSH proteins e.g. O52395|FTSH from Mycobacterium smegmatis (769 aa), FASTA scores: opt: 3976, E(): 7.6e-185, (82.4% identity in 761 aa overlap); Q9X8I4|SCE9.11c from Streptomyces coelicolor (668 aa), FASTA scores: opt: 2417, E(): 1.4e-109, (57.2% identity in 668 aa overlap); P72991|FTH4_SYNY3|SLR1604 from Synechocystis sp. strain PCC 6803 (616 aa), FASTA scores: opt: 1926, E(): 7.2e-86, (49.35% identity in 612 aa overlap); P28691|FTSH_ECOLI|HFLB|MRSC|TOLZ|B3178 from Escherichia coli strain K12 (644 aa), FASTA scores: opt: 1859, E(): 1.3e-82, (48.95% identity in 605 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), and PS00674 AAA-protein family signature.  BELONGS TO THE AAA FAMILY OF ATPASES AND PEPTIDASE FAMILY M41 (ZINC METALLOPROTEASE). COFACTOR: BINDS ONE ZINC ION (POTENTIAL). MEMBRANE-BOUND PROTEASE FTSH (CELL DIVISION PROTEIN)	ATP-dependent Zn metallopeptidase cell-division protein FtsH	FtsH COG0465 ATP-dependent Zn proteases cell division protein	Cell division protein FtsH	ATP-dependent Zn protease, HflB	Cell division protein FtsH	Cell division protein ftsH	identified by match to PFAM protein family HMM PF00004 cell division protein FtsH	Putative cell division protein	cell division protein FtsH2	best blastp match gb|AAK33156.1| (AE006473) putative cell division protein [Streptococcus pyogenes M1 GAS] putative cell division protein	Similar to sp|Q9ZEA2|FTSH_RICPR sp|Q92JJ9|FTSH_RICCN; Ortholog to ERGA_CDS_08850 Cell division protein ftsh homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme cell division protein	
RICPR00042	Succinate dehydrogenase iron-sulfur subunit	Residues 1 to 238 of 238 are 100 pct identical to residues 1 to 238 of a 238 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286440.1 succinate dehydrogenase, iron sulfur protein	Succinate dehydrogenase iron-sulfur protein	SdhB; succinate dehydrogenase (Iron-sulfur subunit) oxidoreductase protein	SdhB protein	Putative succinate dehydrogenase (Iron-sulfur subunit) oxidoreductase protein	Succinate dehydrogenase iron sulfur protein	succinate dehydrogenase, iron sulfur protein	conserved gene succinate dehydrogenase iron-sulfur protein subunit B	succinate dehydrogenase, iron sulfur protein	identified by match to protein family HMM TIGR00384 succinate dehydrogenase, iron-sulfur protein	Succinate dehydrogenase iron-sulfur protein	Succinate dehydrogenase iron-sulfur protein	SdhB	Succinate dehydrogenase subunit B	PROBABLE SUCCINATE DEHYDROGENASE (IRON-SULPHUR PROTEIN SUBUNIT) SDHB	Mb3348, sdhB, len: 263 aa. Equivalent to Rv3319, len: 263 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 263 aa overlap). Probable sdhB, iron-sulphur protein succinate dehydrogenase SdhB subunit (EC 1.3.99.1), equivalent to Q49916|SDHB|ML0696|L308_F1_28 SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN from Mycobacterium leprae (264 aa), FASTA scores: opt: 1678, E(): 4.7e-99, (89.8% identity in 264 aa overlap). Also highly similar to other e.g. Q9KZ91|DHSB from Streptomyces coelicolor (257 aa), FASTA scores: opt: 1125, E(): 4.6e-64, (64.1% identity in 262 aa overlap); Q9RVS1|DR0951 from Deinococcus radiodurans (264 aa), FASTA scores: opt: 1014, E(): 5e-57, (57.25% identity in 255 aa overlap); Q9PEF5|XF1073 from Xylella fastidiosa (261 aa), FASTA scores: opt: 681, E(): 5.8e-36, (45.1% identity in 244 aa overlap); P07014|DHSB_ECOLI|SDHB|B0724 from Escherichia coli strain K12 (238 aa), FASTA scores: opt: 657, E(): 1.8e-34, (43.75% identity in 240 aa overlap); etc.  Contains PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature. COFACTOR: BINDS THREE DIFFERENT IRON-SULFUR CLUSTERS: A 2FE-2S, A 3FE-4S AND A 4FE-4S. THE IRON-SULFUR CENTERS ARE SIMILAR TO THOSE OF 'PLANT-TYPE' 2FE-2S AND 'BACTERIAL-TYPE' 4FE-4S FERREDOXINS. PART OF AN ENZYME COMPLEX CONTAINING FOUR SUBUNITS: A FLAVOPROTEIN, AN IRON-SULFUR, CYTOCHROME B-556, AND AN HYDROPHOBIC ANCHOR PROTEIN. PROBABLE SUCCINATE DEHYDROGENASE (IRON-SULPHUR PROTEIN SUBUNIT) SDHB (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)	Succinate dehydrogenase iron-sulfur protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinate dehydrogenase iron-sulfur protein	Succinate dehydrogenase, iron-sulfur subunit	IPR001450: 4Fe-4S ferredoxin, iron-sulfur binding domain succinate dehydrogenase, Fe-S protein	Succinate dehydrogenase Fe-S protein, SdhB	similar to Salmonella typhi CT18 succinate dehydrogenase iron-sulfur protein succinate dehydrogenase iron-sulfur protein	similar to BR1901, succinate dehydrogenase, iron-sulfur protein SdhB, succinate dehydrogenase, iron-sulfur protein	Succinate dehydrogenase iron-sulfur protein	Succinate dehydrogenase, iron-sulfur protein	Succinate dehydrogenase iron-sulfur protein	Putative succinate dehydrogenase iron-sulphur protein	Similar to sp|Q9ZEA1|DHSB_RICPR sp|Q92JJ8|DHSB_RICCN; Ortholog to ERGA_CDS_07070 Succinate dehydrogenase iron-sulfur protein	
RICPR00043	Putative uncharacterized protein RP045	DUF185	Putative uncharacterized protein	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by similarity to GB:BAB49749.1; match to protein family HMM PF02636 conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Predicted SAM-dependent methyltransferase	similar to BR1529, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	conserved hypothetical protein	Similar to rp||RP045 rc||RC0071; Ortholog to ERGA_CDS_03330 Conserved hypothetical protein	conserved hypothetical protein similar to ZP_00210648.1 hypothetical protein	LmjF23.0890, predicted protein, len = 448 aa, conserved hypothetical protein; predicted pI = 8.2838; contains a very well conserved pfam domain of unknown function (pfam:PF02636;DE Uncharacterized ACR, COG1565;2.3e-184) across the whole protein hypothetical protein, conserved	Similar to AAO91321 (Q83AQ3) Hypothetical protein from Coxiella burnetti (388 aa). FASTA: opt: 858 Z-score: 1007.0 E(): 3.1e-48 Smith-Waterman score: 858 38.504 identity in 361 aa overlap ORF ftt1486c conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	possible cyclopropane-fatty-acyl-phospholipid synthase	Uncharacterized conserved protein	conserved hypothetical protein	
RICPR00044	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Residues 1 to 291 of 291 are 100 pct identical to residues 1 to 291 of a 291 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289380.1 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	conserved gene prolipoprotein diacylglyceryl transferase	prolipoprotein diacylglyceryl transferase	identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544 prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544 prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	InterProMatches:IPR001640; required for the lipid modification of prolipoproteins before their cleavage and translocation across the cytoplasmic membrane, Biological Process: protein-lipoylation (GO:0009249), Cellular Component: membrane (GO:0016020), Molecular Function: transferase activity (GO:0016740) prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	IPR001640: Prolipoprotein diacylglyceryl transferase phosphatidylglycerol-prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryltransferase	similar to Salmonella typhi CT18 prolipoprotein diacylglyceryl transferase prolipoprotein diacylglyceryl transferase	Similar to Salmonella typhimurium, and Salmonella typhi prolipoprotein diacylglyceryl transferase Lgt SWALL:LGT_SALTY (SWALL:Q07293) (291 aa) fasta scores: E(): 4.4e-10, 29.86% id in 298 aa and Staphylococcus aureus prolipoprotein diacylglyceryl transferase Lgt SWALL:LGT_STAAM (SWALL:P52282) (279 aa) fasta scores: E(): 3.7e-10, 29.05% id in 265 aa prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	similar to BR1528, prolipoprotein diacylglyceryl transferase Lgt, prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	Prolipoprotein diacylglyceryl transferase	
RICPR00045	Putative uncharacterized protein RP047	Putative membrane protein	Putative uncharacterized protein	similar to BR1042, identified by similarity to G:AAl52125.1; GB:AAF83247.1;PIR:A83211; conserved hypothetical membrane protein conserved hypothetical membrane protein	Putative uncharacterized protein	Putative mechanosensitive ion channel	Similar to Bacteroides thetaiotaomicron putative membrane transport protein BT4053 SWALL:Q8A0G8 (EMBL:AE016943) (443 aa) fasta scores: E(): 3.4e-125, 76.21% id in 412 aa, and to Shewanella oneidensis conserved hypothetical protein so0121 SWALL:Q8EKH2 (EMBL:AE015463) (392 aa) fasta scores: E(): 1.4e-66, 46.13% id in 388 aa, and to Vibrio cholerae hypothetical protein Vc0265 SWALL:Q9KV91 (EMBL:AE004115) (412 aa) fasta scores: E(): 2.7e-66, 45.69% id in 383 aa. putative transmembrane transport protein	Putative uncharacterized protein	Similar to Q8A7A2 Putative membrane protein from Bacteroides thetaiotaomicron (391 aa). FASTA: opt: 908 Z-score: 1062.3 E(): 2.6e-51 Smith-Waterman score: 908; 37.637 identity in 364 aa overlap. ORF ftt0992 conserved hypothetical membrane protein	Small-conductance mechanosensitive channel	identified by match to protein family HMM PF00924 mechanosensitive ion channel	identified by match to protein family HMM PF00924 mechanosensitive ion channel family protein	MscS Mechanosensitive ion channel	Similar to small-conductance mechanosensitive channel Conserved hypothetical membrane protein	Mechanosensitive (MS) ion channel	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative membrane protein	putative mechanosensitive ion channel forming protein	MscS Mechanosensitive ion channel	MscS Mechanosensitive ion channel	conserved hypothetical protein	MscS Mechanosensitive ion channel	MscS Mechanosensitive ion channel	Putative membrane protein	MscS Mechanosensitive ion channel	MscS Mechanosensitive ion channel	conserved hypothetical membrane protein Similar to Q8A7A2 Putative membrane protein from Bacteroides thetaiotaomicron (391 aa). FASTA: opt: 908 Z-score: 1062.3 E(): 2.6e-51 Smith-Waterman score: 908; 37.637 identity in 364 aa overlap. ORF ftt0992	MscS Mechanosensitive ion channel	MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel KEGG: plt:Plut_0634 hypothetical protein	MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel KEGG: bur:Bcep18194_B1267 MscS mechanosensitive ion channel	
RICPR00046	Inner membrane protein oxaA	Similar to 60 kDa inner-membrane protein YidC of Escherichia coli	identified by similarity to SP:P25714 inner membrane protein YidC, putative	Inner membrane protein oxaA	Preprotein translocase 60 kD membrane subunit	IPR001708: 60 kDa inner membrane protein putative Preprotein translocase subunit YidC	Preprotein translocase subunit YidC	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	similar to BRA1023, inner-membrane protein, 60 kDa inner-membrane protein, 60 kDa	Putative uncharacterized protein	Similar to rp||yidC; Ortholog to ERGA_CDS_03140 60 kD inner-membrane protein	COG0706 YidC preprotein translocase subunit YidC 60 kD inner-membrane protein	Inner membrane protein oxaA	COG0706 preprotein translocase subunit	Similar to: HI1001, OXAA_HAEIN preprotein translocase subunit YidC	Preprotein translocase subunit YidC YidC protein	Preprotein translocase subunit YidC	Membrane protein oxaA	Inner membrane protein oxaA	preprotein translocase subunit yidC	60 kD inner membrane protein OxaA	identified by match to protein family HMM PF02096 inner membrane protein, 60 kDa	60 kD inner-membrane protein	YidC 60 kDa inner membrane protein	Similar to rp||yidC; Ortholog to ERWE_CDS_03190 60 kD inner-membrane protein	60 kDa inner membrane insertion protein	Preprotein translocase subunit YidC	60 kDa inner membrane insertion protein	60 kDa inner membrane protein	
RICPR00047	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase	Residues 1 to 182 of 182 are 99 pct identical to residues 1 to 182 of a 182 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288373.1 phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	PgsA: CDP-diacylglycerol--glycerol-3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	phosphatidylglycerophosphate synthase	Probable cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	Similar to CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase hypothetical protein	conserved gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Similar to CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase hypothetical protein	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Phosphatidylglycerophosphate synthase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDP-diacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	CDPdiacylglycerol-glycerol-3-phosphate 3- phosphatidyltransferase	Phosphatidylglycerophosphate synthase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	PgsA3	CDP-diacylglycerol--glycerol-3-phosphate 3- phosphatidyltransferase	
RICPR00048	Uncharacterized protein RP050	Putative uncharacterized protein	similar to prokaryotic and plant carbonic anhydrase Carbonic anhydrase	unknown	unknown	Putative uncharacterized protein	conserved hypothetical protein	conserved hypothetical secreted protein secreted protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Conserved hypothetical secreted protein	Conserved hypothetical secreted protein	
RICPR00049	Uncharacterized lipoprotein RP051	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	

RICPR00051	ADP,ATP carrier protein 1	Similar to Rickettsia typhi ADP/ATP carrier protein tlc1 SWALL:Q83W30 (EMBL:AJ507301) (498 aa) fasta scores: E(): 9.1e-82, 43.97% id in 498 aa and Arabidopsis thaliana chloroplast ADP/ATP carrier protein 1, chloroplast precursor AatP1 or at1g80300 or f5i6.5 SWALL:TLC1_ARATH (SWALL:Q39002) (624 aa) fasta scores: E(): 2.9e-98, 52.81% id in 498 aa ADP/ATP carrier protein	ADP,ATP carrier protein	ATP/ADP translocase	ADP/ATP translocase	nucleotide transport protein	ADP,ATP carrier protein	ATP/ADP translocase	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein homolog	ADP,ATP carrier protein	ATP/ADP translocase	ADP,ATP carrier protein	
RICPR00052	GLYCEROL-3-PHOSPHATE TRANSPORTER	Probable hexose phosphate transport protein	Glycerol-3-phosphate permease	IPR000849: GlpT transporter; IPR007114: Major facilitator superfamily MFS family, sn-glycerol-3-phosphate transport protein	similar to Salmonella typhi CT18 glycerol-3-phosphate transporter glycerol-3-phosphate transporter	Similar to Q81V41 Glycerol-3-phosphate transporter from Bacillus anthracis (strain Ames) (449 aa). FASTA: opt: 1382 Z-score: 1521.3 E(): 7.6e-77 Smith-Waterman score: 1382; 48.268identity in 433 aa overlap. Glycerol-3-phosphate transporter	MFS family, sn-glycerol-3-phosphate transport protein	glycerol-3-phosphate transporter	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 glycerol-3-phosphate transporter	GlpT transporter:Glycerol-3-phosphate transporter	COG2271 Sugar phosphate permease	Code: G; COG: COG2271 sn-glycerol-3-phosphate permease	Code: G; COG: COG2271 sn-glycerol-3-phosphate permease	Sugar phosphate permease	Major facilitator superfamily MFS_1	transcript_id=ENSGACT00000009032	Glycerol-3-phosphate transporter	hypothetical protein similarity to COG2814 Arabinose efflux permease(Evalue: 2E-41)	Glycerol-3-phosphate transporter Similar to Q81V41 Glycerol-3-phosphate transporter from Bacillus anthracis (strain Ames) (449 aa). FASTA: opt: 1382 Z-score: 1521.3 E(): 7.6e-77 Smith-Waterman score: 1382; 48.268identity in 433 aa overlap.	Glycerol-3-phosphate transporter	Glycerol-3-phosphate transporter	transcript_id=ENSFCAT00000001153	fosmidomycin resistance protein	major facilitator superfamily MFS_1	glycerol-3-phosphatase transporter	transcript_id=ENSSTOT00000014346	transcript_id=ENSTBET00000010476	major facilitator superfamily MFS_1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 KEGG: bcn:Bcen_6390 major facilitator superfamily MFS_1	glycerol-3-phosphate transporter identified by similarity to SP:P08194; match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881	
RICPR00053	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Residues 1 to 143 of 143 are 100 pct identical to residues 352 to 494 of a 494 aa protein from Cloning vector pZEO-SG4 gb: AAA93513.1 orf, partial conserved hypothetical protein	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	similar to nucleoside diphosphate kinase hypothetical protein	conserved gene nucleoside diphosphate kinase	similar to nucleoside diphosphate kinase hypothetical protein	Nucleoside-diphosphate kinase	identified by similarity to EGAD:18023; match to protein family HMM PF00334 nucleoside diphosphate kinase	nucleoside diphosphate kinase	identified by similarity to SP:Q59636; match to protein family HMM PF00334 nucleoside diphosphate kinase	Nucleoside diphosphate kinase	nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	identified by similarity to SP:Q59636; match to protein family HMM PF00334 nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Nucleoside diphosphate kinase	Mb2472c, ndkA, len: 136 aa. Equivalent to Rv2445c, len: 136 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 136 aa overlap). Probable ndkA (alternate gene name: ndk), nucleoside diphosphate kinase (EC 2.7.4.6), equivalent to Q9CBZ0|NDK|ML1469 from Mycobacterium leprae (136 aa), FASTA scores: opt: 762, E(): 1.5e-42, (87.4% identity in 135 aa overlap); and O85501|NDK from Mycobacterium smegmatis (139 aa), FASTA scores: opt: 714, E(): 1.9e-39, (80.7% identity in 135 aa overlap). Also highly similar to others e.g.  P50589|NDK_STRCO from Streptomyces coelicolor (137 aa), FASTA scores: opt: 535, 6.8e-28, (60.3% identity in 136 aa overlap); O29491|NDK_ARCFU|AF0767 from Archaeoglobus fulgidus (151 aa), FASTA scores: opt: 521, E(): 5.9e-27, (58.0% identity in 131 aa overlap); P31103|NDK_BACSU from Bacillus subtilis (151 aa), FASTA scores: opt: 515, E(): 1.4e-26, (56.5% identity in 131 aa overlap); etc. BELONGS TO THE NDK FAMILY. PROBABLE NUCLEOSIDE DIPHOSPHATE KINASE NDKA (NDK) (NDP KINASE) (NUCLEOSIDE-2-P KINASE)	
RICPR00054	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Glucose inhibited division protein a	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Residues 1 to 629 of 629 are 99 pct identical to residues 1 to 629 of a 629 aa protein from Escherichia coli ref: NP_418197.1 glucose inhibited division protein	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Highly simislar to glucose-inhibited division protein A GidA hypothetical protein	conserved gene glucose inhibited division protein A	Highly simislar to glucose-inhibited division protein A GidA hypothetical protein	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	identified by similarity to EGAD:15241; match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	Putative tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase subunit GidA	glucose inhibited division protein	identified by similarity to SP:P17112; match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	glucose inhibited division protein A	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG	identified by match to protein family HMM PF01134; match to protein family HMM TIGR00136 glucose inhibited division protein A	
RICPR00055	Ribosomal RNA small subunit methyltransferase G	Residues 1 to 207 of 207 are 99 pct identical to residues 1 to 207 of a 207 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290379.1 glucose-inhibited division; chromosome replication?	Ribosomal RNA small subunit methyltransferase G	glucose inhibited division protein B	Ribosomal RNA small subunit methyltransferase G	Similar to glucose inhibited division protein B GidB hypothetical protein	conserved gene glucose inhibited division protein B	Similar to glucose inhibited division protein B GidB hypothetical protein	identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 glucose-inhibited division protein B	Ribosomal RNA small subunit methyltransferase G	Ribosomal RNA small subunit methyltransferase G	Glucose inhibited division protein B	similar to BR2060, glucose-inhibited division protein B GidB, glucose-inhibited division protein B	Ribosomal RNA small subunit methyltransferase G	Glucose inhibited division protein B homolog	methyltransferase; COG0357 glucose inhibited division protein B	glucose inhibited division protein B; Similar to: HI0486, GIDB_HAEIN methyltransferase GidB	Ribosomal RNA small subunit methyltransferase G	Similar to GIDB_ECOLI Methyltransferase gidB from E.coli (207 aa). FASTA: opt: 549 z-score: 638.3 E(): 1.1e-27 40.686 identity in 204 aa overlap methyltransferase glucose-inhibited cell division protein	involved in bacterial cell division Predicted S-adenosylmethionine-dependent methyltransferase	Glucose inhibited division protein B	identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 methyltransferase GidB	Glucose inhibited division protein	identified by sequence similarity; putative; ORF located using Blastx; COG0357 glucose inhibited division protein B	identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 methyltransferase GidB	identified by sequence similarity; putative; ORF located using Blastx; COG0357 glucose inhibited division protein B	identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138 methyltransferase GidB	Glucose inhibited division protein	Glucose inhibited division protein	
RICPR00056	SOJ PROTEIN	Chromosome partitioning protein parA	ParA	ParA family ATPase	ParA/Soj	Putative chromosome partitioning protein para	Highly similar to chromosome partitioning protein ParA family hypothetical protein	conserved gene, chromosome partitioning protein ParA-like sporulation initiation inhibitor protein Soj	Highly similar to chromosome partitioning protein ParA family hypothetical protein	Chromosome partitioning protein, membrane- associated ATPase	identified by similarity to SP:O05189; match to protein family HMM PF01656 chromosome partitioning protein ParA	Chromosome partitioning protein, ParA family ATPase	Chromosome partitioning protein	identified by similarity to SP:P37522; match to protein family HMM PF00991 chromosome partitioning protein, ParA family	ParB	Chromosome partitioning protein A	PROBABLE CHROMOSOME PARTITIONING PROTEIN PARA	Mb3949c, parA, len: 347 aa. Equivalent to Rv3918c, len: 347 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 347 aa overlap). Probable parA, chromosome partitioning protein, highly similar to Q9CCX7|PARA|ML2707 PUTATIVE CELL DIVISION PROTEIN from Mycobacterium leprae (351 aa), FASTA scores: opt: 1679, E(): 2.9e-93, (78.1% identity in 347 aa overlap). Also highly similar to others e.g. Q9RFM1|PARA PARA PROTEIN from Streptomyces coelicolor (357 aa), FASTA scores: opt: 1197, E(): 2e-64, (60.45% identity in 306 aa overlap); Q98DZ3|MLL4479|PARA CHROMOSOME PARTITIONING PROTEIN from Rhizobium loti (Mesorhizobium loti) (266 aa), FASTA scores: opt: 835, E(): 7.2e-43, (50.95% identity in 257 aa overlap); O05189|PARA_CAUCR CHROMOSOME PARTITIONING PROTEIN from Caulobacter crescentus (267 aa), FASTA scores: opt: 813, E(): 1.5e-41, (51.35% identity in 261 aa overlap) (has its N-terminus shorter); etc. Equivalent to AAK48403 from Mycobacterium tuberculosis strain CDC1551 (381 aa) but shorter 34 aa. Also similar to other M.  tuberculosis proteins: MTCI125.30, FASTA scores: E(): 4.3e-32, (35.2% identity in 327 aa overlap); and MTCY07D11.13, FASTA scores: E(): 3e-30, (39.9% identity in 263 aa overlap). BELONGS TO THE PARA FAMILY. Possible alternative start site at aa 107. Note that previously known as parB. PROBABLE CHROMOSOME PARTITIONING PROTEIN PARA	InterProMatches:IPR000707; centromere-like function with Spo0J involved in forespore chromosome partitioning negative regulation of sporulation initiation (antagonized by Spo0J) chromosome partitioning protein transcriptional regulator	sporulation initiation inhibitor protein Soj	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chromosome partitioning protein	chromosome partitioning protein	Chromosome partitioning ATPase, ParA family	ATPases involved in chromosome partitioning ParA	similar to BR2059, chromosome partitioning protein ParA ParA, chromosome partitioning protein	Chromosome partitioning protein	Chromosome partitioning protein para	Putative	ParA family protein	
RICPR00057	Probable chromosome-partitioning protein parB	Chromosome partitioning protein, parB	ParB	Probable chromosome-partitioning protein parB	ParB-like nuclease domain:ParB-like partition protein	DNA-binding protein Spo0j-like protein	Putative chromosome partitioning protein parb	identified by similarity to OMNI:SA2735; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partioning protein, ParB family	ParB Chromosome partitioning protein	identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partitioning protein parB	Chromosome partitioning protein ParB	Probable chromosome-partitioning protein parB	DNA-binding protein Spo0J-like protein	identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 chromosome partitioning protein, ParB family	Chromosome partitioning protein B	Probable chromosome-partitioning protein parB	Mb3948c, parB, len: 344 aa. Equivalent to Rv3917c, len: 344 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 344 aa overlap). Probable parB, chromosome partitioning protein, equivalent to Q50201|PARB_MYCLE|ML2706 PROBABLE CHROMOSOME PARTITIONING PROTEIN from Mycobacterium leprae (333 aa), FASTA scores: opt: 1654, E(): 1.6e-88, (78.6% identity in 332 aa overlap). Also highly similar to to others e.g.  Q9S6U1|STH24.09 PUTATIVE PARTITIONING OR SPORULATION PROTEIN from Streptomyces coelicolor (328 aa), FASTA scores: opt: 966, E(): 9.7e-49, (58.55% identity in 287 aa overlap) (no similarity on N-terminus); Q9PB63|PARB_XYLFA|XF2281 PROBABLE CHROMOSOME PARTITIONING PROTEIN from Xylella fastidiosa (310 aa), FASTA scores: opt: 598, E(): 1.8e-27, (38.65% identity in 326 aa overlap); P31857|PARB_PSEPU PROBABLE CHROMOSOME PARTITIONING PROTEIN from Pseudomonas putida (290 aa), FASTA scores: opt: 573, E(): 4.6e-26, (40.35% identity in 322 aa overlap); etc. Contains probable helix-turn-helix motif at aa 179 to 200 (Score 1150, +3.1 0 SD). BELONGS TO THE PARB FAMILY. Note that previously known as parA. PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark chromosome partitioning protein	Chromosome partitioning protein, ParB family	Chromosome partitioning protein	Similar to Chlamydia pneumoniae probable chromosome partitioning protein parB or cpn0684 or cp0062 SWALL:PARB_CHLPN (SWALL:Q9Z7M0) (286 aa) fasta scores: E(): 5.5e-65, 68.72% id in 275 aa. putative chromosome partitioning protein	Transcriptional regulator involved in chromosome partitioning ParB	similar to BR2058, chromosome partitioning protein ParB ParB, chromosome partitioning protein ParB	Putative uncharacterized protein gbs2134	Chromosome partitioning protein	Chromosome partitioning protein, parb	hypothetical protein, similar to DNA-binding protein Spo0J-like homolog	Probable chromosome partitioning protein parB	identified by match to PFAM protein family HMM PF02195 partitioning protein, ParB family	
RICPR00058	ABC TRANSPORTER ATP-BINDING PROTEIN	ATPase components of ABC transporters with duplicated ATPase domains	Putative atp-binding abc transporter protein	Similar to ABC transporter, ATP-binding protein hypothetical protein	conserved gene ABC transporter, ABC binding protein	Similar to ABC transporter, ATP-binding protein hypothetical protein	identified by similarity to SP:P37797 ABC transporter, ATP-binding protein	Probable ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	Putative uncharacterized protein	ABC transporter	ABC transporter, ATP-binding protein	Mb2504c, -, len: 558 aa. Equivalent to Rv2477c, len: 558 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 558 aa overlap). Probable ATP binding protein ABC-transporter (see citation below), probably involved in macrolide transport, equivalent to Q9X7B1|MLCB1610.09|ML1248 PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN from Mycobacterium leprae (556 aa) FASTA scores: opt: 3448, E(): 3.8e-176, (92.3% identity in 557 aa overlap). Also highly similar to many ATP binding proteins e.g. Q9L244|SC6D10.20c PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN from Streptomyces coelicolor (547 aa), FASTA scores: opt: 2937, E(): 5.6e-149, (79.5% identity in 551 aa overlap); AAK24119|CC2148 ABC transporter ATP-binding protein from Caulobacter crescentus (555 aa), FASTA scores: opt: 2175, E(): 1.9e-108, (59.4% identity in 557 aa overlap); Q9HVJ1 PROBABLE ATP-BINDING COMPONENT OF ABC TRANSPORTER from Pseudomonas aeruginosa (554 aa), FASTA scores: opt: 2054, E(): 5.1e-102, (56.9% identity in 559 aa overlap); etc. Contains 2 x PS00017 ATP/GTP-binding site motif A (P-loop), 2 x PS00211 ABC transporters family signature, and probable coiled-coil from aa 273 to 311.  BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY (ABC TRANSPORTERS). PROBABLE MACROLIDE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ABC transporter ATP-binding protein	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter; IPR003593: AAA ATPase putative ABC superfamily (atp_bind) transport protein	similar to Salmonella typhi CT18 conserved hypothetical ABC transporter conserved hypothetical ABC transporter	similar to BR1456, ABC transporter, ATP-binding protein ABC transporter, ATP-binding protein	ABC transporter ATP-binding protein	Putative ABC drug efflux transporter, fused ATP binding domains	ABC transporter ATP-binding protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative transport protein (ABC superfamily, atp_bind)	with duplicated ATPase; COG0488 ABC transporter	ABC transporter ATP-binding protein	Similar to: HI1252, YJJK_HAEIN ABC transporter ATP-binding protein	Similar to Bacteroides thetaiotaomicron ABC transporter ATP-binding protein BT1186 SWALL:AAO76293 (EMBL:AE016930) (562 aa) fasta scores: E(): 7.6e-187, 97.68% id in 562 aa, and to Myxococcus xanthus ABC transporter Mac1 SWALL:Q9F1V6 (EMBL:AB041227) (559 aa) fasta scores: E(): 6.2e-111, 60.03% id in 558 aa, and to Ralstonia solanacearum putative ATP-binding ABC transporter protein RSC2913 or RS00182 SWALL:Q8XVB8 (EMBL:AL646072) (555 aa) fasta scores: E(): 3.2e-107, 57.63% id in 557 aa putative ATP-binding component of ABC transporter	ATPase components of ABC transporters with duplicated ATPase domains Uup protein	ABC transporter, ATP-binding protein	Similar to YJJK_ECOLI (P37797) ABC transporter ATP-binding protein from E. coli (554 aa). FASTA: opt: 2397 Z-score: 2422.3 E(): 4.9e-127 Smith-Waterman score: 2397; 62.996 identity in 554 aa overlap ABC transporter, ATP-binding protein	
RICPR00059	Uncharacterized protein RP061	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative ABC transporter ATP-binding component	
RICPR00060	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase kdsA carboxysome formation protein CcmA	identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362 3-deoxy-8-phosphooctulonate synthase	3-deoxy-8-phosphooctulonate synthase	Similar to Chlamydia psittaci putative 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_CHLPS (SWALL:Q46225) (269 aa) fasta scores: E(): 5.2e-104, 95.91% id in 269 aa, and to Escherichia coli 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SWALL:KDSA_ECOLI (SWALL:P17579) (284 aa) fasta scores: E(): 1.4e-41, 45.97% id in 261 aa 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	similar to BR1133, 2-dehydro-3-deoxyphosphooctonate aldolase KdsA, 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	COG2877 2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS)	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxy-phosphooctonate aldolase	3-deoxy-D-manno-octulosonic acid (KDO) 8- phosphate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	3-deoxy-8-phosphooctulonate synthase	2-dehydro-3-deoxyphosphooctonate aldolase	DAHP synthetase I/KDSA superfamily:2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	2-dehydro-3-deoxyphosphooctonate aldolase	
RICPR00061	Uncharacterized protein RP063	Residues 1 to 125 of 125 are 96 pct identical to residues 5 to 129 of a 129 aa protein from Salmonella enterica subsp. enterica serovar Typhi ref: NP_454812.1 orf, conserved hypothetical protein	Iron-sulfur cluster insertion protein erpA	Putative iron-sulfur cluster insertion protein erpA	Putative uncharacterized protein	Iron-sulfur cluster insertion protein erpA	Putative iron-sulfur cluster insertion protein erpA	Iron-sulfur cluster insertion protein erpA	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 HesB domain protein	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 Iron-sulfur cluster assembly family protein	Putative iron-sulfur cluster insertion protein erpA	Iron-sulfur cluster insertion protein erpA	Hypothetical protein SE0634	Putative uncharacterized protein	conserved protein conserved protein YutM	conserved hypothetical protein	Iron-sulfur cluster insertion protein erpA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR000361: Protein of unknown function, HesB/YadR/YfhF putative HesB-like domain	HesB/YadR/YfhF family protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR0875, HesB/YadR/YfhF family protein HesB/YadR/YfhF family protein	Iron-sulfur cluster insertion protein erpA	Putative uncharacterized protein	conserved hypothetical protein	Iron-sulfur cluster insertion protein erpA	
RICPR00062	Deoxyguanosinetriphosphate triphosphohydrolase- like protein	Deoxyguanosinetriphosphate triphosphohydrolase- like protein	Deoxyguanosinetriphosphate triphosphohydrolase- like protein	Deoxyguanosinetriphosphate triphosphohydrolase- like protein	conserved gene deoxyguanosine triphosphate triphosphohydrolase	identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353 deoxyguanosinetriphosphate triphosphohydrolase, putative	Deoxyguanosinetriphosphate triphosphohydrolase protein	Deoxyguanosinetriphosphate triphosphohydrolase, putative	dGTP triphosphohydrolase	similar to BR0876, deoxyguanosinetriphosphate triphosphohydrolase Dgt, deoxyguanosinetriphosphate triphosphohydrolase	Deoxyguanosinetriphosphate triphosphohydrolase- like protein	Similar to sp|Q92JH3|DGT1_RICCN sp|Q9A6S5|DGT1_CAUCR sp|Q98LB9|DG1A_RHILO sp|Q8YGR8|DGT1_BRUME sp|Q92Q32|DGT1_RHIME; Ortholog to ERGA_CDS_03820 Deoxyguanosinetriphosphate triphosphohydrolase-like protein	COG0232 deoxyguanosinetriphosphate triphosphohydrolase-like protein	Similar to Salmonella typhimurium deoxyguanosinetriphosphate triphosphohydrolase Dgt or STM0208 SWALL:DGTP_SALTY (SWALL:P40733) (504 aa) fasta scores: E(): 2.3e-11, 30.45% id in 509 aa, and to Bacteroides thetaiotaomicron dGTP triphosphohydrolase BT3460 SWALL:AAO78566 (EMBL:AE016940) (450 aa) fasta scores: E(): 6.6e-150, 84.22% id in 450 aa, and to Pseudomonas aeruginosa deoxyguanosinetriphosphate triphosphohydrolase-like protein Dgt2 or PA3043 SWALL:DGT2_PSEAE (SWALL:Q9HZG5) (443 aa) fasta scores: E(): 2.9e-53, 37.36% id in 455 aa putative deoxyguanosinetriphosphate triphosphohydrolase	Similar to DGT1_VIBPA (Q87R73) Deoxyguanosinetriphosphate triphosphohydrolase-like protein from Vibrio parahaemolyticus (440 aa). FASTA: opt: 587 Z-score: 683.8 E(): 3.4e-30 Smith-Waterman score: 661; 33.781identity in 447 aa overlap. deoxyguanosinetriphosphate triphosphohydrolase	DGTP triphosphohydrolase	Deoxyguanosinetriphosphate triphosphohydrolase-like protein	Deoxyguanosinetriphosphate triphosphohydrolase	dGTPase	Similar to sp|Q92JH3|DGT1_RICCN sp|Q9A6S5|DGT1_CAUCR sp|Q98LB9|DG1A_RHILO sp|Q8YGR8|DGT1_BRUME sp|Q92Q32|DGT1_RHIME; Ortholog to ERWE_CDS_03860 Deoxyguanosinetriphosphate triphosphohydrolase-like protein	Deoxyguanosinetriphosphate triphosphohydrolase	Deoxyguanosinetriphosphate triphosphohydrolase	deoxyguanosinetriphosphate triphosphohydrolase	putative deoxyguanosinetriphosphate triphosphohydrolase	Deoxyguanosinetriphosphate triphosphohydrolase	Metal dependent phosphohydrolase, HD region:Deoxyguanosinetriphosphate triphosphohydrolase:Metal-dependent phosphohydrolase, ...	identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353 putative deoxyguanosinetriphosphate triphosphohydrolase	Deoxyguanosine triphosphate triphosphohydrolase	COG0232, Dgt, dGTP triphosphohydrolase, COG1078, HD superfamily phosphohydrolases; HD domain, metal dependent phosphohydrolases. Citation: 8397198 (from E. coli ortholog) Deoxyguanosinetriphosphate triphosphohydrolase	
RICPR00063	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	arginyl-tRNA synthetase	Arginyl-tRNA synthetase	arginine tRNA synthetase	conserved gene arginyl tRNA synthetase	arginine tRNA synthetase	identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 arginyl-tRNA synthetase	Arginyl-tRNA synthetase	identified by similarity to SP:P46906; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	identified by similarity to SP:P46906; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456 arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Mb1324, argS, len: 550 aa. Equivalent to Rv1292, len: 550 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 550 aa overlap). Probable argS, Arginyl-tRNA synthetase (EC 6.1.1.19), highly similar to SYR_MYCLE|P45840 Mycobacterium leprae (550 aa), FASTA scores: opt: 3115, E(): 0, (84.9% identity in 550 aa overlap). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. PROBABLE ARGINYL-TRNA SYNTHETASE ARGS (ARGRS) (Arginine--tRNA ligase)	InterProMatches:IPR001278; Molecular Function: arginine-tRNA ligase activity (GO:0004814), Molecular Function: ATP binding (GO:0005524), Biological Process: arginyl-tRNA aminoacylation (GO:0006420) arginyl-tRNA synthetase	arginyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark arginyl-tRNA synthetase	Arginyl-tRNA synthetase	Arginyl-tRNA synthetase	similar to BR0877, arginyl-tRNA synthetase ArgS, arginyl-tRNA synthetase	Arginyl-tRNA synthetase	
RICPR00064	Uncharacterized protein RP066	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Arginyl-tRNA synthetase	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00065	DNA topoisomerase 4 subunit A	ParC/GyrA	Probable dna topoisomerase iv (Subunit a) protein	Topoisomerase IV subunit A	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01062 DNA topoisomerase IV, A subunit	DNA topoisomerase IV subunit A	Topoisomerase IV subunit	DNA topoisomerase IV, A subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark topoisomerase IV subunit A	similar to BR0754, DNA topoisomerase IV, A subunit ParC, DNA topoisomerase IV, A subunit	Topoisomerase IV subunit A	Topoisomerase IV subunit a	DNA topoisomerase IV subunit A	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA topoisomerase IV, subunit A	gyrase; COG0188 DNA topoisomerase IV subunitA	topoisomerase IV subunit A	DNA gyrase (topoisomerase II) A subunit GyrA protein	DNA topoisomerase IV, A subunit	DNA topoisomerase IV subunit A	DNA topoisomerase IV subunit A (EC 5.99.1.-)	topoisomerase IV subunit A	Topoisomerase IV subunit A	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01062 DNA topoisomerase IV, A subunit	Gram negative topoisomerase IV, subunit A	Topoisomerase IV subunit A	Best Blastp Hit: pir||H81805 DNA topoisomerase IV subunit A (EC 5.99.1.-) NMA1802 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380442|emb|CAB85028.1| (AL162757) DNA topoisomerase IV subunit A [Neisseria meningitidis] COG0188 DNA gyrase (topoisomerase II) A subunit; ParC DNA topoisomerase IV subunit A	gram negative topoisomerase IV, subunit A	DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase IV, subunit A:DNA gyrase C-terminal repeat, beta-propeller	DNA topoisomerase IV, A subunit	
RICPR00066	Uncharacterized protein RP068	unknown	conserved domain protein identified by similarity to GB:AAS14436.1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative surface antigen	hypothetical exported protein	DNA topoisomerase IV subunit A	Putative uncharacterized protein	Putaive outer membrane protein precursor	Putative outer membrane protein	Putative uncharacterized protein	
RICPR00067	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	conserved gene deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	dCTP deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	identified by match to protein family HMM PF00692 deoxycytidine triphosphate deaminase, putative	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Mb0329, dcd, len: 190 aa. Equivalent to Rv0321, len: 190 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 190 aa overlap). Probable dcd (alterrnate gene names: dus or paxA), deoxycytidine triphosphate deaminase (EC 3.5.4.13), equivalent to CAC32024.1|AL583925 probable deoxycytidine triphosphate deaminase from Mycobacterium leprae (190 aa). Also highly similar to others e.g.  Q9X8W0|DCD_STRCO|7480599|T36613|SCH35.46 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Streptomyces coelicolor (191 aa); DCD_ECOLI|P28248|DUS|PAXA|B2065 DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE from Escherichia coli strain K12 (193 aa), FASTA scores: opt: 408, E(): 2.7e-21, (43.1% identity in 188 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE DCTP DEAMINASE FAMILY. PROBABLE DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE DCD (DCTP DEAMINASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine deaminase	Similar to Neisseria meningitidis deoxycytidine triphosphate deaminase Dcd or Nma1060 or nmb0849 SWALL:DCD_NEIMA (SWALL:Q9JRE8) (188 aa) fasta scores: E(): 5.1e-54, 68.08% id in 188 aa, and to Pseudomonas aeruginosa deoxycytidine triphosphate deaminase Dcd or Pa3480 SWALL:DCD_PSEAE (SWALL:Q9HYC9) (188 aa) fasta scores: E(): 3.2e-53, 68.08% id in 188 aa deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	Hypothetical protein	dCTP Deaminase	Similar to sp|Q92JG8|DCD_RICCN sp|Q9ZE77|DCD_RICPR; Ortholog to ERGA_CDS_07260 Deoxycytidine triphosphate deaminase	deoxycytidine triphosphate deaminase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme deoxycytidine triphosphate deaminase	COG0717 Dcd deoxycytidine deaminase similar to EAA25831.1 deoxycytidine triphosphate deaminase	Deoxycytidine triphosphate deaminase	COG0717 deoxycytidine deaminase	
RICPR00068	Protein-export protein secB	Residues 1 to 155 of 155 are 100 pct identical to residues 1 to 155 of a 155 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290192.1 protein export; molecular chaperone; may bind to signel sequence	Protein-export protein secB	Protein-export protein secB	Protein-export protein secB	Protein-export protein secB	similar to protein-export protein SecB hypothetical protein	conserved gene protein export protein SecB	similar to protein-export protein SecB hypothetical protein	identified by match to protein family HMM PF02556 protein-export protein SecB	Protein-export protein secB	Protein-export protein secB	Protein-export translocase chaperone protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protein-export protein	IPR003708: Bacterial protein export chaperone SecB molecular chaperone in protein export	Preprotein translocase subunit SecB	similar to Salmonella typhi CT18 protein-export protein SecB protein-export protein SecB	similar to BR2072, protein-export protein SecB SecB, protein-export protein	Protein-export protein secB	Protein-export protein secB	Protein-export protein secB	Hypothetical protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter molecular chaperone in protein export	COG1952 preprotein translocase subunit SecB; go_process: 0015031 protein export protein	Protein-export protein secB	COG1952 preprotein translocase subunit	protein translocase subunit SecB	Similar to: HI0743, SECB_HAEIN protein-export protein SecB	Preprotein translocase subunit SecB SecB protein	
RICPR00069	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR	Transcriptional activator protein CzcR	Transcriptional activator protein CzcR	DNA-binding response regulator CtrA COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	Response regulator	two component transcriptional regulator, winged helix family PFAM: response regulator receiver KEGG: sil:SPO1679 DNA-binding response regulator CtrA	CzcR-like response regulator	Transcriptional activator protein czcR	Transcriptional activator protein CzcR	Transcriptional activator protein CzcR	Transcriptional activator protein CzcR	cell cycle transcriptional regulator	Preprotein translocase subunit SecB	Two component transcriptional regulator, winged helix family	Transcriptional activator protein CzcR	Cell cycle transcriptional regulator CtrA	Transcriptional activator protein czcR	
RICPR00070	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	similar to conserved hypothetical protein hypothetical protein	conserved gene, may be fused protein GTP cyclohydrolase I PLUS perhaps regulatory protein	similar to conserved hypothetical protein hypothetical protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR001474: GTP cyclohydrolase I putative GTP cyclohydrolase I	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	NADPH-dependent 7-cyano-7-deazaguanine reductase	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	conserved hypothetical protein	Similar to: HI1291, YQCD_HAEIN predicted enzyme related to GTP cyclohydrolase I	Enzyme related to GTP cyclohydrolase I Hypothetical protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	GTP cyclohydrolase I related protein	NADPH-dependent 7-cyano-7-deazaguanine reductase	similar to queF gene product; probably involved in queuosine biosynthesis	conserved hypothetical protein	identified by match to protein family HMM PF01227 GTP cyclohydrolase I family protein	possible GTP cyclohydrolase I	identified by match to protein family HMM PF01227 GTP cyclohydrolase I-like protein	identified by match to protein family HMM PF01227 GTP cyclohydrolase I, putative	GTP cyclohydrolase I	GTP cyclohydrolase I	
RICPR00071	Putative uncharacterized protein RP073	identified by similarity to GB:CAC47907.1 conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized protein conserved in bacteria	similar to BR1737, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Similar to rc||RC0103 rp||RP073; Ortholog to ERGA_CDS_01310 Conserved hypothetical protein	conserved hypothetical protein similar to ZP_00211121.1 hypothetical protein	COG3820 conserved hypothetical protein	Hypothetical protein	similar to protein of unknown function (DUF1013) hypothetical protein	Similar to rc||RC0103 rp||RP073; Ortholog to ERWE_CDS_01350 Conserved hypothetical protein	unknown	Protein of unknown function DUF1013	putative Uncharacterized protein conserved in bacteria	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF1013	conserved hypothetical protein identified by similarity to GB:BAB50585.1; match to protein family HMM PF06242	protein of unknown function DUF1013	unknown	conserved hypothetical protein similarity:fasta; with=UniProt:Q7CWC6_AGRT5 (EMBL:AE008188); Agrobacterium tumefaciens (strain C58/ATCC 33970).; AGR_C_4981p.; length=266; id 85.714; 252 aa overlap; query 15-263; subject 17-266	Protein of unknown function DUF1013	protein of unknown function DUF1013 PFAM: protein of unknown function DUF1013: (4.5e-87) KEGG: sil:SPO3566 hypothetical protein, ev=1e-119, 83% identity	protein of unknown function DUF1013	conserved hypothetical protein identified by similarity to GB:AAL02641.1; match to protein family HMM PF06242	hypothetical conserved protein similar to SMc04094 [Sinorhizobium meliloti] Similar to swissprot:Q92KX1 Putative location:bacterial cytoplasm Psort-Score: 0.1180	Protein of unknown function DUF1013	
RICPR00072	NAD(P) TRANSHYDROGENASE SUBUNIT BETA	NAD(P) transhydrogenase beta subunit	Probable transmembrane nadp transhydrogenase (Beta subunit) oxidoreductase protein	NAD(P) transhydrogenase, beta subunit	NAD(P)(+) transhydrogenase	similar to BRA0971, NAD(P) transhydrogenase, beta subunit PntB, NAD(P) transhydrogenase, beta subunit	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme pyridine nucleotide transhydrogenase, beta subunit	Pyridine nucleotide transhydrogenase, beta subunit	NAD(p) transhydrogenase subunit beta	identified by similarity to SP:P07002; match to protein family HMM PF02233 NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(p) transhydrogenase subunit beta	NAD/NADP transhydrogenase beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase subunit beta	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	Putative nicotinamide nucleotide transhydrogenase, subunit beta	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(p) transhydrogenase subunit beta	putative transmembrane NAD(P) transhydrogenase subunit beta similarity:fasta; with=UniProt:PNTB_RHORU (EMBL:RR158); Rhodospirillum rubrum.; pntB; NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta) (Nicotinamide nucleotide transhydrogenase subunit beta) (Proton-translocating transhydrogenase NADP(H)-binding component) (dIII).; length=464; id 68.421; 456 aa overlap; query 9-462; subject 10-463 similarity:fasta; with=UniProt:Q92LZ9_RHIME (EMBL:SME591792); Rhizobium meliloti (Sinorhizobium meliloti).; PROBABLE NAD(P) TRANSHYDROGENASE SUBUNIT BETA TRANSMEMBRANE PROTEIN (EC 1.6.1.1).; length=466; id 87.041; 463 aa overlap; query 3-464; subject 4-466	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase, beta subunit	NAD(P) transhydrogenase subunit beta identified by match to protein family HMM PF02233	NAD(P)(+) transhydrogenase (AB-specific), beta subunit protein Putative location:bacterial inner membrane Psort-Score: 0.6265 similar to pntB (SMc03938) [Sinorhizobium meliloti] Similar to swissprot:Q92LZ9; go_function: oxidoreductase activity [goid 0016491]; go_function: NAD(P)+ transhydrogenase (B-specific) activity [goid 0003957]; go_function: NAD(P) transhydrogenase activity [goid 0008746]; go_process: electron transport [goid 0006118]	NAD(P) transhydrogenase, beta subunit	
RICPR00073	Putative outer membrane protein RP075	OmpW family outer-membrane protein	Hypothetical outer-membrane protein	OmpW family outer-membrane protein	OmpW family outer-membrane protein	OmpW family outer-membrane protein	hypothetical protein	Hypothetical outer-membrane protein	Putative uncharacterized protein	
RICPR00074	S-adenosylmethionine uptake transporter	Probable transporter, drug/metabolite exporter family	Similar to putative membrane protein	similar to hypothetical transporter hypothetical protein	Transport protein	drug/metabolite transporter (DMT) superfamily protein	conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron putative permease BT4238 SWALL:AAO79343 (EMBL:AE016944) (299 aa) fasta scores: E(): 7e-107, 87.62% id in 299 aa, and to Clostridium acetobutylicum predicted permease Cac1984 SWALL:Q97HM6 (EMBL:AE007702) (285 aa) fasta scores: E(): 4.7e-25, 34.57% id in 295 aa, and to Aquifex aeolicus hypothetical protein Aq_246 SWALL:O66609 (EMBL:AE000680) (279 aa) fasta scores: E(): 1.6e-10, 26.66% id in 255 aa putative transmembrane protein	S-adenosylmethionine transporter	Code: GER; COG: COG0697 conserved hypothetical protein	hypothetical transport protein	identified by match to protein family HMM PF00892 integral membrane domain protein	identified by match to protein family HMM PF00892 putative membrane protein	integral membrane protein	Code: GER; COG: COG0697 conserved hypothetical protein	putative membrane protein identified by match to protein family HMM PF00892	integral membrane domain protein identified by match to protein family HMM PF00892	probable membrane transport protein	S-adenosylmethionine transporter	Code: GER; COG: COG0697; orf conserved hypothetical protein	putative transmembrane protein similarity:fasta; with=UniProt:Q92T09_RHIME (EMBL:SME591782); Rhizobium meliloti (Sinorhizobium meliloti).; HYPOTHETICAL TRANSMEMBRANE PROTEIN.; length=307; id 64.483; 290 aa overlap; query 1-290; subject 13-302	protein of unknown function DUF6, transmembrane PFAM: protein of unknown function DUF6, transmembrane: (3.9e-30) KEGG: dra:DR0512 hypothetical protein, ev=1e-116, 71% identity	protein of unknown function DUF6, transmembrane PFAM: protein of unknown function DUF6, transmembrane: (2.7e-15) KEGG: sil:SPO0959 membrane protein, putative, ev=1e-108, 69% identity	Hypothetical transport protein YijE	hypothetical protein similarity to COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily(Evalue: 1E-22)	conserved hypothetical protein	Hypothetical protein	Hypothetical transport protein YijE	permease of the drug/metabolite transporter (DMT) superfamily	
RICPR00075	PROLINE/BETAINE TRANSPORTER	MFS type sugar transporter PFAM00083 Proline/betaine transporter	Proline/betaine transporter	MFS transporter, metabolite:H+ symporter (MHS) family protein	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	transporter, MFS superfamily	General substrate transporter PFAM: General substrate transporter; major facilitator superfamily MFS_1 KEGG: pen:PSEEN0013 major facilitator family transporter	General substrate transporter	jgi|Lotgi1|220749|estExt_Genewise1Plus.C_sca_640293	Major facilitator superfamily MFS_1	Major facilitator transporter	Proline/betaine transporter	
RICPR00076	Protein-export membrane protein secG	Protein-export membrane protein SecG	Protein-export membrane protein secG	Preprotein translocase subunit SecG	Protein-export membrane protein	Preprotein translocase subunit G	Preprotein translocase subunit SecG	Protein-export membrane protein secG	Preprotein translocase subunit SecG	Protein-export membrane protein	protein translocase subunit	Protein-export membrane protein	Protein-export membrane protein SecG	Preprotein translocase, SecG subunit	Preprotein translocase, SecG subunit	Preprotein translocase, SecG subunit	Preprotein translocase subunit SecG	Protein-export membrane protein secG	




RICPR00082	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Residues 1 to 461 of 461 are 99 pct identical to residues 1 to 461 of a 461 aa protein from Escherichia coli K12 ref: NP_415059.1 cysteine tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteine tRNA synthetase	conserved gene cysteinyl-tRNA synthetase	cysteine tRNA synthetase	Cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM TIGR00435 cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	Cysteinyl-tRNA synthetase	
RICPR00083	30S ribosomal protein S2	30S ribosomal protein s2	30S ribosomal protein S2	Residues 67 to 307 of 307 are 99 pct identical to residues 1 to 241 of a 241 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285863.1 30S ribosomal subunit protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	RpsB	30s ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	conserved gene 30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	SSU ribosomal protein S2P	30S ribosomal protein S2	identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	30S ribosomal protein S2	identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011 ribosomal protein S2	30S ribosomal protein S2	
RICPR00084	Elongation factor Ts	Elongation factor ts (EF-ts)	Elongation factor Ts	Residues 1 to 283 of 283 are 100 pct identical to residues 1 to 283 of a 283 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285864.1 protein chain elongation factor EF-Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	elongation factor ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts (EF-Ts)	conserved gene translation elongation factor Ts (EF-Ts)	Elongation factor Ts (EF-Ts)	Elongation factor Ts	identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM PF02094; match to protein family HMM TIGR00116 translation elongation factor Ts	Elongation factor Ts	EF-Ts Protein Translation Elongation Factor Ts	elongation factor EF-Ts	identified by similarity to SP:P02997; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 translation elongation factor Ts	Elongation factor Ts	translation elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	Elongation factor Ts	identified by similarity to SP:P80715; match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116 translation elongation factor Ts	

RICPR00086	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-d-manno-octulosonic acid transferase	Residues 1 to 425 of 425 are 99 pct identical to residues 1 to 425 of a 425 aa protein from Escherichia coli O157:H7 ref: NP_312535.1 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	KdtA protein	Probable 3-deoxy-d-manno-octulosonic-acid transferase transmembrane protein	3-deoxy-D-manno-octulosonic-acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	conserved gene 3-deoxy-D-manno-oct-2-ulosonic acid transferase	3-Deoxy-D-manno-oct-2-ulosonic acid transferase	identified by similarity to SP:P23282; match to protein family HMM PF04413 3-deoxy-D-manno-octulosonic acid transferase	Probable 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-D-manno-octulosonic acid transferase protein	3-deoxy-D-manno-octulosonic-acid transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)	similar to Salmonella typhi CT18 3-deoxy-D-manno-octulosonic-acid transferase 3-deoxy-D-manno-octulosonic-acid transferase	Identical to previously sequenced Chlamydophila abortus 3-deoxy-D-manno-2-octulosonic acid transferase GseA SWALL:P71136 (EMBL:U72500) (411 aa) fasta scores: E(): 1.6e-169, 100% id in 411 aa, and to Chlamydia psittaci 3-deoxy-D-manno-2-octulosonic acid GseA SWALL:Q06380 (EMBL:X69476) (411 aa) fasta scores: E(): 1.2e-163, 95.37% id in 411 aa, and to Chlamydophila caviae 3-deoxy-D-manno-2-octulosonic acid transferase KdtA or cca00611 SWALL:Q822R8 (EMBL:AE016996) (434 aa) fasta scores: E(): 9.1e-149, 80.18% id in 434 aa. Possible alternative start site at codon 23. 3-deoxy-D-manno-2-octulosonic acid transferase	similar to BRA0215, 3-deoxy-D-manno-octulosonic-acid transferase KdtA, 3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic acid transferase	3-deoxy-d-manno-octulosonic-acid transferase	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 3-deoxy-D-manno-2-octulosonate transferase	3-deoxy-D-manno-octulosonic-acid transferase	3-deoxy-D-manno-octulosonic-acid transferase	
RICPR00087	Uncharacterized protein RP090	identified by similarity to OMNI:NTL01HP00254; match to protein family HMM PF04028 conserved hypothetical protein	Putative uncharacterized protein	Putative	Uncharacterized conserved protein	Uncharacterized protein	Protein of unknown function DUF374	protein of unknown function DUF374	Putative uncharacterized protein	conserved hypothetical protein	unknown	protein of unknown function DUF374	conserved hypothetical protein	protein of unknown function DUF374	Protein of unknown function DUF374	hypothetical protein	uncharacterized protein conserved in bacteria	Hypothetical lipoprotein	protein of unknown function DUF374	Conserved hypothetical protein cytoplasmic protein	protein of unknown function DUF374 PFAM: protein of unknown function DUF374 KEGG: cte:CT1675 hypothetical protein	Conserved hypothetical protein cytoplasmic protein	Uncharacterized protein conserved in bacteria	lipoprotein identified by match to protein family HMM PF04028	conserved hypothetical protein	conserved hypothetical protein Specificity unclear	protein of unknown function DUF374 PFAM: protein of unknown function DUF374 KEGG: rpc:RPC_0399 protein of unknown function DUF374	Hypothetical protein	conserved hypothetical protein identified by match to protein family HMM PF04028	
RICPR00088	Aspartate aminotransferase	Aspartate aminotransferase a	Aspartate aminotransferase	Aminotransferases class-I	Probable aspartate aminotransferase protein	Similar to aspartate aminotransferase hypothetical protein	conserved gene aspartate aminotransferase A	Similar to aspartate aminotransferase hypothetical protein	Aspartate aminotransferase	aspartate aminotransferase	identified by similarity to SP:P53001; match to protein family HMM PF00155 aspartate aminotransferase	Aspartate aminotransferase protein	InterProMatches:IPR004838; Molecular Function: transaminase activity (GO:0008483), Biological Process: biosynthesis (GO:0009058) aspartate aminotransferase	Aspartate aminotransferase	Aspartate aminotransferase family enzyme	similar to BR1495, aspartate aminotransferase AspC, aspartate aminotransferase	Putative uncharacterized protein gbs0571	Aspartate aminotransferase a	identified by match to PFAM protein family HMM PF00155 aspartate aminotransferase	Putative aspartate aminotransferase	best blastp match gb|AAK33613.1| (AE006519) putative aspartate aminotransferase [Streptococcus pyogenes M1 GAS] putative aspartate aminotransferase	Similar to sp|Q9ZE56|AAT_RICPR sp|Q92JE7|AAT_RICCN; Ortholog to ERGA_CDS_03520 Aspartate aminotransferase (Transaminase A)	identified by similarity to SP:P23034; match to protein family HMM PF00155 aspartate aminotransferase, putative	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme aspartate aminotransferase A	Aspartate aminotransferase	COG0436 aspartate aminotransferase	Similar to Rhizobium leguminosarum aspartate aminotransferase AspC or AatA SWALL:AAT_RHILP (SWALL:O86459) (400 aa) fasta scores: E(): 3.4e-69, 50.76% id in 394 aa, and to Bacteroides thetaiotaomicron aspartate aminotransferase BT2415 SWALL:AAO77522 (EMBL:AE016936) (397 aa) fasta scores: E(): 9.3e-143, 94.45% id in 397 aa, and to Chlorobium tepidum aspartate aminotransferase, putative CT0966 SWALL:Q8KDS8 (EMBL:AE012861) (400 aa) fasta scores: E(): 1.1e-69, 47.95% id in 392 aa putative aspartate aminotransferase	aspartate aminotransferase	Aspartate aminotransferase A	
RICPR00089	Uncharacterized protein RP092	Similar to sp|Q9ZE55|Y092_RICPR rc||RC0122; Ortholog to ERWE_CDS_00190 Conserved hypothetical protein	unknown	TPR repeat	hypothetical protein identified by Glimmer2; putative	unknown	TPR domain protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	TPR domain protein identified by match to protein family HMM PF00515; match to protein family HMM PF07719	Tetratricopeptide repeat protein with 1 trp repeats	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	SAM-dependent methyltransferase	Putative uncharacterized protein	Putative uncharacterized protein	TPR domain protein	TPR domain protein	SAM-dependent methyltransferase	Methyltransferase domain family	
RICPR00090	Uncharacterized protein RP093	VacJ lipoprotein	VacJ lipoprotein	identified by similarity to SP:P43262; match to protein family HMM PF04333 VacJ lipoprotein, putative	lipoprotein precursor	similar to Salmonella typhi CT18 VacJ lipoprotein precursor VacJ lipoprotein precursor	VacJ lipoprotein	Similar to: HI0718, VACJ_HAEIN VacJ lipoprotein	Surface lipoprotein VacJ protein	VacJ lipoprotein	Lipoprotein	Putative lipoprotein	VacJ lipoprotein	identified by match to protein family HMM PF04333 vacJ lipoprotein, putative	VacJ-like lipoprotein	VacJ-like lipoprotein	VacJ-like lipoprotein	VacJ lipoprotein precursor	Code: M; COG: COG2853 lipoprotein precursor	VacJ-like lipoprotein	VacJ lipoprotein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8145644; Product type m : membrane component lipoprotein precursor	Code: M; COG: COG2853 lipoprotein precursor	putative vacJ lipoprotein identified by similarity to SP:P43262	putative intercellular spreading lipoprotein	lipoprotein precursor	VacJ-like lipoprotein	VacJ-like lipoprotein	VacJ lipoprotein precursor	
RICPR00091	Putative uncharacterized protein RP094	Putative uncharacterized protein	conserved hypothetical protein	Ttg2 Family, yrbC similar to toluene tolerance protein hypothetical protein	unknown	Toluene tolerance	Toluene tolerance	Toluene tolerance	ABC-type transporter related to toluene tolerance	Toluene tolerance precursor	ABC-type transport system involved in resistance to organic solvents, auxiliary component	toluene tolerance protein Ttg2D identified by match to protein family HMM PF05494	Toluene tolerance protein Ttg2D	toluene tolerance protein, putative identified by match to protein family HMM PF05494	toluene tolerance family protein PFAM: toluene tolerance family protein KEGG: gsu:GSU0813 hypothetical protein	Putative uncharacterized protein	Toluene tolerance family protein precursor	Hypothetical protein	Signal peptide protein, toluene tolerance protein Ttg2D	Putative uncharacterized protein	Putative toluene tolerance protein	ABC-type transporter	Putative periplasmic protein	ABC-type transporter	Putative uncharacterized protein	Putative periplasmic protein	Toluene tolerance family protein precursor	toluene transport system protein	Aspartate aminotransferase	
RICPR00092	Alanine racemase	Alanine racemase	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 alanine racemase	alanine racemase	identified by similarity to SP:P29743; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 alanine racemase	alanine racemase	Alanine racemase 1	Alanine racemase	alanine racemase ala racemase	IPR000821: Alanine racemase alanine racemase 1, biosynthetic	similar to Salmonella typhi CT18 alanine racemase alanine racemase	alanine racemase	Ortholog of S. aureus MRSA252 (BX571856) SAR2158 alanine racemase	alanine racemase	putative Alanine racemase	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 alanine racemase	alanine racemase	Alanine racemase	Alanine racemase (EC 5.1.1.1).,Provides the D- alanine required for cell wall biosynthesis (By similarity).	alanine racemase 1	Similar to Bacillus stearothermophilus alanine racemase Alr SW:ALR_BACST (P10724) (388 aa) fasta scores: E(): 4.4e-53, 43.66% id in 371 aa. Previously sequenced as Staphylococcus aureus alanine racemase Alr SW:ALR_STAAU (Q9ZAH5) (382 aa) fasta scores: E(): 1e-147, 99.47% id in 382 aa alanine racemase	Alanine racemase	alanine racemase region	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 alanine racemase	Alanine racemase	L-ALANINE = D-ALANINE. Cofactor: Pyridoxal phosphate Citation: Yokoigawa,K., Hirasawa,R., Ueno,H., Okubo,Y., Umesako,S., Soda,K., (2001) Biochem. Biophys. Res. Commun.  288:676-684 alanine racemase	alanine racemase	alanine racemase	alanine racemase identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492	
RICPR00093	UPF0393 membrane protein RP096	Putative membrane protein	Putative uncharacterized protein	Putative abc-type transport system involved in resistance to organic solvents, permease component abc transporter protein	Similar to permease of ABC transporter hypothetical protein	conserved gene toluene tolerance protein Ttg2B	Similar to permease of ABC transporter hypothetical protein	identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056 membrane protein	Probable ABC transport system permease protein	Toluene tolerance protein	CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A	Mb0173, yrbE1A, len: 265 aa. Equivalent to Rv0167, len: 265 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 265 aa overlap). yrbE1A, hypothetical unknown integral membrane protein, part of mce1 operon and member of YrbE family (see citations below for more information), highly similar to Mycobacterium tuberculosis proteins O07791|Rv0587|MTCY19H5.35|yrbE2A (265 aa); O53965|Rv1964|MTV051.02|yrbE3A (265 aa); etc. Also highly similar or similar to conserved hypothetical integral membrane proteins of yrbEA type, e.g.  NP_302654.1|NC_002677 conserved membrane protein from Mycobacterium leprae (267 aa); P45030|YRBE_HAEIN|HI1086 hypothetical protein from Haemophilus influenzae (261 aa), FASTA scores: opt: 328, E(): 1.8e-15, (26.6% identity in 244 aa overlap); etc. CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE1A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark toluene tolerance protein	ABC-type transport system involved in resistance to organic solvents, permease component	Similar to Pseudomonas putida toluene tolerance protein Ttg2B SWALL:Q9Z401 (EMBL:AF106002) (265 aa) fasta scores: E(): 2.7e-20, 34.72% id in 216 aa, and to Chlamydophila caviae ABC transporter, permease protein, putative cca00628 SWALL:Q822Q1 (EMBL:AE016996) (263 aa) fasta scores: E(): 1.3e-90, 93.84% id in 260 aa, and to Pirellula sp probable permease of ABC transporter rb7135 SWALL:CAD75200 (EMBL:BX294145) (296 aa) fasta scores: E(): 1.1e-24, 41.66% id in 204 aa putative permease component of ABC transporter	Toluene tolerance protein	ABC transporter, permease subunit, toluene tolerance protein	Putative ABC transport inner membrane subunit	conserved family - putative ABC-type transport protein hypothetical protein	Putative uncharacterized protein	involved in resistance to organic solvents; COG0767 ABC-type transport system permease component	Similar to: HI1086, YRBE_HAEIN conserved ABC-type transport system protein, permease component	Toluene tolerance ABC efflux transporter, permease	ABC-type transport system involved in resistance to organic solvents, permease component	predicted ABC-type transport system involved in resistance to organic solvents, permease component	toluene tolerance protein	ABC transporter permease protein	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 toluene tolerance ABC efflux transporter, permease	Protein of unknown function DUF140	
RICPR00094	POSSIBLE RIBONUCLEOTIDE TRANSPORT ATP-BINDING PROTEIN MKL	Ribonucleotide ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	Ribonucleotide-transport ATP-binding protein ABC transporter, Mkl	Transporter	Possible ribonucleotide ABC transporter, ATP- binding	ABC transporter related	Ribonucleotide ABC transporter ATP-binding protein	Ribonucleotide ABC transporter ATP-binding protein	
RICPR00095	Uncharacterized protein RP098	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Alanine racemase	Hypothetical membrane protein	
RICPR00096	50S ribosomal protein L28	50S ribosomal protein L28	identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009 ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	Ribosomal protein L28	Ribosomal protein L28	50S ribosomal protein L28	similar to BR2015, ribosomal protein L28 RpmB, ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	Similar to sp|Q8U9V8|RL28_AGRT5 sp|Q9FDL9|RL28_ZYMMO sp|Q8YJM6|RL28_BRUME sp|Q98FZ7|RL28_RHILO sp|Q92MF4|RL28_RHIME rp||rpmB; Ortholog to ERGA_CDS_05500 50S ribosomal protein L28	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 50S ribosomal protein L28	COG0227 RpmB ribosomal protein L28; go_component: 0005840 50S ribosomal protein L28	50S ribosomal protein L28	Similar to AAP19069 (RL28_ECOLI) 50S ribosomal subunit protein L28 from E. coli (78 aa). FASTA: opt: 417 Z-score: 594.8 E(): 2.8e-25 Smith-Waterman score: 417; 77.922 identity in 77 aa overlap 50S ribosomal protein L28	50S ribosomal protein L28	50S ribosomal protein L28	LSU ribosomal protein L28P	50S ribosomal protein L28	Similar to sp|Q8U9V8|RL28_AGRT5 sp|Q9FDL9|RL28_ZYMMO sp|Q8YJM6|RL28_BRUME sp|Q98FZ7|RL28_RHILO sp|Q92MF4|RL28_RHIME rp||rpmB; Ortholog to ERWE_CDS_05610 50S ribosomal protein L28	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 ribosomal protein L28	identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009 ribosomal protein L28	Ribosomal protein L28	50S ribosomal protein L28	Best Blastp Hit: pir||D81212 50S ribosomal protein L28 NMB0321 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225542|gb|AAF40766.1| (AE002389) 50S ribosomal protein L28 [Neisseria meningitidis MC58] >gi|7380787|emb|CAB85378.1| (AL162758) 50S ribosomal protein L28 [Neisseria meningitidis] COG0227 Ribosomal protein L28; RpmB putative 50S ribosomal protein L28	ribosomal protein L28	Ribosomal protein L28	
RICPR00097	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	LSU ribosomal protein L31P	50S ribosomal protein L31	50S ribosomal protein L31	50S ribosomal protein L31	
RICPR00098	Probable GTP-binding protein engB	GTP-binding protein cgpa	Probable GTP-binding protein engB	Residues 1 to 210 of 210 are 99 pct identical to residues 1 to 210 of a 210 aa protein ENGB_ECOLI sp: P24253 probable GTP-binding protein EngB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Similar to GTP-binding protein hypothetical protein	conserved gene GTP binding protein EngB	Similar to GTP-binding protein hypothetical protein	Probable GTP-binding protein engB	identified by match to protein family HMM TIGR00650 GTP-binding protein, EngB family	GTP-binding protein YihA	GTP-binding protein	Probable GTP-binding protein engB	GTP-binding protein	Probable GTP-binding protein engB	Probable GTP-binding protein engB	Probable GTP-binding protein engB	identified by match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein	GTP binding protein eesential for cell growth; Molecular Function: GTP binding (GO:0005525), Molecular Function: GTP binding (GO:0005525) GTP-binding domain,Small GTP-binding protein domain	COG0218 Predicted GTPase GTP-binding protein ENGB family	Probable GTP-binding protein engB	IPR005289: GTP-binding domain putative GTPase, involved in coordination of cell cycle	Predicted GTPase	

RICPR00099	VIRB4 PROTEIN	Legionella vir homologue protein	conserved gene LvhB4	Legionella vir homologue protein	Conjugal transfer protein	Type IV secretion protein	Type IV secretory pathway, VirB4 components	similar to BRA0066, type IV secretion system protein VirB4 type IV secretion system protein VirB4	CAG pathogenicity island protein 23	TriC protein	Similar to rp||virB4 sp|P17794|VIB4_AGRT5 sp|P05353|VIB4_AGRTU; Ortholog to ERGA_CDS_05400 VIRB4 protein precursor	COG3451 VirB4 type IV secretory pathway, VirB4 components similar to AAM00407.1 other copies include: AM1053 VirB4 protein	VirB4 ATPase	VirB4 protein	Similar to rp||virB4 sp|P17794|VIB4_AGRT5 sp|P05353|VIB4_AGRTU; Ortholog to ERWE_CDS_05510 VIRB4 protein precursor	identified by match to protein family HMM PF03135 conjugal transfer protein	Type IV secretion/conjugal transfer ATPase, VirB4 family	CagE, TrbE, VirB family component of typeIV transporter system	Shikimate kinase:ATP/GTP-binding site motif A (P-loop):CagE, TrbE, VirB family component of type IV transporter system	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	VirB4	putative crown gall-like type IV secretion system protein similarity:fasta; with=UniProt:VIRB4_AGRT5 (EMBL:AE007923); Agrobacterium tumefaciens (strain C58/ATCC 33970).; VirB4 protein precursor.; length=789; id 30.066; 755 aa overlap; query 35-771; subject 16-754 similarity:fasta; with=UniProt:Q8KW29_9RHOB (EMBL:AF416331); Ruegeria sp. PR1b.; RC161.; length=796; id 38.501; 787 aa overlap; query 11-787; subject 12-792 This CDS overlaps 26 nt at the N-terminus with pRL70151	Type IV secretion/conjugal transfer ATPase, VirB4 family	type IV secretion system protein VirB4	CagE, TrbE, VirB component of type IV transporter system PFAM: CagE, TrbE, VirB component of type IV transporter system: (3.2e-19) SMART: ATPase: (1.2e-07) KEGG: ccr:CC2419 type IV secretion system protein B4, putative, ev=1e-100, 34% identity	type IV secretion system protein VirB4 identified by similarity to GB:AAM00407.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	transport secretion system IV, VirB4 protein similar to virB4 (SMa1315) [Sinorhizobium meliloti]; putative location:bacterial cytoplasm Psort-Score: 0.1323; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135; match to protein family HMM TIGR00929	type IV secretion system protein B4, putative COG3451 Type IV secretory pathway, VirB4 components	
RICPR00100	Uncharacterized protein RP104	VirB6	Type IV secretion system protein	Putative uncharacterized protein	VirB6	VirB6	TrbL/VirB6 plasmid Conjugative transfer protein	channel protein	TrbL/VirB6 plasmid Conjugative transfer protein	Type IV secretion system protein VirB6	VirB6a protein	
RICPR00101	Uncharacterized protein RP105	VirB6	Putative uncharacterized protein	VirB6	VirB6	TrbL/VirB6 plasmid Conjugative transfer protein	channel protein	TrbL/VirB6 plasmid Conjugative transfer protein	
RICPR00101	Uncharacterized protein RP105	VirB6	Putative uncharacterized protein	VirB6	VirB6	TrbL/VirB6 plasmid Conjugative transfer protein	channel protein	TrbL/VirB6 plasmid Conjugative transfer protein	
RICPR00102	Uncharacterized protein RP106	VirB6	Type IV secretion system protein	Putative uncharacterized protein	VirB6	VirB6	Putative uncharacterized protein	channel protein	VirB6-like protein of the type IV secretion system	Type IV secretion system protein VirB6	VirB6c protein	
RICPR00103	Uncharacterized protein RP107	VirB6	Type IV secretion system protein	Putative uncharacterized protein	VirB6	TrbL/VirB6 plasmid Conjugative transfer protein	channel protein	Putative uncharacterized protein	Type IV secretion system protein VirB6	VirB6d protein	
RICPR00104	Uncharacterized lipoprotein RP108	VirB6	Putative uncharacterized protein	VirB6	TrbL/VirB6 plasmid Conjugative transfer protein	channel protein	Putative uncharacterized protein	VirB6e protein	
RICPR00105	Phosphate acetyltransferase	Phosphate acetyltransferase	InterProMatches:IPR002505; branched-chain fatty acid biosynthesis, Biological Process: metabolism (GO:0008152), Molecular Function: acyltransferase activity (GO:0008415) phosphate butyryltransferase	Similar to Rhizobium meliloti phosphate acetyltransferase Pta SWALL:PTA_RHIME (SWALL:Q9X448) (316 aa) fasta scores: E(): 1.3e-24, 35.39% id in 226 aa, and to Bacteroides thetaiotaomicron phosphate butyryltransferase BT2551 SWALL:Q8A4P6 (EMBL:AE016936) (314 aa) fasta scores: E(): 1.9e-107, 92.97% id in 299 aa putative phosphate acetyl/butyryltransferase	Phosphate acetyltransferase (Phosphotransacetylase)	phosphate butyryltransferase	Phosphate acetyl/butaryl transferase:MaoC-like dehydratase	Phosphate acetyltransferase Pta	Pfam: (1) MaoC like domain (N-proximal), (2) phosphate acetyl/butaryl transferase (C-proximal). Phosphate acetyl/butaryl transferase	phosphate acetyltransferase	Phosphate butyryltransferase	Phosphate acetyltransferase Pta split gene	Phosphate acetyltransferase	Phosphate butyryltransferase	Phosphate butyryltransferase	phosphate acetyl/butyryltransferase family protein identified by match to protein family HMM PF01515; match to protein family HMM PF01575	phosphate butyryltransferase identified by match to protein family HMM PF01515; match to protein family HMM TIGR02706	hypothetical protein similarity to COG0280 Phosphotransacetylase(Evalue: 1E-66)	phosphate butyryltransferase identified by similarity to SP:Q05624; match to protein family HMM PF01515; match to protein family HMM TIGR02706	phosphate acetyl/butaryl transferase	Phosphate acetyltransferase	phosphate butyryltransferase	Phosphate butyryltransferase PFAM: phosphate acetyl/butaryl transferase KEGG: phosphate acetyl/butyryltransferase family protein	Phosphate butyryltransferase	Phosphate butyryltransferase PFAM: phosphate acetyl/butaryl transferase KEGG: lpp:lpp2215 phosphate acetyltransferase	phosphate butyryltransferase, putative	Phosphate butyryltransferase	Phosphate butyryltransferase	Phosphate acetyltransferase PFAM: phosphate acetyl/butaryl transferase KEGG: bcn:Bcen_3494 phosphate acetyltransferase	
RICPR00106	Acetate kinase	acetate kinase	conserved gene acetate kinase	acetate kinase	Acetate kinase	acetate kinase	Probable member of the acetate kinase family	Acetate kinase	similar to BRA0386, acetate kinase, hypothetical hypothetical acetate kinase	Acetate kinase	acetate kinase, putative	Acetate kinase	Acetate kinase	acetate kinase	Acetate kinase	acetate kinase	Acetate and butyrate kinase:Acetate kinase	Acetate kinase	acetate kinase identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016	Acetate kinase	acetate kinase	acetate kinase	acetate kinase identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016	acetate kinase	acetate kinase	Acetate kinase	acetate kinase TIGRFAM: acetate kinase: (2.4e-179) PFAM: acetate and butyrate kinase: (1e-182) KEGG: dra:DR2602 acetate kinase, ev=1e-149, 69% identity	Acetate kinase	Acetate kinase	
RICPR00107	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-n1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	Residues 1 to 255 of 255 are 100 pct identical to residues 1 to 255 of a 255 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289160.1 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-n1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	Highly similar to tRNA (guanine-N1)-methyltransferase hypothetical protein	conserved gene tRNA (guanine N1) methyltransferase	Highly similar to tRNA (guanine-N1)-methyltransferase hypothetical protein	tRNA (guanine-N(1)-)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (Guanine-N(1)-)-methyltransferase	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (Guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088 tRNA (guanine-N1)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	tRNA (guanine-N(1)-)-methyltransferase	
RICPR00108	50S ribosomal protein L19	50S ribosomal protein l19	50S ribosomal protein L19	Residues 1 to 115 of 115 are 100 pct identical to residues 1 to 115 of a 115 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289159.1 50S ribosomal subunit protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50s ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	conserved gene 50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	LSU ribosomal protein L19P	identified by similarity to SP:P30529; match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	50S ribosomal protein L19	identified by similarity to SP:P30529; match to protein family HMM PF01245; match to protein family HMM TIGR01024 ribosomal protein L19	50S ribosomal protein L19	
RICPR00109	UPF0335 protein RP113	identified by similarity to GB:BAB50739.1 conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized protein conserved in bacteria	similar to BR1752, conserved hypothetical protein conserved hypothetical protein	UPF0335 protein BQ12070	Similar to sp|Q9ZE35|Y113_RICPR sp|O05113|Y113_METEX; Ortholog to ERGA_CDS_04680 Conserved hypothetical protein	Similar to sp|Q9ZE35|Y113_RICPR sp|O05113|Y113_METEX; Ortholog to ERWE_CDS_04780 Conserved hypothetical protein	unknown	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	COG3750: Uncharacterized protein conserved in bacteria. conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	unknown	conserved hypothetical protein similarity:fasta; with=UniProt:Y2793_RHIME (EMBL:SME591791); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical UPF0335 protein R02793.; length=90; id 85.185; 81 aa overlap; query 1-81; subject 1-81	conserved hypothetical protein	conserved hypothetical protein	hypothetical conserved protein similar to SMc04009 [Sinorhizobium meliloti] Similar to swissprot:Q92M59 Putative location:bacterial cytoplasm Psort-Score: 0.3600	conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein identified by similarity to SP:O05113	conserved hypothetical protein	Hypothetical protein	hypothetical protein COG3750 Uncharacterized protein conserved in bacteria	Uncharacterized protein conserved in bacteria	conserved hypothetical protein	conserved hypothetical protein KEGG: rru:Rru_A1042 hypothetical protein	
RICPR00110	Protein-export membrane protein secF	Residues 1 to 338 of 338 are 99 pct identical to residues 1 to 338 of a 338 aa protein from Escherichia coli gb: AAB40165.1 protein-export membrane protein secF	Protein-export membrane protein SecF	SecF; protein-export membrane protein	protein-export membrane protein SecF	Probable-export membrane transmembrane protein	Protein-export membrane protein SecF	Similar to protein-export membrane protein SecF hypothetical protein	conserved gene protein export protein SecF	Similar to protein-export membrane protein SecF hypothetical protein	protein-export membrane protein SecF	identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966 protein-export membrane protein SecF	Protein-export membrane protein SecF	Protein-export membrane protein	identified by similarity to SP:O26073; match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966 protein-export membrane protein SecF	SecF	Protein-export membrane protein secF	Mb2617c, secF, len: 442 aa. Equivalent to Rv2586c, len: 442 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 442 aa overlap). Probable secF, protein-export membrane protein (integral membrane protein), equivalent to P38386|SECF_MYCLE|SECF|ML0488|MLCB1259.06|B1177_C3_239 PROTEIN-EXPORT MEMBRANE PROTEIN from Mycobacterium leprae (471 aa), FASTA scores: opt: 1910, E(): 2.9e-104, (72.15% identity in 456 aa overlap). Also similar to others e.g.  Q9AE06|SECF from Corynebacterium glutamicum (Brevibacterium flavum) (403 aa), FASTA scores: opt: 1198, E(): 9.8e-63, (47.1% identity in 399 aa overlap); Q53956|SECF_STRCO|SCL2.05c from Streptomyces coelicolor (373 aa), FASTA scores: opt: 670, E(): 6.4e-32, (39.25% identity in 400 aa overlap); Q55611|SECF_SYNY3|SLR0775 from Synechocystis sp. strain PCC 6803 (315 aa), FASTA scores: opt: 416, E(): 3.8e-17, (33.8% identity in 296 aa overlap); etc. BELONGS TO THE SECD/SECF FAMILY, SECF FAMILY. PART OF THE PROKARYOTIC PROTEIN TRANSLOCATION APPARATUS WHICH COMPRISE SECA|Rv3240c, SECD|Rv2587c, SECE|Rv0638, SECF, SECG|Rv1440 AND SECY|Rv0732. PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECF	preprotein translocase subunit F	Protein-export membrane protein SecF	preprotein translocase, IISP family, membrane subunit	Preprotein translocase subunit SecF	similar to Salmonella typhi CT18 protein-export membrane protein SecF protein-export membrane protein SecF	Preprotein translocase subunits SecF	Protein-export membrane protein	Protein-export membrane protein secF	Preprotein translocase, IISP family, membrane subunit	Hypothetical protein	Protein-export membrane protein	
RICPR00111	NADH-quinone oxidoreductase subunit F	NADH dehydrogenase I F subunit	Respiratory-chain NADH dehydrogenase 51 Kd subunit	Probable nadh dehydrogenaseI(Chain f) oxidoreductase protein	NADH dehydrogenase I chain F	conserved gene NADH dehydrogenase I, F subunit	NADH dehydrogenase I chain F	identified by similarity to SP:O07948; match to protein family HMM PF01512; match to protein family HMM TIGR01959 NADH-quinone oxidoreductase, F subunit	NADH-ubiquinone oxidoreductase, chain F	NADH-ubiquinone oxidoreductase, NQO1 subunit	NuoF	NADH-quinone oxidoreductase, F subunit	NADH-quinone oxidoreductase subunit F	Mb3174, nuoF, len: 445 aa. Equivalent to Rv3150, len: 445 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 445 aa overlap). Probable nuoF, NADH dehydrogenase, chain F (EC 1.6.5.3), similar to others e.g. Q9XAQ9|NUOF_STRCO from Streptomyces coelicolor (449 aa), FASTA scores: opt: 2314, E(): 3.5e-139, (76.25% identity in 434 aa overlap); NUF2_RHIME from Rhizobium meliloti (421 aa), FASTA scores: opt: 1545, E(): 1.8e-90, (53.1% identity in 424 aa overlap); Q9RU92|DR1500 from Deinococcus radiodurans (444 aa), FASTA scores: opt: 1445, E(): 4.1e-84, (52.9% identity in 427 aa overlap); etc.  Contains respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2 (PS00645). BELONGS TO THE COMPLEX I 51 KDA SUBUNIT FAMILY. COFACTOR: FMN AND ONE 4FE-4S CLUSTER (PROBABLE). PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN F)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO1 subunit	NADH:ubiquinone oxidoreductase, NADH-binding, chain F	similar to BR0807, NADH dehydrogenase I, F subunit NuoF, NADH dehydrogenase I, F subunit	NADH-ubiquinone oxidoreductase NQO1 subunit	NADH dehydrogenase I, F subunit	NADH dehydrogenase I chain F	Similar to sp|Q9ZE33|NUOF_RICPR sp|Q92JB2|NUOF_RICCN; Ortholog to ERGA_CDS_04930 NADH-quinone oxidoreductase chain F	COG1894 NuoF NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit similar to NP_220507.1 NADH dehydrogenase chain F	Similar to Q83BR0 NADH dehydrogenase I, F subunit from Coxiella burnetti (422 aa). FASTA: opt: 1851 Z-score: 2306.0 E(): 1.5e-120 Smith-Waterman score: 1851; 61.848 identity in 422 aa overlap NADH dehydrogenase I, F subunit	NADH-ubiquinone oxidoreductase 51 kDa subunit precursor	NADH dehydrogenase I, chain F	NADH-ubiquinone oxidoreductase NQO1 subunit	NADH Dehydrogenase I Chain F	NADH-ubiquinone oxidoreductase chain F	
RICPR00112	Signal peptidase I	Signal peptidase I	Residues 1 to 324 of 324 are 100 pct identical to residues 1 to 324 of a 324 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289126.1 leader peptidase (signal peptidase I)	Signal peptidase I	Signal peptidase I	Signal peptidase IB	LepB protein	Signal peptidase I	Signal peptidase I	Signal peptidase I	conserved gene signal peptidase I (lepB-1)	Signal peptidase I	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 signal peptidase I	Signal peptidase I	Signal peptidase I	identified by similarity to SP:P00803; match to protein family HMM PF00461 signal peptidase I	Signal peptidase I	signal peptidase I	Signal peptidase I	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark signal peptidase I	IPR000223: Bacterial signal peptidase S26A; IPR000508: Signal peptidase leader peptidase (signal peptidase I), serine protease	Signal peptidase I	similar to Salmonella typhi CT18 signal peptidase I signal peptidase I	similar to BR0660, signal peptidase I signal peptidase I	Signal peptidase I	Signal peptidase I	type-1 signal peptidase 1B	Signal peptidase I	Signal peptidase I	
RICPR00113	Ribonuclease 3	Ribonuclease III	Ribonuclease 3	Residues 1 to 226 of 226 are 100 pct identical to residues 1 to 226 of a 226 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289124.1 RNase III, ds RNA	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Ribonuclease 3	Similar to ribonuclease III hypothetical protein	conserved gene ribonuclease III	Similar to ribonuclease III hypothetical protein	Ribonuclease 3	identified by similarity to EGAD:37838; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	Ribonuclease III	ribonuclease III	identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	ribonuclease III	Ribonuclease 3	Ribonuclease III	Ribonuclease 3	DsRNA-specific ribonuclease/ribonuclease III	identified by similarity to SP:P51833; match to protein family HMM PF00035; match to protein family HMM PF00636 ribonuclease III	Ribonuclease 3	Ribonuclease III	
RICPR00114	GTP-binding protein era homolog	GTP-binding protein era homolog	Residues 1 to 301 of 301 are 99 pct identical to residues 1 to 301 of a 301 aa protein from Escherichia coli K12 ref: NP_417061.1 GTP-binding protein	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era homolog	Era	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-binding protein era	Similar to GTPases hypothetical protein	conserved gene GTP-binding protein Era	Similar to GTPases hypothetical protein	GTP-binding protein era homolog	identified by similarity to EGAD:30708; match to protein family HMM PF00013; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650 GTP-binding protein Era	GTP-binding protein era homolog	GTP-binding protein era	GTP-binding protein ERA homolog	GTP-binding protein Era	GTP-binding protein era homolog	GTP-binding protein	GTP-binding protein era homolog	GTP-binding protein era homolog	GTP-BINDING PROTEIN ERA HOMOLOG	GTPase, Era homolog	identified by similarity to SP:P42182; match to protein family HMM PF00013; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436 GTP-binding protein Era	GTP-binding protein era homolog	GTP-binding protein Era	GTP-binding protein era homolog	
RICPR00115	Crossover junction endodeoxyribonuclease ruvC	Putative holliday junction endodeoxyribonuclease protein	Residues 2 to 174 of 174 are 98 pct identical to residues 1 to 173 of a 173 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288300.1 Holliday junction nuclease; resolution of structures; repair	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	conserved gene crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	holliday junction resolvase RuvC	identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease ruvC	identified by similarity to SP:Q51424; match to protein family HMM PF02075; match to protein family HMM TIGR00228 crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	Mb2625c, ruvC, len: 188 aa. Equivalent to Rv2594c, len: 188 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 188 aa overlap). Probable ruvC, Holliday junction resolvase (EC 3.1.22.4) (see citations below), equivalent to P40834|RUVC_MYCLE|ML0481|B1177_C3_226 CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE from Mycobacterium leprae (188 aa), FASTA scores: opt: 984, E(): 2.3e-55, (81.0% identity in 184 aa overlap). Also highly similar to others e.g.  Q9AE11|RUVC from Corynebacterium glutamicum (Brevibacterium flavum) (221 aa), FASTA scores: opt: 713, E(): 3.6e-38, (56.9% identity in 188 aa overlap); Q9L289|RUVC_STRCO|SCL2.10c from Streptomyces coelicolor (188 aa), FASTA scores: opt: 704, E(): 1.2e-37, (60.65% identity in 178 aa overlap); P24239|RUVC_ECOLI|B1863 from Escherichia coli strain K12 (172 aa), FASTA scores: opt: 322, E(): 1.6e-13, (38.65% identity in 163 aa overlap); etc. BELONGS TO THE RUVC FAMILY. COFACTOR: MAGNESIUM. PROBABLE CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (HOLLIDAY JUNCTION NUCLEASE) (HOLLIDAY JUNCTION RESOLVASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark holliday junction resolvase; endodeoxyribonuclease	Crossover junction endodeoxyribonuclease ruvC	IPR002176: Crossover junction endodeoxyribonuclease RuvC Holliday junction nuclease	Holliday junction resolvasome, endonuclease subunit, RuvC	similar to Salmonella typhi CT18 crossover junction endodeoxyribonuclease crossover junction endodeoxyribonuclease	Similar to Chlamydia trachomatis crossover junction endodeoxyribonuclease RuvC or ct502 SWALL:RUVC_CHLTR (SWALL:O84510) (170 aa) fasta scores: E(): 9.3e-41, 69.18% id in 159 aa, and to Escherichia coli, and Escherichia coli O157:H7 crossover junction endodeoxyribonuclease RuvC SWALL:RUVC_ECOLI (SWALL:P24239) (172 aa) fasta scores: E(): 4.2e-16, 40.62% id in 160 aa putative crossover junction endodeoxyribonuclease RuvC	Crossover junction endodeoxyribonuclease ruvC	similar to BR1704, crossover junction endodeoxyribonuclease RuvC RuvC, crossover junction endodeoxyribonuclease	
RICPR00116	Uncharacterized protein RP120	Predicted nucleoside-diphosphate-sugar epimerase	unknown	Putative nucleoside-diphosphate-sugar epimerase	Protein of unknown function DUF1022	Hypothetical protein	Hypothetical protein	Predicted nucleoside-diphosphate-sugar epimerase	nucleoside-diphosphate-sugar epimerase-like protein KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase	nucleoside-diphosphate-sugar epimerase-like protein KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase	Putative uncharacterized protein	Putative nucleoside-diphosphate-sugar epimerase	Putative nucleoside-diphosphate-sugar epimerase	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Predicted nucleoside-diphosphate-sugar epimerase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00117	Protein mrp homolog	ATPase involved in chromosome partitioning, ParA/MinD family, Mrp homolog	Probable mrp atpase involved in chromosome partitioning protein	Mrp/NBP35 family protein	Polysaccharide export protein	identified by similarity to SP:P21590; match to protein family HMM PF01883 ATP/GTP-binding protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	ATPase involved in chromosome partitioning	Putative ATP/GTP-binding protein	similar to BR0057, mrp-related protein mrp-related protein	Putative uncharacterized protein	Mrp protein	Mrp protein homolog	Similar to sp|O66946|MRP_AQUAE sp|P21590|MRP_ECOLI sp|P45135|MRP_HAEIN sp|P72190|YCAB_PSEFR; Ortholog to ERGA_CDS_08240 Mrp protein	universally conserved ATP-binding protein	conserved family - putative ATPase involved in chromosome partitioning hypothetical protein	iron-sulfur cluster assembly/repair protein ApbC	ATPase involved in chromosome partitioning	Mrp-ATPases involved in chromosome partitioning	conserved hypothetical protein	probable ATPase	Mrp protein, an ATPase involved in chromosome partitioning	ATPase	go_function: nucleotide binding [goid 0000166] nucleotide binding protein, putative	Similar to sp|O66946|MRP_AQUAE sp|P21590|MRP_ECOLI sp|P45135|MRP_HAEIN sp|P72190|YCAB_PSEFR; Ortholog to ERWE_CDS_08350 Mrp protein	conserved hypothetical protein	Protein of unknown function DUF59 Cobyrinic acid a,c-diamide synthase	Protein of unknown function DUF59	Mrp protein	
RICPR00118	HFLK PROTEIN	Residues 1 to 419 of 419 are 99 pct identical to residues 1 to 419 of a 419 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290804.1 protease specific for phage lambda cII repressor	Putative membrane protein	Band 7 protein	HflK protein	Putative membrane protease subunits, stomatin/prohibitin homologs transmembrane protein	Protease specific for phage lambda cII repressor	protease subunit HflK	conserved gene HflK protein	protease subunit HflK	identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 HflK protein	Probable transmembrane protein HflK	Integral membrane protease	Hydrolase serine protease transmembrane subunit K protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark integral membrane protease subunit	IPR001972: Stomatin HflK, with HflC, part of modulator for protease specific for FtsH phage lambda cII repressor	Membrane protease subunit, stomatin/prohibitin homolog	similar to Salmonella typhi CT18 HflK protein HflK protein	similar to BR1397, hflK protein HflK, hflK protein	Integral membrane protease subunit	Protease subunit hflK	Putative membrane protein	Lambda CII stability-governing protein	Similar to rc||hflK rp||hflK sp|Q9KV09|HFLK_VIBCH sp|P40605|HFLK_VIBPA; Ortholog to ERGA_CDS_08410 Protease activity modulator hflk	COG0330 HflC membrane protease subunits stomatin/prohibitin homologs similar to NP_220514.1 other copies include: AM925 hflK protein	HflK protein	protease activity modulator HflK	Similar to: HI0151, HFLK_HAEIN HflK	Membrane protease subunits, stomatin/prohibitin similarity HflC protein	
RICPR00119	HFLC PROTEIN	Residues 1 to 334 of 334 are 100 pct identical to residues 1 to 334 of a 334 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290805.1 protease specific for phage lambda cII repressor	Putative membrane protein	Band 7 protein	HflC protein	Putative serine protease transmembrane protein	Lambda CII stability-governing protein HflC	membrane protease subunit HflC	conserved gene HflC protein	membrane protease subunit HflC	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 HflC protein	HflC protein	Integral membrane proteinase	Hydrolase serine protease transmembrane subunit C protein	HflC protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark integral membrane proteinase subunit	HflC, with HflK, part of modulator for protease specific for FtsH phage lambda cII repressor	Membrane protease subunit, stomatin/prohibitin homolog	similar to Salmonella typhi CT18 HflC protein HflC protein	similar to BR1396, hflC protein HflC, hflC protein	Integral membrane proteinase subunit	FtsH protease activity modulator hflC	Putative membrane protein	Lambda CII stability-governing protein	Similar to rc||hflC rp||hflC sp|P44545|HFLC_HAEIN sp|Q9KV08|HFLC_VIBCH sp|P40606|HFLC_VIBPA; Ortholog to ERGA_CDS_08420 Hflc protein	COG0330 HflC membrane protease subunits stomatin/prohibitin homologs similar to NP_220515.1 hflC protein	HflC protein	protease activity modulator HflC	Similar to: HI0150, HFLC_HAEIN HflC	
RICPR00120	Probable serine protease do-like	Probable serine protease do-like	MucD; serine protease MucD	Probable periplasmic protease signal peptide protein	Protease DegQ	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 periplasmic serine protease, DO/DeqQ family	identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595 protease DO	Serine protease DO-like protein	Trypsin-like serine protease	similar to BR1394, serine protease Do, hypothetical serine protease Do, hypothetical	Periplasmic serine protease Do, heat shock protein	Putative periplasmic serine protease	Periplasmic serine protease DO	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme HtrA-like serine protease	conserved family - putative serine protease hypothetical protein	Putative serine protease, MucD	typically periplasmic; COG0265 trypsin-like serine protease	Similar to: HI1259, HTOA_HAEIN probable periplasmic serine protease do/HhoA-like precursor	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain DegQ protein	Alginate biosynthesis negative regulator, serine protease AlgY	contains two C-terminal PDZ domains Periplasmic trypsin-like serine protease	Probable serine protease do-like	putative serine protease MucD	probable periplasmic serine protease DO-like precursor	identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 S1C (protease Do) subfamily peptidase MucD	Peptidase S1C, Do	Periplasmic serine protease	Best Blastp Hit: pir||B81914 probable periplasmic serine proteinase (EC 3.4.21.-) NMA0710 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379434|emb|CAB83996.1| (AL162754) putative periplasmic serine protease [Neisseria meningitidis] COG0265 Trypsin-like serine proteases, typically putative serine protease	peptidase S1C, Do	
RICPR00121	UPF0176 protein RP125	hypothetical protein	Residues 1 to 334 of 334 are 99 pct identical to residues 17 to 350 of a 350 aa protein from Escherichia coli K12 ref: NP_415573.1 orf, conserved hypothetical protein	UPF0176 protein SAV2689	UPF0176 protein WIGBR0650	UPF0176 protein plu1816	similar to unknown protein hypothetical protein	conserved gene rhodanese domain protein	Similar to unknown protein hypothetical protein	identified by match to protein family HMM PF00581 rhodanese-like domain protein	Rhodanese-related sulfurtransferases	hypothetical protein	identified by match to protein family HMM PF00581 rhodanese-like domain protein	conserved hypothetical protein	Hypothetical UPF0176 protein SE0262	UPF0176 protein Pro_1101	Rhodanese-related sulfurtransferase protein	conserved hypothetical protein with rhodanese domain	sulfurtransferase	UPF0176 protein ymdE	IPR001763: Rhodanese-like putative enzyme related to sulfurtransferases	Predicted sulfurtransferase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BRA0086, rhodanese family protein rhodanese family protein	UPF0176 protein gbs1504	UPF0176 protein BQ10070	conserved hypotehtical protein	identified by match to PFAM protein family HMM PF00581 rhodanese-like domain protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2771 conserved hypothetical protein	
RICPR00122	Succinate dehydrogenase cytochrome b556 subunit	Succinate dehydrogenase cytochrome b-556 subunit	conserved gene succinate dehydrogenase cytochrome b556 subunit C	identified by match to protein family HMM PF01127 succinate dehydrogenase, cytochrome b556 subunit	Succinate dehydrogenase cytochrome b-556 subunit	Succinate dehydrogenase, membrane anchor subunit	Succinate dehydrogenase, cytochrome b556 subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinate dehydrogenase membrane anchor subunit	Succinate dehydrogenase subunit C sdhC	similar to BR1904, succinate dehydrogenase, cytochrome b556 subunit SdhC, succinate dehydrogenase, cytochrome b556 subunit	Succinate dehydrogenase membrane anchor subunit	Succinate dehydrogenase cytochrome b560 subunit	Succinate dehydrogenase cytochrome b-556 subunit	Similar to sp|P41085|DHSC_RICPR sp|P70097|C560_CRIGR sp|Q9CZB0|C560_MOUSE rc||sdhC; Ortholog to ERGA_CDS_01840 Succinate dehydrogenase cytochrome B-556 subunit	COG2009 SdhC succinate dehydrogenase/fumarate reductase cytochrome b subunit similar to AAL60178.1 succinate dehydrogenase cytochrome b556 subunit	succinate dehydrogenase membrane anchor subunit	Succinate dehydrogenase cytochrome b	Similar to sp|P41085|DHSC_RICPR sp|P70097|C560_CRIGR sp|Q9CZB0|C560_MOUSE rc||sdhC; Ortholog to ERWE_CDS_01890 Succinate dehydrogenase cytochrome B-556 subunit	Succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase cytochrome b-556 subunit	succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase cytochrome b-556 subunit	Succinate dehydrogenase subunit C	succinate dehydrogenase, cytochrome b subunit	succinate dehydrogenase, cytochrome b556 subunit identified by similarity to SP:P10446; match to protein family HMM PF01127	succinate dehydrogenase cytochrome b-556 subunit	succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa [Source:HGNC Symbol;Acc:10682]	
RICPR00123	Succinate dehydrogenase hydrophobic membrane anchor subunit	Succinate dehydrogenase, membrane anchor subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinate dehydrogenase membrane anchor subunit	Succinate dehydrogenase subunit D sdhD, hydrophobic membrane anchor protein	similar to BR1903, succinate dehydrogenase, hydrophobic membrane anchor protein succinate dehydrogenase, hydrophobic membrane anchor protein	Succinate dehydrogenase membrane anchor subunit	Succinate dehydrogenase hydrophobic membrane anchor protein	Similar to sp|Q92J98|DHSD_RICCN rp||sdhD; Ortholog to ERGA_CDS_01850 Succinate dehydrogenase hydrophobic membrane anchor protein	COG2142 SdhD succinate dehydrogenase hydrophobic anchor subunit succinate dehyrdrogenase subunit D	Putative succinate dehydrogenase, hydrophobic membrane anchor protein	succinate dehydrogenase membrane anchor subunit	Similar to sp|Q92J98|DHSD_RICCN rp||sdhD; Ortholog to ERWE_CDS_01900 Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate dehydrogenase hydrophobic membrane anchor protein	succinate dehydrogenase, hydrophobic membrane anchor protein, putative	Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate dehydrogenase, cytochrome b subunit	putative succinate dehydrogenase membrane anchor subunit	succinate dehydrogenase, hydrophobic membrane anchor protein identified by similarity to GB:AAC17941.1	Succinate dehydrogenase membrane anchor subunit	succinate dehydrogenase membrane anchor subunit identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	putative succinate dehydrogenase, hydrophobic membrane anchor protein identified by similarity to SP:P10445	Succinate dehydrogenase, hydrophobic membrane anchor protein	Succinate dehydrogenase, hydrophobic anchor subunit	Succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase hydrophobic membrane anchor protein	Succinate dehydrogenase, cytochrome b subunit	Succinate dehydrogenase, hydrophobic membrane anchor protein	Succinate dehydrogenase hydrophobic membrane anchor protein	
RICPR00124	Succinate dehydrogenase flavoprotein subunit	Residues 5 to 592 of 592 are 99 pct identical to residues 1 to 588 of a 588 aa protein from Escherichia coli O157:H7 ref: NP_308775.1 succinate dehydrogenase flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	Succinate dehydrogenase/fumarate reductase, flavoprotein subunits	SdhA protein	Putative succinate dehydrogenase (Flavoprotein subunit) oxidoreductase	Succinate dehydrogenase flavoprotein subunit	succinate dehydrogenase flavoprotein subunit	conserved gene succinate dehydrogenase flavoprotein subunit A	succinate dehydrogenase flavoprotein subunit	identified by similarity to SP:P31038; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816 succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase, flavoprotein subunit	identified by match to protein family HMM PF00890; match to protein family HMM PF02910 succinate dehydrogenase, flavoprotein subunit	SdhA	Succinate dehydrogenase, flavoprotein subunit	PROBABLE SUCCINATE DEHYDROGENASE (FLAVOPROTEIN SUBUNIT) SDHA	Mb3347, sdhA, len: 590 aa. Equivalent to Rv3318, len: 590 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 590 aa overlap). Probable sdhA, flavoprotein of succinate dehydrogenase SdhA subunit (EC 1.3.99.1), equivalent to Q9CCM1|SDHA|ML0697 SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT from Mycobacterium leprae (584 aa), FASTA scores: opt: 3657, E(): 1.2e-217, (92.55% identity in 590 aa overlap). Also highly similar to others e.g. Q9KZ90|DHSA from Streptomyces coelicolor (584 aa), FASTA scores: opt: 2813, E(): 1.1e-165, (70.5% identity in 586 aa overlap); Q9RVS0|DR0952 from Deinococcus radiodurans (583 aa), FASTA scores: opt: 2203, E(): 4.1e-128, (57.35% identity in 593 aa overlap); P31038|DHSA_RICPR|SDHA|RP128 from Rickettsia prowazekii (596 aa), FASTA scores: opt: 1892, E(): 5.8e-109, (50.0% identity in 588 aa overlap); P10444|DHSA_ECOLI|SDHA|B0723|Z0877|ECS0748 from Escherichia coli strains K12 and O157:H7 (588 aa), FASTA scores: opt: 1844, E(): 5.2e-106, (48.75% identity in 591 aa overlap); etc. Contains PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. COFACTOR: FAD.  SIMILAR TO THE FLAVOPROTEIN SUBUNITS OF OTHER SPECIES SUCCINATE DEHYDROGENASE AND OF FUMARATE REDUCTASE. PART OF AN ENZYME COMPLEX CONTAINING FOUR SUBUNITS: A FLAVOPROTEIN, AN IRON-SULFUR, CYTOCHROME B-556, AND AN HYDROPHOBIC ANCHOR PROTEIN. PROBABLE SUCCINATE DEHYDROGENASE (FLAVOPROTEIN SUBUNIT) SDHA (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)	Succinate dehydrogenase flavoprotein subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinate dehydrogenase flavoprotein subunit	Succinate dehydrogenase, flavoprotein subunit	IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IPR003952: Fumarate reductase/succinate dehydrogenase, FAD-binding site succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit, SdhA	similar to Salmonella typhi CT18 succinate dehydrogenase flavoprotein subunit succinate dehydrogenase flavoprotein subunit	similar to BR1902, succinate dehydrogenase, flavoprotein subunit SdhA, succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	Succinate dehydrogenase, flavoprotein subunit	Succinate dehydrogenase flavoprotein subunit	Putative succinate dehydrogenase flavoprotein subunit	
RICPR00125	Putative glutamine transport system permease protein glnP	Amino acid ABC transporter permease protein	Amino acid ABC transporter permease protein	Amino acid ABC transporter permease protein	Amino acid ABC transporter permease protein	Amino acid ABC transporter permease protein	hypothetical protein	Succinate dehydrogenase flavoprotein subunit	Polar amino acid ABC transporter, inner membrane subunit	Probable amino-acid ABC transporter permease protein	Amino acid ABC transporter, permease protein	Polar amino acid ABC transporter, inner membrane subunit	Amino acid ABC transporter permease protein	
RICPR00126	30S ribosomal protein S12	30S ribosomal protein s12	30S ribosomal protein S12	Residues 21 to 144 of 144 are 100 pct identical to residues 1 to 124 of a 124 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289889.1 30S ribosomal subunit protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	SSU ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30s ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	conserved gene 30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981 ribosomal protein S12	30S ribosomal protein S12	SSU ribosomal protein S12P	30S ribosomal protein S12	identified by similarity to SP:P02367; match to protein family HMM PF00164; match to protein family HMM TIGR00981 ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	30S ribosomal protein S12	
RICPR00127	30S ribosomal protein S7	30S ribosomal protein s7	30S ribosomal protein S7	Residues 1 to 156 of 156 are 100 pct identical to residues 1 to 156 of a 179 aa protein from Escherichia coli K12 ref: NP_417800.1 30S ribosomal subunit protein S7, initiates assembly	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30s ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	conserved gene 30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	30S ribosomal protein S7	SSU ribosomal protein S7P	30S ribosomal protein S7	identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	30S ribosomal protein S7	identified by similarity to SP:P02359; match to protein family HMM PF00177; match to protein family HMM TIGR01029 ribosomal protein S7	
RICPR00128	Elongation factor G	Elongation factor g (EF-g)	Residues 1 to 624 of 624 are 99 pct identical to residues 1 to 624 of a 704 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289887.1 GTP-binding protein chain elongation factor EF-G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	Elongation factor G	GTP-binding protein chain elongation factor ef-g	Elongation factor G	translation elongation factor G	conserved gene translation elongation factor G (EF-G)	translation elongation factor G	Elongation factor G	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	EF-G Translation Elongation Factor G	elongation factor EF-G	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	translation elongation factor G, EF-G	Elongation factor G	Elongation factor G	Elongation factor G	identified by similarity to SP:P80868; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 translation elongation factor G	Elongation factor G	Translation elongation factor G	Elongation factor G	
RICPR00129	Preprotein translocase subunit secE	identified by similarity to SP:Q06799; match to protein family HMM PF00584; match to protein family HMM TIGR00964 preprotein translocase, SecE subunit	Preprotein translocase SecE subunit	Preprotein translocase SecE subunit	SecE protein	Preprotein translocase subunit	Preprotein translocase subunit SecE	Preprotein translocase SecE subunit	Preprotein translocase subunit SecE	Preprotein translocase subunit SecE	protein translocase subunit	Preprotein translocase subunit SecE	Preprotein translocase SecE subunit	Preprotein translocase, SecE subunit	Putative preprotein translocase subunit	Preprotein translocase subunit SecE	Preprotein translocase SecE subunit	
RICPR00130	Transcription antitermination protein nusG	Transcription antitermination protein	Transcription antitermination protein nusG	Residues 1 to 181 of 181 are 100 pct identical to residues 1 to 181 of a 181 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290613.1 component in transcription antitermination	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	Transcription antitermination protein nusG	transcription antitermination protein	Transcription antitermination protein nusG	Transcription antitermination protein nusG	transcription antitermination protein NusG	conserved gene transcription antitermination protein NusG	transcription antitermination protein NusG	Transcription antitermination protein nusG	identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription termination/antitermination factor NusG	Transcription antitermination factor	NusG Transcription antitermination protein	transcription antitermination protein NusG	identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription termination/antitermination factor NusG	Transcription antitermination protein nusG	transcription antitermination factor	Transcription antitermination protein nusG	Transcription antitermination protein nusG	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG	Transcription antitermination protein nusG	identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922 transcription antitermination protein NusG	Transcription antitermination protein nusG	
RICPR00131	50S ribosomal protein L11	50S ribosomal protein l11	50S ribosomal protein L11	Residues 1 to 142 of 142 are 99 pct identical to residues 1 to 142 of a 142 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290614.1 50S ribosomal subunit protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	LSU ribosomal protein L11P	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50s ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	conserved gene 50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 ribosomal protein L11	50S ribosomal protein L11	LSU ribosomal protein L11P	50S ribosomal protein L11	identified by similarity to SP:P29395; match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632 ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	50S ribosomal protein L11	
RICPR00132	50S ribosomal protein L1	50S ribosomal protein l1	50S ribosomal protein L1	Residues 4 to 226 of 226 are 100 pct identical to residues 12 to 234 of a 234 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290615.1 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	LSU ribosomal protein L1P	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50s ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	conserved gene 50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169 ribosomal protein L1	50S ribosomal protein L1	LSU ribosomal protein L1P	50S ribosomal protein L1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169 ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	50S ribosomal protein L1	
RICPR00133	50S ribosomal protein L10	50S ribosomal protein l10	50S ribosomal protein L10	Residues 1 to 165 of 165 are 100 pct identical to residues 1 to 165 of a 165 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290616.1 50S ribosomal subunit protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50s ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal subunit protein L10	conserved gene 50S ribosomal protein L10	50S ribosomal subunit protein L10	50S ribosomal protein L10	identified by match to protein family HMM PF00466 ribosomal protein L10	50S ribosomal protein L10	LSU ribosomal protein L10P	50S ribosomal protein L10	identified by match to protein family HMM PF00466 ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	50S ribosomal protein L10	identified by match to protein family HMM PF00466 ribosomal protein L10	
RICPR00134	50S ribosomal protein L7/L12	50S ribosomal protein l7 /l12	50S ribosomal protein L7/L12	Residues 1 to 121 of 121 are 100 pct identical to residues 1 to 121 of a 121 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290617.1 50S ribosomal subunit protein L7-L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50s ribosomal protein L7/l12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal subunit protein L7/L12	conserved gene 50S ribosomal protein L7/L12	50S ribosomal subunit protein L7/L12	50S ribosomal protein L7/L12	identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	50S ribosomal protein L7/L12	LSU ribosomal protein L12P (L7/L12)	50S ribosomal protein L12	identified by similarity to SP:P29396; match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	50S ribosomal protein L7/L12	identified by similarity to SP:P29396; match to protein family HMM PF00542; match to protein family HMM TIGR00855 ribosomal protein L7/L12	
RICPR00135	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase beta chain	Residues 12 to 1353 of 1353 are 100 pct identical to residues 1 to 1342 of a 1342 aa protein from Escherichia coli O157:H7 ref: NP_312937.1 RNA polymerase beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-dependent RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	RNA polymerase B-subunit	conserved gene DNA-directed RNA polymerase beta subunit	RNA polymerase B-subunit	DNA-directed RNA polymerase subunit beta	identified by similarity to EGAD:32012; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565 DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase beta chain	RNA polymerase beta subunit	identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013 DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase beta chain	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase subunit beta	identified by similarity to SP:P00575; match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR01612 DNA-directed RNA polymerase, beta subunit	DNA-directed RNA polymerase subunit beta	DNA-directed RNA polymerase	DNA-directed RNA polymerase subunit beta	
RICPR00136	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta prime chain	DNA-directed RNA polymerase subunit beta'	Residues 1 to 1407 of 1407 are 99 pct identical to residues 1 to 1407 of a 1407 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290619.1 RNA polymerase, beta prime subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta chain	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase subunit beta'	RNA polymerase beta' subunit	conserved gene DNA-directed RNA polymerase beta' subunit	RNA polymerase beta' subunit	DNA-directed RNA polymerase subunit beta'	identified by similarity to SP:P37871; match to protein family HMM PF00623; match to protein family HMM PF01854; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta' chain	identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase B prime subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase beta' chain	DNA-directed RNA polymerase subunit beta'	identified by similarity to SP:O83270; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR01369; match to protein family HMM TIGR01612 DNA-directed RNA polymerase, beta' subunit	DNA-directed RNA polymerase subunit beta'	DNA-directed RNA polymerase	
RICPR00137	Cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	PepB	Probable cytosol aminopeptidase	Probable cytosol aminopeptidase	identified by match to protein family HMM PF00883 cytosol aminopeptidase	leucine aminopeptidase	identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789 cytosol aminopeptidase	Leucyl aminopeptidase	LEUCYL AMINOPEPTIDASE	Probable cytosol aminopeptidase	identified by match to protein family HMM PF00883 cytosol aminopeptidase family protein	Leucine aminopeptidase protein	probable leucyl aminopeptidase; Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis and peptidolysis (GO:0006508) Peptidase M17, cytosol aminopeptidase, C-terminal	cytosol aminopeptidase	Probable cytosol aminopeptidase	Leucine aminopeptidase	Leucyl aminopeptidase	Similar to Rhizobium meliloti probable cytosol aminopeptidase PepA or r01155 or smc00585 SWALL:AMPA_RHIME (SWALL:Q92QY7) (497 aa) fasta scores: E(): 1.5e-50, 36.6% id in 489 aa and to Rickettsia conorii probable cytosol aminopeptidase PepA or rc0184 SWALL:AMPA_RICCN (SWALL:Q92J85) (500 aa) fasta scores: E(): 6.8e-50, 37.52% id in 453 aa probable aminopeptidase	Probable cytosol aminopeptidase	similar to BR0689, cytosol aminopeptidase family protein cytosol aminopeptidase family protein	probable cytosol aminopeptidase	Cytosol aminopeptidase	Aminopeptidase A	Ortholog of S. aureus MRSA252 (BX571856) SAR0904 cytosol aminopeptidase family protein	probable cytosol aminopeptidase	Cytosol aminopeptidase	
RICPR00138	Putative uncharacterized protein RP143	involved in chromosome partitioning; COG1192 ATPases	Chromosome partitioning protein	conserved hypothetical protein	ATPases involved in chromosome partitioning-like protein	ATPases involved in chromosome partitioning-like	Chromosome partitioning protein-like protein	ATPase	putative chromosome partitioning protein KEGG: sil:SPO0689 putative chromosome partitioning protein, ev=1e-124, 84% identity	chromosome partitioning protein ParA	Chromosome partitioning protein	putative chromosome partitioning protein ParA	Hypothetical protein	ATPase COG1192 ATPases involved in chromosome partitioning	ATPase involved in chromosome partitioning	chromosome partitioning protein KEGG: rsp:RSP_1042 chromosome partitioning protein	possible chromosome partitioning protein	conserved hypothetical protein KEGG: bja:bll5161 hypothetical protein	chromosome partitioning protein KEGG: rsp:RSP_1042 chromosome partitioning protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	ATPases involved in chromosome partitioning-like protein	Putative uncharacterized protein	Chromosome partitioning protein-like protein	ATPase involved in chromosome partitioning-like protein	Chromosome partitioning protein-like protein	Chromosome partitioning protein	ATPase MipZ	
RICPR00139	Uncharacterized protein RP144	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Leucyl aminopeptidase	Putative uncharacterized protein	
RICPR00140	Aspartyl-tRNA synthetase	AspS	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	identified by similarity to SP:P36419; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase protein	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	similar to BR0751, aspartyl-tRNA synthetase AspS, aspartyl-tRNA synthase	Aspartyl-tRNA synthetase	Similar to sp|Q92J82|SYD_RICCN sp|Q9ZE17|SYD_RICPR; Ortholog to ERGA_CDS_06890 Aspartyl-tRNA synthetase	COG0173 aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	asparaginyl-tRNA synthetase	Similar to sp|Q92J82|SYD_RICCN sp|Q9ZE17|SYD_RICPR; Ortholog to ERWE_CDS_06980 Aspartyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx; COG0173 aspartyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx; COG0173 aspartyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0173 aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase, class IIb:GAD domain:tRNA synthetase, class II (D, K and N):OB-fold nucleic acid binding domain:Asp...	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	Aspartyl-tRNA synthetase	aspartyl-tRNA synthetase	aspartyl-tRNA synthetase identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459	


RICPR00141	Uncharacterized protein RP146	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00142	Uncharacterized protein RP147	Residues 28 to 261 of 261 are 99 pct identical to residues 1 to 234 of a 234 aa protein from Escherichia coli K12 ref: NP_415307.1 orf, conserved hypothetical protein	Uncharacterized protein CT_819	Putative membrane protein	YccA protein	Similar to hypothetical integral membrane protein YbhL of Escherichia coli	Integral membrane protein	Integral membrane protein	identified by match to protein family HMM PF01027 membrane protein, putative	conserved hypothetical protein, membrane protein	Putative uncharacterized protein	Integral membrane protein interacts with FtsH	Uncharacterized protein yrjE	putative permease	Integral membrane protein, interacts with FtsH	similar to Salmonella typhimurium putative permease putative permease	Similar to Yersinia pestis putative membrane protein YPO1163 or Y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 3.4e-16, 33.63% id in 223 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YbhL or B0786 or C0868 SWALL:YBHL_ECOLI (SWALL:P75768) (234 aa) fasta scores: E(): 3.7e-14, 32.43% id in 222 aa putative membrane protein	Putative uncharacterized protein	similar to BR0088, membrane protein, hypothetical hypothetical membrane protein	Putative uncharacterized protein gbs1653	Putative uncharacterized protein	Hypothetical protein JHP0854	identified by match to PFAM protein family HMM PF01027 membrane protein, putative	Stationary phase anti-death Family (SAD), acetate uptake	Conserved hypothetical integral membrane protein	Uncharacterized membrane protein SPy_0358/M5005_Spy0301	best blastp match gb|AAK33404.1| (AE006499) conserved hypothetical protein (putative membrane spanning protein) [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by match to protein family HMM PF01027 membrane protein, putative	conserved family - putative integral membrane protein hypothetical protein	
RICPR00143	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Residues 1 to 273 of 273 are 99 pct identical to residues 1 to 273 of a 273 aa protein from Escherichia coli K12 ref: NP_414572.1 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	similar to dihydrodipicolinate reductase proteins hypothetical protein	conserved gene dihydropicolinate reductase	similar to dihydrodipicolinate reductase proteins hypothetical protein	Dihydrodipicolinate reductase	identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	dihydrodipicolinate reductase	identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase	identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036 dihydrodipicolinate reductase	Dihydrodipicolinate reductase	Dihydrodipicolinate reductase protein	Dihydrodipicolinate reductase	Mb2795c, dapB, len: 245 aa. Equivalent to Rv2773c, len: 245 aa, from Mycobacterium tuberculosis strain H37Rv, (99.2% identity in 245 aa overlap). dapB, dihydrodipicolinate reductase (EC 1.3.1.26) (see first citation below), highly similar to many e.g.  P40110|DAPB_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (248 aa), FASTA scores: opt: 1030, E(): 1.8e-58, (65.45% identity in 246 aa overlap); O86836|DAPB_STRCO|SC9A10.03 from Streptomyces coelicolor (250 aa), FASTA scores: opt: 997, E(): 2.3e-56, (61.15% identity in 247 aa overlap); P42976|DAPB_BACSU from Bacillus subtilis (267 aa), FASTA scores: opt: 608, E(): 1.7e-31, (45.95% identity in 209 aa overlap); P46829|DAPB_MYCBO from Mycobacterium bovis (see second citation below) (271 aa), FASTA scores: opt: 505, E(): 6.3e-25, (36.2% identity in 246 aa overlap); etc. BELONGS TO THE DIHYDRODIPICOLINATE REDUCTASE FAMILY. DIHYDRODIPICOLINATE REDUCTASE DAPB (DHPR)	InterProMatches:IPR000846; Molecular Function: dihydrodipicolinate reductase activity (GO:0008839), Biological Process: lysine biosynthesis via diaminopimelate (GO:0009089) dihydrodipicolinate reductase	
RICPR00144	Putative uncharacterized protein RP149	Putative uncharacterized protein TTHA0961	Similar to rc||RC0191 sp|P54990|NTAB_CHEHE rp||RP149 sp|Q02058|DIM6_STRCO sp|P54994|SNAC_STRPR; Ortholog to ERGA_CDS_05980 Conserved hypothetical protein. Possible flavoprotein oxygenase	also found in Archaeoglobus fulgidus conserved Crenarchaeal protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative electron transfer flavoprotein	conserved hypothetical protein similar to ZP_00142335.1 hypothetical protein	Similar to rc||RC0191 sp|P54990|NTAB_CHEHE rp||RP149 sp|Q02058|DIM6_STRCO sp|P54994|SNAC_STRPR; Ortholog to ERWE_CDS_06070 Conserved hypothetical protein. Possible flavoprotein oxygenase	identified by match to protein family HMM PF01613 flavin reductase domain protein	Flavin reductase-like, FMN-binding	putative reductase	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family unknown	flavin reductase-like, FMN-binding	Flavin reductase-like	conserved hypothetical protein	flavin reductase-like, FMN-binding	flavin reductase family protein identified by match to protein family HMM PF01613	probable oxygenase	oxidoreductase, putative identified by match to protein family HMM PF01613	Flavoprotein oxygenase DIM6/NTAB family protein	Flavin reductase-like, FMN-binding	flavin reductase family protein identified by match to protein family HMM PF01613	Flavin reductase domain protein, FMN-binding	putative flavin reductase identified by similarity to GB:BAB18470.1; match to protein family HMM PF01613	flavin reductase-like, FMN-binding	flavin reductase domain protein, FMN-binding PFAM: flavin reductase domain protein, FMN-binding KEGG: bur:Bcep18194_A5906 flavin reductase-like, FMN-binding	flavin reductase domain protein, FMN-binding PFAM: flavin reductase domain protein, FMN-binding KEGG: ttj:TTHB244 phenol hydroxylase component B	flavin reductase-like, FMN-binding	Actinorhodin polyketide dimerase	flavin reductase domain protein, FMN-binding PFAM: flavin reductase domain protein, FMN-binding KEGG: atc:AGR_L_3083 hypothetical protein	
RICPR00145	AMINO-ACID ABC TRANSPORTER BINDING PROTEIN	identified by match to protein family HMM PF00497 amino acid ABC transporter, periplasmic amino acid-binding protein	Amino acid ABC transporter substrate binding protein	extracellular solute-binding protein, family 3	Amino acid ABC transporter substrate binding protein	Amino acid ABC transporter substrate binding protein	amino acid ABC transporter, amino acid-binding protein	Amino acid ABC transporter substrate binding protein	Extracellular solute-binding protein family 3 precursor	Extracellular solute-binding protein, family 3 precursor	Amino acid ABC transporter substrate binding protein	Extracellular solute-binding protein family 3 precursor	Amino acid ABC transporter substrate binding protein	Amino acid ABC transporter substrate binding protein	YqiX	glutamine-binding protein	Dihydrodipicolinate reductase	Extracellular solute-binding protein family 3 precursor	Extracellular solute-binding protein family 3 precursor	Spore amino acid ABC superfamily ATP binding cassette transporter, binding protein	Extracellular solute-binding protein family 3 precursor	Extracellular solute-binding protein family 3 precursor	Amino acid ABC transporter substrate binding protein	Amino acid ABC transporter, amino acid-binding protein	Extracellular solute-binding protein family 3	Amino acid ABC transporter, amino acid-binding protein	Amino acid ABC transporter, amino acid-binding protein	Glutamine-binding protein	Amino acid ABC transporter substrate binding protein	
RICPR00146	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA amidotransferase subunit b	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	glutamyl-tRNA amidotransferase, subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA(Gln) amidotransferase (subunit B)	conserved gene glutamyl/tRNA (Gln) amidotransferase, B subunit	Glutamyl-tRNA(Gln) amidotransferase (subunit B)	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 glutamyl-tRNA(Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	pet112 glutamyl-tRNA(Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 glutamyl-tRNA(Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	glutamyl-tRNA Gln amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Glutamyl-tRNA amidotransferase subunit B protein	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	Mb3034c, gatB, len: 509 aa. Equivalent to Rv3009c, len: 509 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 509 aa overlap). Probable gatB, Glu- tRNA-Gln amidotransferase, subunit B (EC 6.3.5.-), equivalent to O33107|GATB_MYCLE|MLCB637_15 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Mycobacterium leprae (509 aa), FASTA scores: opt: 2973, E(): 2.9e-173, (88.4% identity in 509 aa overlap). Also highly similar to other Glu- tRNA-Gln amidotransferases e.g.  Q9Z578|GATB|SC8D9.13 from Streptomyces coelicolor (504 aa), FASTA scores: opt: 2264, E(): 3.6e-130, (66.0% identity in 495 aa overlap); P74215|GATB_SYNY3|SLL1435 from Synechocystis sp. strain PCC 6803 (519 aa), FASTA scores: opt: 1289, E(): 6.7e-71, (42.0% identity in 485 aa overlap); Q9X100|GATB_THEMA|TM1273 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Thermotoga maritima (482 aa), FASTA scores: opt: 1165, E(): 2.2e-63, (40.05% identity in 487 aa overlap); etc. For more information about function, see citation below. Similar to many members of the pet112 family. BELONGS TO THE GATB FAMILY. PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE (SUBUNIT B) GATB (Glu-ADT SUBUNIT B)	InterProMatches:IPR004413; formation of correctly charged Gln-tRNA(Gln) through transamidation of misacylated Glu-tRNA(Gln), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: glutamyl-tRNA(Gln) amidotransferase activity (GO:0017068) glutamyl-tRNA(Gln) amidotransferase (subunit B)	
RICPR00147	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA (gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	GatA	glutamyl-tRNA amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase (subunit A)	conserved gene glutamyl/tRNA (Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase (subunit A)	Glutamyl-tRNA(Gln) amidotransferase subunit A	identified by match to protein family HMM PF01425; match to protein family HMM TIGR00132 glutamyl-tRNA(Gln) amidotransferase, A subunit	Glutamyl-tRNA amidotransferase subunit A	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	glutamyl-tRNA(Gln) amidotransferase subunit A	identified by similarity to SP:O06491; match to protein family HMM PF01425; match to protein family HMM TIGR00132 glutamyl-tRNA(Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase subunit A	glutamyl-tRNA Gln amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA (Gln) amidotransferase subunit A	Glutamyl-tRNA(Gln) amidotransferase subunit A	identified by similarity to SP:O06491; match to protein family HMM PF01425; match to protein family HMM TIGR00132 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit	Glutamyl-tRNA(Gln) amidotransferase subunit A	Glutamyl-tRNA amidotransferase subunit A protein	Glutamyl-tRNA(Gln) amidotransferase subunit A	Mb3036c, gatA, len: 494 aa. Equivalent to Rv3011c, len: 494 aa, from Mycobacterium tuberculosis strain H37Rv, (99.4% identity in 494 aa overlap). Probable gatA, Glu-tRNA-Gln amidotransferase, subunit A (EC 6.3.5.-), equivalent to O33105|GATA|ML1702|MLCB637.13 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Mycobacterium leprae (497 aa), FASTA scores: opt: 2839, E(): 3.5e-161, (88.8% identity in 492 aa overlap). Also highly similar to other Glu-tRNA-Gln amidotransferases e.g.  Q9Z580|GATA_STRCO from Streptomyces coelicolor (497 aa), FASTA scores: opt: 2231, E(): 4.5e-125, (70.3% identity in 486 aa overlap); P73558|GATA_SYNY3|SLR0877 from Synechocystis sp. strain PCC 6803 (483 aa), FASTA scores: opt: 1593, E(): 3.3e-87, (55.85% identity in 487 aa overlap); O06491|GATA_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE from Bacillus subtilis (485 aa), FASTA scores: opt: 1389, E(): 4.3e-75, (51.7% identity in 468 aa overlap); etc. For more information about function, see citation below. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE AMIDASE FAMILY. PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE (SUBUNIT A) GATA (Glu-ADT SUBUNIT A)	InterProMatches:IPR004412; formation of correctly charged Gln-tRNA(Gln) through transamidation of misacylated Glu-tRNA(Gln), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: glutamyl-tRNA(Gln) amidotransferase activity (GO:0017068) glutamyl-tRNA(Gln) amidotransferase (subunit A)	
RICPR00148	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135 glutamyl-tRNA(Gln) amidotransferase, C subunit	glutamyl-tRNA Gln amidotransferase subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	similar to BRA0595, glutamyl-tRNA(Gln) amidotransferase, C subunit GatC, glutamyl-tRNA(Gln) amidotransferase, C subunit	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	identified by match to PFAM protein family HMM PF02686 glutamyl-tRNA(Gln) amidotransferase, C subunit	Glutamyl-tRNA(Gln) amidotransferase subunit C	best blastp match gb|AAK34511.1| (AE006604) putative Glu-tRNA Gln amidotransferase subunit C [Streptococcus pyogenes M1 GAS] putative Glu-tRNA Gln amidotransferase subunit C	Glutamyl tRNA-Gln amidotransferase, subunit C	glutamyl-tRNA Gln amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glu-tRNAGln amidotransferase C subunit	Glutamyl-tRNA(Gln) amidotransferase subunit C	identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135 glutamyl-tRNA(Gln) amidotransferase, C subunit	glutamyl-tRNA(Gln) amidotransferase subunit C	glutamyl-tRNA(Gln) amidotransferase C subunit	Glutamyl-tRNA(Gln) amidotransferase C subunit	Glu-tRNAGln amidotransferase, C subunit:Glutamyl-tRNA(Gln) amidotransferase C subunit	Glutamyl-tRNA amidotransferase, subunit C	ATP + L-GLUTAMYL-TRNA(GLN) + L-GLUTAMINE = ADP + PHOSPHATE + L-GLUTAMINYL-TRNA(GLN) + L-GLUTAMATE.  HETEROTRIMER OF A, B AND C SUBUNITS (BY SIMILARITY).  Citation: PNAS, 1997, 94(22):11819-11826 Glu-tRNA (Gln) amidotransferase, subunit C	glutamyl-tRNA(Gln) amidotransferase, C subunit	glutamyl-tRNA(Gln) amidotransferase, C subunit	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	Glutamyl-tRNA(Gln) amidotransferase subunit C	glutamyl-tRNA(Gln) amidotransferase, C subunit TIGRFAMsMatches:TIGR00135	
RICPR00149	Ribosome-recycling factor	Ribosome recycling factor	Ribosome-recycling factor	Residues 1 to 185 of 185 are 99 pct identical to residues 1 to 185 of a 185 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285866.1 ribosome releasing factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	ribosome releasing factor	Ribosome-recycling factor	Ribosome-recycling factor	Ribosome recycling factor	conserved gene ribosome recycling factor	Ribosome recycling factor	Ribosome-recycling factor	identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	Ribosome-recycling factor	RRF Ribosome Recycling Factor	ribosome recycling factor	identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	Ribosome-recycling factor	ribosome recycling factor	Ribosome-recycling factor	Ribosome recycling factor	Ribosome recycling factor	Ribosome-recycling factor	identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496 ribosome recycling factor	
RICPR00150	Uridylate kinase	Uridylate kinase	Uridylate kinase	Residues 1 to 241 of 241 are 100 pct identical to residues 1 to 241 of a 241 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285865.1 uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	PyrH	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase (UK) (Uridine monophosphate kinase)	conserved gene uridylate kinase	Uridylate kinase (UK) (Uridine monophosphate kinase)	Uridylate kinase	identified by similarity to EGAD:108466; match to protein family HMM PF00696 uridylate kinase	Uridylate kinase	Uridylate kinase	uridylate kinase	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075 uridylate kinase	Uridylate kinase	uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	Uridylate kinase	identified by similarity to SP:O31749; match to protein family HMM PF00696; match to protein family HMM TIGR02075 uridylate kinase	
RICPR00151	Putative uncharacterized protein RP156	Multisubunit Na+/H+ antiporter, MnhE subunit	Putative monovalent cation/H+ antiporter subunit E	Multisubunit Na+/H+ antiporter, MnhE subunit	Putative monovalent cation/H+ antiporter subunit E	Putative monovalent cation/H+ antiporter subunit E	sodium/proton antiporter protein	Putative uncharacterized protein	Putative monovalent cation/H+ antiporter subunit E	
RICPR00152	MULTIDRUG RESISTANCE PROTEIN B	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 drug resistance transporter, Bcr/CflA family	MFS type drug exporter Multidrug resistance protein B	MFS-type multidrug resistance protein B split gene	Putative multidrug efflux system protein	Multidrug resistance protein B	MFS-type multidrug resistance protein B	MFS-type multidrug resistance protein B	Multidrug resistance protein B	drug resistance transporter, EmrB/QacA subfamily GO_component: integral to plasma membrane [GO ID 0005887]; GO_function: drug:hydrogen antiporter activity [GO ID 0015307]; GO_process: multidrug transport [GO ID 0006855]	multidrug resistance protein B	Multidrug resistance protein B	Drug resistance transporter, EmrB/QacA subfamily	Drug resistance transporter, EmrB/QacA subfamily	Drug resistance transporter, EmrB/QacA subfamily	Drug resistance transporter, EmrB/QacA subfamily	Probable multidrug efflux transporter, permease protein	Drug resistance transporter EmrB/QacA subfamily	drug resistance transporter, EmrB/QacA subfamily TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mex:Mext_4101 EmrB/QacA family drug resistance transporter	Drug resistance transporter, EmrB/QacA subfamily	Drug resistance transporter, EmrB/QacA subfamily	Multidrug resistance protein B	Multidrug resistance protein B	MFS-type multidrug resistance protein B	Drug resistance transporter, EmrB/QacA subfamily	multidrug efflux system protein Evidence 2b : Function of strongly homologous gene; Product type t : transporter	MFS permease	Multidrug efflux system protein	
RICPR00153	Uncharacterized protein RP158	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00154	OUTER MEMBRANE PROTEIN OMP1	Residues 1 to 810 of 810 are 100 pct identical to residues 1 to 810 of a 810 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285871.1 orf, conserved hypothetical protein	Omp85 Analog	Outer membrane protein assembly factor yaeT	Bacterial surface antigen	YaeT protein	Putative outer membrane signal peptide protein	Outer membrane protein assembly factor yaeT	similar to protective surface antigen hypothetical protein	conserved gene outer membrane protein	similar to protective surface antigen hypothetical protein	identified by match to protein family HMM PF01103; match to protein family HMM PF07244 outer membrane protein, OMP85 family	Probable outer membrane protein	Outer membrane antigen	identified by similarity to OMNI:NTL01HP00596; match to protein family HMM PF01103 outer membrane protein, OMP85 family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark outer membrane antigen	putative outer membrane antigen	Outer membrane protein/protective antigen OMA87	similar to Salmonella typhi CT18 outer membrane protein precursor outer membrane protein precursor	Similar to Haemophilus influenzae protective surface antigen d15 precursor SWALL:D153_HAEIN (SWALL:O32629) (793 aa) fasta scores: E(): 5.6e-13, 23.23% id in 835 aa and to Xylella fastidiosa outer membrane antigen xf1046 SWALL:Q9PEI2 (EMBL:AE003941) (784 aa) fasta scores: E(): 5.8e-26, 23.37% id in 830 aa putative exported protein	Conserved hypothetical outer membrane protein	similar to BR1154, bacterial surface antigen bacterial surface antigen	Outer membrane antigen	Putative Outer membrane protein	Outer membrane protein assembly factor yaeT	Outer membrane protein OMP85	Similar to rp||omp1; Ortholog to ERGA_CDS_08660 Outer membrane protein omp1	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pm : putative membrane component putative outer membrane protein	COG4775 - outer membrane protein/protective antigen OMA87 similar to NP_359839.1 outer membrane protein	
RICPR00155	Putative zinc metalloprotease RP161	Membrane-associated zinc metalloprotease	Residues 16 to 465 of 465 are 99 pct identical to residues 1 to 450 of a 450 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285870.1 orf, conserved hypothetical protein	Protease rseP	Membrane-associated Zn-dependent proteases 1	Putative zinc metalloprotease SAV1262	YaeL protein	Putative zinc metalloprotease RSc1411	Protease EcfE	similar to putative membrane-associated Zn-dependent protease EcfE hypothetical protein	conserved gene membrane associated zinc metalloprotease	similar to putative membrane-associated Zn-dependent protease EcfE hypothetical protein	Zinc-dependent protease, membrane associated	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 membrane-associated zinc metalloprotease, putative	Pheromone-processing membrane metalloprotease	hypothetical protein	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 membrane-associated zinc metalloprotease, putative	Putative uncharacterized protein	conserved hypothetical protein, putative processing of a peptide sex pheromone	Putative zinc metalloprotease XF_1047	Hypothetical protein SE0938	Predicted membrane-associated Zn-dependent protease	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 membrane-associated zinc metalloprotease, putative	Putative uncharacterized protein	Zinc metallopeptidase protein	Putative zinc metalloprotease Rv2869c/MT2937	Mb2894c, -, len: 404 aa. Equivalent to Rv2869c, len: 404 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 404 aa overlap). Probable conserved transmembrane protein, equivalent to Q9CBU4|ML1582 PROBABLE INTEGRAL MEMBRANE PROTEIN from Mycobacterium leprae (404 aa), FASTA scores: opt: 2250, E(): 1.1e-128, (82.2% identity in 404 aa overlap). Also weakly similar to other membrane proteins or hypothetical proteins e.g.  Q9A710|CC1916 PUTATIVE MEMBRANE-ASSOCIATED ZINC METALLOPROTEASE from Caulobacter crescentus (398 aa), FASTA scores: opt: 368, E(): 7.8e-15, (28.1% identity in 427 aa overlap). PROBABLE CONSERVED TRANSMEMBRANE PROTEIN	Peptidase M50, putative membrane-associated zinc metallopeptidase	Zn-dependent protease	
RICPR00156	N utilization substance protein B homolog	Transcription antitermination factor NusB	similar to BR0770, N utilization substance protein B NusB, N utilization substance protein B	N utilization substance protein B homolog	identified by similarity to SP:P04381; match to protein family HMM PF01029; match to protein family HMM TIGR01951 transcription termination/antitermination factor NusB	N utilization substance protein B	NusB antitermination factor	hypothetical protein	Antitermination protein NusB	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3019094, 1406588; Product type f : factor transcription termination factor	NusB antitermination factor	N utilization substance protein B	putative N utilization substance protein B similarity:fasta; with=UniProt:NUSB_ECOLI (EMBL:A85538); Shigella flexneri.; nusB; N utilization substance protein B (NusB protein).; length=139; id 30.667; 150 aa overlap; query 10-159; subject 1-139 similarity:fasta; with=UniProt:NUSB_RHIME (EMBL:SME591786); Rhizobium meliloti (Sinorhizobium meliloti).; nusB; N utilization substance protein B homolog (NusB protein).; length=160; id 80.625; 160 aa overlap; query 1-160; subject 1-160	NusB antitermination factor	transcription antitermination protein B similar to nusB (SMc01778) [Sinorhizobium meliloti] Similar to entrez-protein:Q92QT9 Putative location:bacterial cytoplasm Psort-Score: 0.1566; go_function: RNA binding [goid 0003723]; go_process: regulation of transcription, DNA-dependent [goid 0006355]; go_process: transcription termination [goid 0006353]	NusB antitermination factor	NusB antitermination factor	putative N utilization substance protein B identified by similarity to GB:AAS13983.1	transcription antitermination factor NusB	NusB antitermination factor TIGRFAM: transcription antitermination factor NusB PFAM: NusB/RsmB/TIM44 KEGG: rpb:RPB_2639 NusB antitermination factor	Transcription antitermination factor NusB	Antitermination factor	Antitermination factor	N utilization substance protein B	Transcription antitermination factor NusB	NusB antitermination factor	NusB antitermination factor	N utilization substance protein B homolog	N utilization substance protein B	
RICPR00157	Ribosomal RNA large subunit methyltransferase E	Residues 1 to 209 of 209 are 100 pct identical to residues 1 to 209 of a 209 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289753.1 cell division protein	Ribosomal RNA large subunit methyltransferase J	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase (Cell division protein FtsJ)	conserved gene ribosomal RNA large subunit methyltransferase J	Ribosomal RNA large subunit methyltransferase (Cell division protein FtsJ)	identified by match to protein family HMM PF01728 ribosomal RNA large subunit methyltransferase J	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase E	Cell division protein	Ribosomal RNA large subunit methyltransferase E	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cell division protein	IPR002877: Ribosomal RNA methyltransferase RrmJ/FtsJ; IPR004512: Ribosomal RNA large subunit methyltransferase J Ribosomal RNA large subunit methyltransferase J	23S rRNA methylase	similar to Salmonella typhi CT18 cell division protein cell division protein	similar to BRA0686, ribosomal RNA large subunit methyltransferase J, hypothetical hypothetical ribosomal RNA large subunit methyltransferase J	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase E	Ribosomal RNA large subunit methyltransferase J	Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA	Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme cell division protein (filamentous temperature sensitivity, 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)	COG0293 FtsJ methyltransferase involved in cell division similar to NP_108462.1 cell division protein	Ribosomal RNA large subunit methyltransferase E	cell division protein FtsJ; COG0293 23S rRNA methylase	

RICPR00159	Uncharacterized protein RP165	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00160	UPF0083 protein RP166	Residues 1 to 158 of 158 are 100 pct identical to residues 1 to 158 of a 158 aa protein from Escherichia coli K12 ref: NP_417109.1 orf, conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	B2619 protein	Putative oligoketide cyclase/lipid transport protein	Similar to unknown protein YfjG of Escherichia coli	similar to conserved hypothetical proteins hypothetical protein	conserved gene oligoketide cyclase/lipid transporter protein	similar to conserved hypothetical proteins hypothetical protein	identified by match to protein family HMM PF03654 aromatic-rich family protein	Putative uncharacterized protein	Putative uncharacterized protein	IPR004827: Basic-leucine zipper (bZIP) transcription factor; IPR005340: Protein of unknown function UPF0083 putative Oligoketide cyclase/lipid transport protein	Oligoketide cyclase/lipid transport protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR1123, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	Similar to sp|Q9ZDZ7|Y166_RICPR rc||RC0208; Ortholog to ERGA_CDS_05660 Conserved hypothetical protein	conserved family - putative oligoketide hypothetical protein	Putative uncharacterized protein	lipid transport protein; COG2867 oligoketide cyclase	conserved hypothetical protein	Putative uncharacterized protein	Similar to Q8ZH13 Hypothetical protein YPO1102 from Yersinia pestis (144 aa). FASTA: opt: 463 Z-score: 623.4 E(): 7.9e-27 Smith-Waterman score: 463; 43.662 39dentity in 142 aa overlap. ORF ftt1185c conserved hypothetical protein	Oligoketide cyclase/lipid transport protein, putative	Putative oligoketide cyclase/lipid transport protein	
RICPR00162	Ribosomal RNA small subunit methyltransferase E	Residues 1 to 252 of 252 are 99 pct identical to residues 1 to 252 of a 252 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289518.1 orf, conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Similar to unknown protein YggJ of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein TTHA0657	IPR001993: Mitochondrial substrate carrier; IPR004382: Conserved hypothetical protein 46; IPR006700: Protein of unknown function DUF558 putative cytoplasmic protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BRA0762, conserved hypothetical protein TIGR00046 conserved hypothetical protein TIGR00046	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	Similar to rc||RC0210 rp||RP168; Ortholog to ERGA_CDS_05020 Conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	conserved hypothetical protein similar to ZP_00210814.1 hypothetical protein	Putative uncharacterized protein	COG1385 conserved hypothetical protein	conserved hypothetical protein	Similar to: HI0303, YGGJ_HAEIN conserved hypothetical RNA methyltransferase	Uncharacterized BCR Hypothetical protein	
RICPR00163	Uncharacterized protein RP169	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00164	ACRIFLAVIN RESISTANCE PROTEIN D	Cation/multidrug efflux pump protein	Hydrophobe/amphiphile efflux-1 HAE1 family protein	Hydrophobe/amphiphile efflux-1 (HAE1) family protein	AcrB/AcrD/AcrF family protein	AcrB/AcrD/AcrF family protein	acriflavin resistance protein	Acriflavin resistance protein precursor	Acriflavin resistance protein	RND efflux transporter, permease protein AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer, TREMBL:Q9HW27 (38% identity); SWISSPROT:Q57124 (33% identity). InterPro (IPR001036): Acriflavin resistance protein. Pfam (PF00873): AcrB/AcrD/AcrF family. TIGRFAM (TIGR00915): Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein.  TIGRFAM (TIGR00914): Heavy metal efflux pump, CzcA family.  TMHMM predicting 12 transmembrane helices. TC (2.A.6.2): The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Specificity unclear	Acriflavin resistance protein	Acriflavin resistance protein D	Hydrophobe/amphiphile efflux-1 (HAE1) family protein	KEGG: slo:Shew_1852 acriflavin resistance protein acriflavin resistance protein	Hydrophobe/amphiphile efflux-1 (HAE1) family protein	Acriflavin resistance protein	acriflavin resistance plasma membrane protein	Hydrophobe/amphiphile efflux-1 HAE1 family protein	Acriflavin resistance protein	Acriflavin resistance plasma membrane protein	Truncated acriflavin resistance protein	
RICPR00165	DNA-binding protein HU	DNA-binding protein	DNA-binding protein HU-beta	Bacterial histone-like DNA-binding protein	DNA-binding protein HU	similar to DNA-binding protein HU-beta hypothetical protein	conserved gene HupB DNA binding protein HU-beta	similar to DNA-binding protein HU-beta hypothetical protein	DNA-binding protein II	identified by similarity to EGAD:8587; match to protein family HMM PF00216 DNA-binding protein HU	DNA-binding protein HU	DNA binding protein HU	DNA-binding protein hu-beta	histone-like DNA-binding protein	DNA-binding protein HU	DNA-binding protein II	DNA-binding protein HU	identified by similarity to SP:P02346; match to protein family HMM PF00216 DNA-binding protein HU	InterProMatches:IPR000119; involved in DNA repair, homologous recombination, and presecretory protein translocation,Molecular Function: DNA binding (GO:0003677) non-specific DNA-binding protein HBsu signal recognition particle-like (SRP) component	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark histone-like protein	DNA-binding protein II HB	DNA-binding protein HU	DNA-binding protein HU	IPR000119: Histone-like bacterial DNA-binding protein DNA-binding protein HU-beta, NS1 (HU-1)	similar to Salmonella typhi CT18 DNA-binding protein HU-beta DNA-binding protein HU-beta	Histone-like DNA-binding protein HU	similar to BR1105, DNA-binding protein HU DNA-binding protein HU	HU like DNA-binding protein	Histone-like protein	
RICPR00166	DNA POLYMERASE III, DELTA SUBUNIT	DNA polymerase III delta subunit	DNA polymerase III subunit delta'	DNA polymerase III delta subunit	DNA polymerase III subunit delta'	DNA polymerase III subunit delta'	DNA polymerase III, delta' subunit	DNA polymerase III subunit delta	Putative DNA polymerase III delta subunit	DNA polymerase III subunit delta'	
RICPR00167	Signal recognition particle protein	Signal recognition particle protein	Residues 1 to 453 of 453 are 99 pct identical to residues 1 to 453 of a 453 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289163.1 GTP-binding export factor binds to signal sequence, GTP and RNA	Signal Recognition Particle GTPase	Signal recognition particle protein	Signal recognition particle GTPase ffh protein	signal recognition particle, SRP54 subunit	Signal recognition particle homolog	Ffh protein	Ffh	signal recognition particle protein	Probable gtp-binding signal recognition particle srp54, g-domain protein	Signal recognition particle protein	similar to signal recognition particle protein Ffh hypothetical protein	conserved gene signal recognition particle protein Ffh	similar to signal recognition particle protein Ffh hypothetical protein	Signal recognition particle protein Ffh	identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	Signal recognition particle	SRP54 signal recognition particle subunit FFH	signal recognition particle receptor	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	Signal recognition particle protein	signal recognition particle	Signal recognition particle protein	Ffh protein	Signal recognition particle M54 protein	Signal recognition particle GTPase	identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 signal recognition particle protein	
RICPR00168	Uncharacterized peptidase RP174	Putative uncharacterized protein	Peptidase protein	PROBABLE PEPTIDASE	Mb0466c, -, len: 676 aa. Equivalent to Rv0457c, len: 673 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 673 aa overlap). Probable peptidase (EC 3.4.-.-), similar to many e.g.  NP_102851.1|14022026|BAB48637.1 probable endopeptidase from Mesorhizobium loti (687 aa); Y4NA_RHISN|P55577 probable peptidase (EC 3.4.21.-) (726 aa), FASTA scores: opt: 1126, E(): 0, (40.9% identity in 491 aa overlap).  Also similar to Mycobacterium tuberculosis protein MTCY369.26 FASTA score: (33.8% identity in 299 aa overlap). REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a possible RBS upstream leads to an earlier start resulting in a slightly longer product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (676 aa versus 673 aa). PROBABLE PEPTIDASE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark prolyl oligopeptidase	Prolyl oligopeptidase	Putative prolyl endopeptidase	COG1505 prolyl oligopeptidase family protein	prolyl oligopeptidase	Prolyl endopeptidase precursor	Best Blastp Hit: emb|CAB83870.1| (AL162753) putative prolyl endopeptidase [Neisseria meningitidis] COG1505 Serine proteases of the peptidase family putative prolyl endopeptidase	putative prolyl endopeptidase	peptidase S9, prolyl oligopeptidase active site region	Peptidase S9, prolyl oligopeptidase active site region	putative prolyl endopeptidase similarity:fasta; with=UniProt:PPCE_AERHY (EMBL:AHPROEN); Aeromonas hydrophila.; Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE).; length=689; id 30.085; 708 aa overlap; query 5-674; subject 32-675 similarity:fasta; with=UniProt:Y4NA_RHISN (EMBL:RSAE86); Rhizobium sp. (strain NGR234).; Probable peptidase y4nA (EC 3.4.21.-).; length=726; id 32.900; 693 aa overlap; query 6-680; subject 53-723	Peptidase S9, prolyl oligopeptidase active site region	putative prolyl oligopeptidase precursor	prolyl oligopeptidase family protein identified by match to protein family HMM PF00326; match to protein family HMM PF02897	putative peptidase protein Putative location:bacterial inner membrane Psort-Score: 0.1192 similar to Mb0466c [Mycobacterium bovis subsp. bovis AF2122/97] and mll1209 [Mesorhizobium loti] Similar to swissprot:Q7U1Y4; go_function: hydrolase activity [goid 0016787]; go_function: catalytic activity [goid 0003824]; go_function: serine-type endopeptidase activity [goid 0004252]; go_function: serine-type peptidase activity [goid 0008236]; go_function: prolyl oligopeptidase activity [goid 0004287]; go_process: proteolysis and peptidolysis [goid 0006508]	Prolyl oligopeptidase precursor	Prolyl oligopeptidase precursor	Prolyl oligopeptidase precursor	prolyl oligopeptidase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Prolyl oligopeptidase	Prolyl oligopeptidase precursor	Prolyl oligopeptidase	prolyl oligopeptidase family protein COG1505 Serine proteases of the peptidase family S9A	peptidase S9, prolyl oligopeptidase active site domain protein PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller KEGG: bur:Bcep18194_A5455 peptidase S9, prolyl oligopeptidase active site region	
RICPR00169	PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE	Oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase	Residues 1 to 378 of 378 are 99 pct identical to residues 1 to 378 of a 378 aa protein from Escherichia coli K12 ref: NP_417430.1 putative oxidase	Coproporphyrinogen III Oxidase	Putative oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase and related FeS oxidoreductases	Oxygen-independent coproporphyrinogen oxidase III	YggW protein	HemN	Putative cog0635, coproporphyrinogen III oxidase and related fe-s oxidoreductases oxidoreductase protein	Similar to oxygen-independent coproporphyrinogen III oxidase	Similar to oxygen-independent coproporphyrinogen III oxidase hypothetical protein	conserved gene (oxygen-independent) coproporphyrinogen III oxidase	Similar to oxygen-independent coproporphyrinogen III oxidase hypothetical protein	identified by similarity to SP:P54304; match to protein family HMM PF02473; match to protein family HMM PF04055; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	Oxygen-independent coproporphyrinogen III oxidase	Coproporphyrinogen oxidase, anaerobic	oxygen independent coprophorphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	Probable porphyrin oxidoreductase	coproporphyrinogen III oxidase	Putative uncharacterized protein	Oxygen-independent coproporphyrinogen oxidase III	Oxygen independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00539 oxygen-independent coproporphyrinogen III oxidase, putative	HemN	Coproporphyrinogen III oxidase protein	Probable oxygen-independent coproporphyrinogen- III oxidase	
RICPR00170	PROTON/SODIUM-GLUTAMATE SYMPORT PROTEIN	Similar to Chlamydia pneumoniae glutamate symport GltT or cpn0528 or cp0224 SWALL:Q9Z824 (EMBL:AE001637) (414 aa) fasta scores: E(): 3.2e-130, 83.01% id in 418 aa, and to Bacillus caldotenax proton/sodium-glutamate symport protein GltT SWALL:GLTT_BACCA (SWALL:P24944) (421 aa) fasta scores: E(): 4.9e-45, 34.8% id in 408 aa putative symport protein	Na+/H+-dicarboxylate symporters	solute carrier family 1 (neutral amino acid transporter), member 5 [Source:HGNC Symbol;Acc:10943]	Na+/H+-dicarboxylate symporters	glutamate symporter sodium:dicarboxylate symporter family	Na+/H+-dicarboxylate symporters-like protein	proton/sodium-glutamate symport protein	proton/glutamate symporter COG1301 Na+/H+-dicarboxylate symporters	sodium:dicarboxylate symporter family protein identified by match to protein family HMM PF00375	transcript_id=ENSEEUT00000002666	Na+/H+-dicarboxylate symporters	transcript_id=ENSOGAT00000016245	proton/glutamate symporter identified by match to protein family HMM PF00375	proton/sodium-glutamate symport protein	Proton/glutamate symporter	Proton-glutamate symporter	sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter KEGG: she:Shewmr4_1582 sodium:dicarboxylate symporter	C4-dicarboxylate transport protein	Putative proton/glutamate symporter	Sodium:dicarboxylate symporter precursor	Sodium:dicarboxylate symporter	Proton/sodium-glutamate symport protein	Na+/H+-dicarboxylate symporter	KEGG: slo:Shew_0743 sodium:dicarboxylate symporter sodium:dicarboxylate symporter	transcript_id=ENSOPRT00000010887	Na+/H+-dicarboxylate symporters	Proton/sodium-glutamate symport protein	proton/sodium-glutamate symport protein	
RICPR00171	Putative uncharacterized protein RP177	CutA1 divalent ion tolerance protein	periplasmic divalent cation tolerance protein	Probable periplasmic divalent cation tolerance protein	Periplasmic divalent cation tolerance protein	Uncharacterized protein	Periplasmic divalent cation tolerance protein CutA	Divalent-cation tolerance protein cutA	Similar to Shewanella oneidensis periplasmic divalent cation tolerance protein CutA or SO0697 SWALL:Q8EIY0 (EMBL:AE015515) (107 aa) fasta scores: E(): 7.5e-12, 36.44% id in 107 aa, and to Nitrosomonas europaea CutA1 divalent ion tolerance protein CutA or NE2388 SWALL:Q82SF1 (EMBL:BX321864) (112 aa) fasta scores: E(): 4.6e-11, 37% id in 100 aa putative divalent cation tolerance protein	Periplasmic divalent cation tolerance protein	Similar to rc||cutA sp|P36654|CUTA_ECOLI; Ortholog to ERGA_CDS_03380 Periplasmic divalent cation tolerance protein	periplasmic divalent cation tolerance protein	Putative periplasmic divalent cation tolerance protein	Uncharacterized protein involved in tolerance to divalent cations	divalent cation tolerance protein	periplasmic divalent cation tolerance protein	identified by similarity to SP:P36654; match to protein family HMM PF03091 periplasmic divalent cation tolerance protein CutA	Periplasmic divalent cation tolerance protein	divalent cation tolerance protein, putative	Similar to rc||cutA sp|P36654|CUTA_ECOLI; Ortholog to ERWE_CDS_03420 Periplasmic divalent cation tolerance protein	ortholog to Escherichia coli bnum: b4137; MultiFun: Cell processes 5.5.6; Metabolism 1.6.15.1 periplasmic divalent cation tolerance protein	identified by similarity to SP:P36654; match to protein family HMM PF03091 divalent cation tolerance protein CutA	CutA1 divalent ion tolerance protein	CutA1 divalent ion tolerance protein	Periplasmic divalent cation tolerance protein	Putative uncharacterized protein	CutA1 divalent ion tolerance protein	divalent cation tolerance protein	CutA1 divalent ion tolerance protein	
RICPR00172	6-carboxy-5,6,7,8-tetrahydropterin synthase	Probable 6-pyruvoyl tetrahydrobiopterin synthase protein	Similarities with 6-pyruvoyl tetrahydrobiopterin synthase	6-pyruvoyl tetrahydrobiopterin synthase, putative	Putative 6-pyruvoyl tetrahydropterin synthase	Similar to: HI1190, YB90_HAEIN predicted 6-pyruvoyl-tetrahydropterin synthase	6-pyruvoyl-tetrahydropterin synthase Hypothetical protein	6-pyruvoyl tetrahydrobiopterin synthase, putative	similar to queD gene product; probably involved in queuosine biosynthesis	conserved possible 6-pyruvoyl tetrahydrobiopterin synthase	putative 6-pyruvoyl tetrahydrobiopterin synthase protein	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl tetrahydropterin synthase	identified by match to protein family HMM PF01242 putative 6-pyruvoyl tetrahydrobiopterin synthase	conserved hypothetical protein start codon not provided	6-pyruvoyl tetrahydrobiopterin synthase	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	Putative 6-pyruvoyl tetrahydropterin synthase	Putative uncharacterized protein	conserved hypothetical protein	6-pyruvoyl tetrahydropterin synthase identified by match to protein family HMM PF01242	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl tetrahydrobiopterin synthase	6-pyruvoyl tetrahydropterin synthase	6-pyruvoyl tetrahydropterin synthase and hypothetical protein PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein KEGG: bur:Bcep18194_A6468 6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl tetrahydropterin synthase and hypothetical protein	6-pyruvoyl-tetrahydropterin synthase	
RICPR00173	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	Residues 1 to 405 of 405 are 99 pct identical to residues 1 to 405 of a 405 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286443.1 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component)	Dihydrolipoamide Succinyltransferase	Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	SucB protein	Probable dihydrolipoamide succinyltransferase (Component of 2-oxoglutarate dehydrogenase complex) protein	Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex	identified by similarity to EGAD:12827; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 2-oxoglutarate dehydrogenase, E2 component, dihydroipoamide succinyltransferase	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	Dihydrolipoamide S-succinyltransferase	Dihydrolipoamide succinyltransferase	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	InterProMatches:IPR006255; Molecular Function: dihydrolipoyllysine-residue succinyltransferase activity (GO:0004149), Biological Process: tricarboxylic acid cycle (GO:0006099), Cellular Component: oxoglutarate dehydrogenase complex (GO:0045252) 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit)	dihydrolipoamide S-succinyltransferase 2-oxoglutarate dehydrogenase E2 component	Dihydrolipoamide succinyltransferase component	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark dihydrolipoamide S-succinyltransferase	2-oxoglutarate dehydrogenase E2 component	IPR001078: Catalytic domain of components of various dehydrogenase complexes; IPR003016: 2-oxo acid dehydrogenase, lipoyl-binding site 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component)	Dihydrolipoamide acyltransferase E2 component	similar to Salmonella typhi CT18 dihydrolipoamide succinyltransferase component (E2) dihydrolipoamide succinyltransferase component (E2)	similar to BR1922, 2-oxoglutarate dehydrogenase, E2 dihydrolipoamide succinyltransferase SucB, 2-oxoglutarate dehydrogenase, E2 dihydrolipoamide succinyltransferase	Dihydrolipoamide S-succinyltransferase	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex	dihydrolipoamide succinyltransferase	Dihydrolipoamide succinyltransferase component of 2-oxoglutar...	Putative dihydrolipoamide succinyltransferase E2 component	Ortholog of S. aureus MRSA252 (BX571856) SAR1424 dihydrolipoamide succinyltransferase E2 component of 2-oxoglutarate dehydrogenase complex	dihydrolipoamide succinyltransferase	
RICPR00174	2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase E1 component	Residues 1 to 933 of 933 are 99 pct identical to residues 1 to 933 of a 933 aa protein from Escherichia coli O157:H7 ref: NP_308778.1 2-oxoglutarate dehydrogenase decarboxylase component	2-oxoglutarate dehydrogenase E1 component	Transketolase:Dehydrogenase, E1 component	2-oxoglutarate dehydrogenase E1 component	SucA protein	Probable oxoglutarate dehydrogenase oxidoreductase protein	2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase, E1 subunit	conserved gene 2-oxoglutarate dehydrogenase E1 component)	2-oxoglutarate dehydrogenase, E1 subunit	identified by similarity to EGAD:6612; match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239 2-oxoglutarate dehydrogenase, E1 component	identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239 2-oxoglutarate dehydrogenase, E1 component	2-oxoglutarate dehydrogenase E1 component	Oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase E1	2-oxoglutarate decarboxylase	2-oxoglutarate dehydrogenase, E1 component	2-oxoglutarate decarboxylase	Mb1280c, sucA, len: 1214 aa. Equivalent to Rv1248c, len: 1214 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 1214 aa overlap). Probable sucA, 2-oxoglutarate dehydrogenase (EC 1.2.4.2), highly similar to several but closest to D84102 Corynebacterium glutamicum (1257 aa), FASTA scores: opt: 4418, E(): 0, (59.4% identity in 1223 aa overlap). PROBABLE 2-OXOGLUTARATE DEHYDROGENASE SUCA (Alpha-ketoglutarate dehydrogenase)	InterProMatches:IPR001017; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor (GO:0016624) 2-oxoglutarate dehydrogenase (E1 subunit)	alpha-ketoglutarate dehydrogenase 2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase E1 component	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark oxoglutarate dehydrogenase	2-oxoglutarate dehydrogenase E1 component	2-oxoglutarate dehydrogenase (decarboxylase component)	2-oxoglutarate dehydrogenase complex, E1 component	similar to Salmonella typhi CT18 2-oxoglutarate dehydrogenase E1 component 2-oxoglutarate dehydrogenase E1 component	



RICPR00175	DNA repair protein recN	DNA repair protein recn	DNA repair protein	Residues 1 to 553 of 553 are 99 pct identical to residues 1 to 553 of a 553 aa protein RECN_ECOLI sp: P05824 DNA repair protein RecN (recombination protein N)	DNA repair protein RecN	ABC transporter:DNA repair protein RecN	DNA repair protein	Probable dna repair protein	DNA repair protein recN	DNA repair protein recN	conserved gene DNA repair protein RecN	DNA repair protein recN	DNA repair protein RecN	identified by similarity to EGAD:12400; match to protein family HMM TIGR00634 DNA repair protein RecN	DNA repair protein RecN	DNA replication and repair protein RecN	identified by match to protein family HMM TIGR00634 DNA repair protein RecN	DNA repair protein recN	DNA repair and genetic recombination protein	DNA repair protein recN	DNA repair protein	ATPase	identified by similarity to SP:O25943; match to protein family HMM TIGR00634 DNA repair protein RecN	RecN	DNA repair protein RecN	DNA repair protein recN	Mb1722, recN, len: 587 aa. Equivalent to Rv1696, len: 587 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 587 aa overlap). Probable recN, DNA repair protein, similar to many e.g. RECN_ECOLI|P05824 dna repair protein recN (553 aa), FASTA scores: opt: 508, E(): 1.9e-33, (31.5% identity in 587 aa overlap). Equivalent to Z95117|MLCB1351_12 recN from Mycobacterium leprae (587 aa), FASTA scores: (76.1% identit y in 589 aa overlap).  Contains PS00017 ATP/GTP-binding site motif A (P-loop). Probable DNA repair protein recN (Recombination protein N)	InterProMatches:IPR004604; DNA repair and genetic recombination,Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310) RecN	recombination protein N DNA repair protein RecN	
RICPR00176	UPF0169 lipoprotein RP183	Residues 1 to 245 of 245 are 99 pct identical to residues 1 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289150.1 orf, conserved hypothetical protein	Putative lipoprotein	TPR repeat	Probable dna uptake lipoprotein transmembrane	Similar to hypothetical lipoprotein YfiO of Escherichia coli	Similar to competence lipoprotein comL precursor hypothetical protein	conserved gene competence lipoprotein ComL	Similar to competence lipoprotein comL precursor hypothetical protein	identified by similarity to SP:Q50985; match to protein family HMM PF03696 competence lipoprotein ComL, putative	Competence lipoprotein ComL	UPF0169 lipoprotein XF_0938	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark competence lipoprotein	putative lipoprotein	DNA uptake lipoprotein	similar to Salmonella typhi CT18 putative lipoprotein putative lipoprotein	similar to BR1422, competence protein ComL, hypothetical ComL, hypothetical competence protein	Competence lipoprotein	Competence lipoprotein comL	Putative lipoprotein	Competence lipoprotein	Similar to sp|Q9ZDY1|Y183_RICPR rc||RC0230; Ortholog to ERGA_CDS_08100 Conserved hypothetical protein	conserved family - putative DNA uptake lipoprotein hypothetical protein	Competence lipoprotein ComL	COG4105 DNA uptake lipoprotein	Lipoprotein, ComL family	Similar to: HI0177, YFIO_HAEIN conserved hypothetical lipoprotein	TPR-repeat-containing proteins NrfG protein	
RICPR00177	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	chaperone protein DnaJ	identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556 chaperone protein DnaJ	Chaperone protein dnaJ	heat shock protein, chaperonin	Chaperone protein dnaJ	Chaperone protein dnaJ 1	Mb0360, dnaJ1, len: 395 aa. Equivalent to Rv0352, len: 395 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 395 aa overlap). Probable DnaJ1, chaperone protein, equivalent to AAA25363.1|M95576 DNA J heatshock protein from Mycobacterium leprae (389 aa). Also highly similar to others. Contains both DnaJ signatures (PS00636, and PS00637). BELONGS TO THE DNAJ FAMILY.  COFACTOR: BINDS TWO ZINC IONS PER MONOMER. Note that sequence differs from DNAJ_MYCTU|P07881 due to a frameshift at the N-terminus. Note that previously known as dnaJ. PROBABLE CHAPERONE PROTEIN DNAJ1	InterProMatches:IPR001305, IPR001623; activation of DnaK,Molecular Function: chaperone activity (GO:0003754), Biological Process: protein folding (GO:0006457) heat-shock protein	Chaperone protein dnaJ	similar to BR2126, chaperone protein DnaJ DnaJ, chaperone protein DnaJ	Chaperone protein dnaJ	Chaperone protein dnaJ	identified by match to PFAM protein family HMM PF00226 dnaJ protein	Chaperone protein dnaJ	Chaperone protein dnaJ	DnaJ protein	best blastp match dbj|BAB16032.1| (AB030809) Streptococcus pneumoniae DnaJ protein homologue [Streptococcus pyogenes] heat-shock (chaperone) protein	Heat-shock protein (activation of DnaK)	COG0484 DnaJ molecular chaperone	chaperone protein DnaJ	Similar to: HI1238, DNAJ_HAEIN chaperone protein DnaJ	Molecular chaperones (contain C-terminal Zn finger domain) DnaJ protein	Chaperone protein dnaJ	heat shock protein, chaperonin	Chaperone protein dnaJ	
RICPR00178	Chaperone protein dnaK	Chaperone protein dnaK	Residues 1 to 638 of 638 are 99 pct identical to residues 1 to 638 of a 638 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285706.1 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)	Chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)	Chaperone protein dnaK	identified by similarity to EGAD:20969; match to protein family HMM PF00012 dnaK protein	Chaperone protein dnaK	chaperone protein DnaK	identified by similarity to SP:P04475; match to protein family HMM PF00012 chaperone protein DnaK	Chaperone protein dnaK	heat shock protein, chaperonin	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK	Chaperone protein dnaK2	identified by similarity to SP:O69298; match to protein family HMM PF00012 chaperone protein DnaK	Chaperone protein dnaK	Chaperone protein	Chaperone protein dnaK	

RICPR00179	PROTEASE DO	Heat shock protease	Heat shock protease	Heat shock protease	endopeptidase	DNA polymerase III subunit delta	Protease do	Heat shock protease	

RICPR00181	Uncharacterized protein RP188	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00182	Uncharacterized protein RP189	DNA polymerase III, delta subunit	DNA polymerase III delta subunit	similar to BR2057, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Similar to sp|Q9ZDX5|Y189_RICPR rc||RC0238; Ortholog to ERGA_CDS_00800 Conserved hypothetical protein	conserved hypothetical protein similar to NP_966159.1 hypothetical protein	COG1466 DNA polymerase III delta subunit	DNA polymerase III, delta subunit	delta subunit, holA DNA-directed DNA polymerase III	Similar to sp|Q9ZDX5|Y189_RICPR rc||RC0238; Ortholog to ERWE_CDS_00830 Conserved hypothetical protein	DNA polymerase III, delta subunit	DNA polymerase III delta subunit	putative DNA polymerase III, delta subunit	DNA polymerase III delta subunit	DNA polymerase III, delta subunit	DNA polymerase III, delta subunit identified by similarity to GB:AAS14093.1; match to protein family HMM PF06144	DNA polymerase III, delta subunit	conserved hypothetical protein identified by similarity to GB:AAS14093.1; match to protein family HMM PF06144; match to protein family HMM TIGR01128	DNA polymerase III	DNA polymerase III, delta subunit TIGRFAM: DNA polymerase III, delta subunit PFAM: DNA polymerase III, delta KEGG: rpc:RPC_0286 DNA polymerase III, delta subunit	DNA polymerase III, delta subunit	DNA polymerase III, delta subunit TIGRFAM: DNA polymerase III, delta subunit PFAM: DNA polymerase III, delta KEGG: mlo:mlr4475 putative DNA polymerase III, delta subunit	DNA polymerase III, delta subunit	DNA polymerase III, delta subunit	DNA polymerase III, delta subunit	DNA polymerase III	DNA polymerase III subunit delta	DNA polymerase III, delta subunit	
RICPR00183	UBIQUINONE BIOSYNTHESIS PROTEIN COQ7	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Ubiquinone biosynthesis protein COQ7	Similar to sp|Q99807|COQ7_HUMAN sp|Q63619|COQ7_RAT sp|P97478|COQ7_MOUSE; Ortholog to ERGA_CDS_02200 Conserved hypothetical protein (similar to human Ubiquinone biosynthesis protein Coq7)	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy putative ubiquinone biosynthesis protein	COG2941 CAT5 ubiquinone biosynthesis protein COQ7 ubiquinone biosynthesis protein	COG2941 ubiquinone biosynthesis protein	2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Coq7 family protein	go_component: mitochondrion [goid 0005739]; go_process: ubiquinone biosynthesis [goid 0006744] ubiquinone biosynthesis protein COQ7 homolog, putative	Similar to sp|Q99807|COQ7_HUMAN sp|Q63619|COQ7_RAT sp|P97478|COQ7_MOUSE; Ortholog to ERWE_CDS_02240 Conserved hypothetical protein (similar to human Ubiquinone biosynthesis protein Coq7)	conserved hypothetical protein	putative ubiquinone biosynthesis protein	Ubiquinone biosynthesis protein Coq7	Coq7 family protein	Ubiquinone biosynthesis protein COQ7	Coq7 family protein	putative ubiquinone biosynthesis protein	putative ubiquinone biosyntheis protein COQ7	Ubiquinone biosynthesis protein coq7	Ubiquinone biosynthesis protein COQ7 COG2941	Ubiquinone biosynthesis protein COQ7	Coq7 family protein	Ubiquinone biosynthesis protein COQ7	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Coq7 family protein	ubiquinone biosynthesis protein COG2941 Ubiquinone biosynthesis protein COQ7	Ubiquinone biosynthesis protein COQ7	
RICPR00184	Probable cytochrome c oxidase subunit 3	Probable cytochrome c oxidase subunit III transmembrane protein	cytochrome c oxidase, subunit III	conserved gene cytochrome c oxidase, subunit III	cytochrome c oxidase, subunit III	cytochrome c oxidase subunit III	identified by match to protein family HMM PF00510 cytochrome c oxidase, subunit III	Cytochrome-c oxidase, subunit III	Cytochrome c oxidase subunit III	Probable cytochrome c oxidase subunit 3	Cytochrome-c oxidase	Probable cytochrome c oxidase subunit 3	Mb2216, ctaE, len: 203 aa. Equivalent to Rv2193, len: 203 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 203 aa overlap). Probable ctaE, cytochrome c oxidase polypeptide III (cox3) (EC 1.9.3.1), with strong similarity to others e.g. COX3_SYNY3|Q06475 (29.8% identity in 225 aa overlap). PROBABLE CYTOCHROME C OXIDASE (SUBUNIT III) CTAE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cytochrome C oxidase subunit III	Cytochrome c oxidase, subunit 3	similar to BR0472, cytochrome c oxidase, subunit III CoxC, cytochrome c oxidase, subunit III	Cytochrome C oxidase subunit III	Cytochrome c oxidase, subunit III	Similar to sp|Q9ZDX3|COX3_RICPR rc||coxC sp|P48872|COX3_CHOCR; Ortholog to ERGA_CDS_00040 Probable cytochrome c oxidase polypeptide III	COG1845 CyoC heme/copper-type cytochrome/quinol oxidase subunit 3 cytochrome C oxidase subunit III	Cytochrome c oxidase, subunit III	Cytochrome c oxidase, subunit III	Cytochrome c oxidase subunit III	Similar to Corynebacterium glutamicum cytochrome c oxidase subunit III CtaE or cgl2192 SWALL:Q9AEL8 (EMBL:AJ306418) (205 aa) fasta scores: E(): 7.2e-24, 47.93% id in 194 aa cytochrome c oxidase subunit III	Cytochrome c oxidase, subunit III	cytochrome C oxidase subunit III	identified by match to protein family HMM PF00510 cytochrome c oxidase subunit III	similar to subunit III, coxC Rickettsia cytochrome-c oxidase	
RICPR00185	Uncharacterized protein RP192	VirB2-like protein	Putative uncharacterized protein	VirB2-like protein	VirB2-like protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	VirB2 protein	
RICPR00186	Uncharacterized protein RP193	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00187	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	Residues 1 to 274 of 274 are 100 pct identical to residues 1 to 274 of a 274 aa protein from Escherichia coli K12 ref: NP_414708.1 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	conserved gene 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	identified by similarity to SP:P03948; match to protein family HMM PF00132; match to protein family HMM TIGR00965 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	IPR001451: Bacterial transferase hexapeptide repeat 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	Tetrahydrodipicolinate N-succinyltransferase	similar to Salmonella typhi CT18 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	similar to BRA1028, 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD, 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N-succin	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase	Similar to sp|Q9ZDX0|DAPD_RICPR sp|P56220|DAPD_MYCBO sp|P03948|DAPD_ECOLI rc||dapD; Ortholog to ERGA_CDS_00270 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	COG2171 DapD tetrahydrodipicolinate N-succinyltransferase similar to NP_220583.1 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase	COG2171 tetrahydrodipicolinate N-succinyltransferase	tetrahydrodipicolinate N-succinyltransferase; THP succinyltransferase; tetrahydropicolinate succinylase; Similar to: HI1634, DAPD_HAEIN 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	



RICPR00188	Putative uncharacterized protein RP196	identified by match to protein family HMM PF00582 universal stress protein family protein	universal stress protein family	Universal stress protein UspA and related nucleotide-binding proteins UspA protein	Similar to related nucleotide-binding proteins Universal stress protein UspA	Pfam: universal stress protein, UspA hypothetical protein	UspA	Universal stress protein UspA and related nucleotide-binding proteins	UspA	UspA PFAM: UspA: (5.5e-19) KEGG: sil:SPO2185 universal stress protein family protein, ev=1e-26, 45% identity	UspA	UspA	universal stress family protein, putative	UspA domain protein PFAM: UspA domain protein KEGG: rpc:RPC_1477 UspA	UspA domain protein PFAM: UspA domain protein KEGG: rsp:RSP_3802 hypothetical protein	Putative Universal stress protein	UspA PFAM: UspA KEGG: rsp:RSP_3802 hypothetical protein	Putative Universal stress protein	Putative uncharacterized protein	Universal stress protein UspA	Putative uncharacterized protein	Universal stress protein UspA and related nucleotide-binding proteins	Universal stress protein UspA	UspA domain protein	universal stress protein family	Putative uncharacterized protein	UspA domain protein	Putative uncharacterized protein	UspA domain protein	
RICPR00189	Putative uncharacterized protein RP197	identified by similarity to SP:P12920; match to protein family HMM TIGR02122 TRAP transporter solute receptor, TAXI family	Immunogenic protein	similar to BR1194, outer membrane protein, hypothetical outer membrane protein, hypothetical	Similar to sp|P12920|BCSP_BRUME rc||RC0259; Ortholog to ERGA_CDS_04130 Conserved hypothetical protein	conserved family - putative cell surface protein hypothetical protein	immunogenic protein	Predicted periplasmic binding protein Hypothetical protein	Periplasmic binding protein, putative	TRAP-type transporter	Similar to sp|P12920|BCSP_BRUME rc||RC0259; Ortholog to ERWE_CDS_04180 Conserved hypothetical protein	COG2358 TRAP-type uncharacterized transport system	predicted TRAP-type transport system periplasmic protein 1	putative immunogenic protein	Tetracycline resistance protein TetB	TRAP transporter solute receptor, TAXI family	TRAP transporter solute receptor, TAXI family identified by match to protein family HMM TIGR02122	TRAP transporter solute receptor, TAXI family	TRAP transporter solute receptor, TAXI family	TRAP transporter solute receptor, TAXI family	TRAP-type uncharacterized transport system, periplasmic component	TRAP-type uncharacterized transport system, periplasmic component COG2358	TRAP transporter solute receptor, TAXI family TIGRFAM: TRAP transporter solute receptor, TAXI family: (1.6e-104) KEGG: dra:DR1649 immunogenic protein, ev=1e-132, 76% identity	TRAP transporter solute receptor, TAXI family	immunogenic protein identified by similarity to SP:P12920; match to protein family HMM TIGR02122	TRAP transporter solute receptor, TAXI family	TRAP transporter solute receptor, TAXI family precursor	immunogenic protein identified by similarity to SP:P12920; match to protein family HMM TIGR02122	TRAP transporter solute receptor, TAXI family	
RICPR00190	Uncharacterized protein RP198	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00191	2Fe-2S ferredoxin	Adrenodoxin family ferredoxin	Probable ferredoxin [2fe-2s] protein	Ferredoxin, 2Fe-2S	identified by match to protein family HMM PF00111 iron-sulfur cluster-binding protein	Ferredoxin	IPR001055: Adrenodoxin [2FE-2S] ferredoxin, electron carrer protein, believed to be involved in assembly of Fe-S clusters	Ferredoxin	similar to Salmonella typhi CT18 ferredoxin ferredoxin	Adrenodoxin family ferredoxin	Putative ferredoxin	Similar to sp|Q92J08|FDX2_RICCN sp|Q9ZDW6|FER2_RICPR; Ortholog to ERGA_CDS_04300 Ferredoxin, 2Fe-2S	COG0633 Fdx ferredoxin similar to NP_220587.1; go_process: 0006118 ferredoxin [2Fe-2S] adrenodoxin-like precursor adx1	Ferredoxin, 2Fe-2S	COG0633 ferredoxin	ferredoxin, 2Fe-2s	Similar to: HI0372, FER_HAEIN ferredoxin, 2Fe-2S	Ferredoxin Fdx protein	Ferredoxin, 2Fe-2S	Ferredoxin	[2FE-2S] ferredoxin	2Fe-2S ferredoxin involved in the assembly of Fe-S clusters	Ferredoxin, 2Fe-2S	identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 ferredoxin, 2Fe-2S	ferredoxin	similar to 2Fe-2S Caulobacter crescentus CB15 ferredoxin	go_function: electron transporter activity [goid 0005489]; go_function: electron carrier activity [goid 0009055]; go_process: electron transport [goid 0006118] adrenodoxin precursor, putative	Similar to sp|Q92J08|FDX2_RICCN sp|Q9ZDW6|FER2_RICPR; Ortholog to ERWE_CDS_04360 Ferredoxin, 2Fe-2S	
RICPR00192	Chaperone protein hscA homolog	Chaperone protein hscA homolog	Molecular chaperone, DnaK	Chaperone protein hscA	Similar to sp|Q9ZDW5|HSCA_RICPR sp|P36541|HSCA_ECOLI sp|P44669|HSCA_HAEIN sp|Q51382|HSCA_PSEAE; Ortholog to ERGA_CDS_04290 Chaperone protein hscA homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor heat shock protein	COG0443 DnaK molecular chaperone heat shock protein	Chaperone protein hscA homolog	chaperone protein HscA	Similar to: HI0373, HSCA_HAEIN chaperone protein HscA	Molecular chaperone DnaK protein	Chaperone protein hscA homolog	Chaperone protein hscA	identified by similarity to SP:P36541; match to protein family HMM PF00012; match to protein family HMM TIGR01991 chaperone protein HscA	Similar to sp|Q9ZDW5|HSCA_RICPR sp|P36541|HSCA_ECOLI sp|P44669|HSCA_HAEIN sp|Q51382|HSCA_PSEAE; Ortholog to ERWE_CDS_04350 Chaperone protein hscA homolog	identified by match to protein family HMM PF00012; match to protein family HMM TIGR01991 Fe-S protein assembly chaperone HscA	identified by match to protein family HMM PF00012; match to protein family HMM TIGR01991 Fe-S protein assembly chaperone HscA	Fe-S protein assembly chaperone HscA	Fe-S protein assembly chaperone HscA	Heat shock protein HscA	Heat shock protein Hsp70	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 12871959, 15100228; Product type mc : molecular chaperone chaperone (Hsp70 family), involved in assembly of Fe-S clusters (involved in the maturation of iscU)	putative chaperone protein HscA identified by similarity to SP:P36541; match to protein family HMM PF00012	chaperone protein start codon not provided	Heat shock protein 70	Fe-S protein assembly chaperone HscA	Fe-S protein assembly chaperone HscA	transcript_id=ENSDNOT00000003320	Heat shock protein hscA	
RICPR00193	Co-chaperone protein hscB homolog	Co-chaperone Hsc20	Co-chaperone Hsc20	co-chaperone Hsc20 identified by similarity to SP:P36540; match to protein family HMM PF00226; match to protein family HMM PF07743	Chaperone protein HscB	Co-chaperone protein	Co-chaperone HscB	Co-chaperone Hsc20	Co-chaperone HscB	Co-chaperone HscB	chaperone protein	Co-chaperone HscB	Chaperone protein HscB	Chaperone protein HscB	Co-chaperone protein hscB homolog	Co-chaperone protein hscB homolog	Co-chaperone Hsc20	
RICPR00194	Ribonuclease HII	Ribonuclease HII	Ribonuclease	Residues 1 to 198 of 198 are 99 pct identical to residues 1 to 198 of a 198 aa protein from Escherichia coli K12 ref: NP_414725.1 RNAse HII, degrades RNA of DNA-RNA hybrids	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Similar to ribonuclease HII hypothetical protein	Ribonuclease HII	identified by similarity to EGAD:108435; match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	ribonuclease HII	identified by similarity to SP:P10442; match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	Ribonuclease HII	identified by match to protein family HMM PF01351 ribonuclease HII	Ribonuclease HII	Ribonuclease	Ribonuclease HII	Mb2926c, rnhB, len: 264 aa. Equivalent to Rv2902c, len: 264 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 264 aa overlap). Probable rnhB, ribonuclease HII (EC 3.1.26.4), equivalent to O33022|RNH2_MYCLE|RNHB|ML1611|MLCB250.40 RIBONUCLEASE HII from Mycobacterium leprae (240 aa), FASTA scores: opt: 1242, E(): 6.9e-72, (76.75% identity in 245 aa overlap).  Also similar (but longer ~20 aa) to others e.g.  Q9HXY9|RNHB|PA3642 RIBONUCLEASE HII from Pseudomonas aeruginosa (201 aa), FASTA scores: opt: 572, E(): 3.1e-29, (52.7% identity in 184 aa overlap); Q9PEI7|RNH2_XYLFA|RNHB|XF1041 RIBONUCLEASE HII from Xylella fastidiosa (234 aa), FASTA scores: opt: 556, E(): 3.6e-28, (50.25% identity in 185 aa overlap); P10442|RNH2_ECOLI|RNHB|B0183 RIBONUCLEASE HII from Escherichia coli strain K-12 (213 aa), FASTA scores: opt: 519, E(): 7.4e-26, (48.65% identity in 183 aa overlap); etc. BELONGS TO THE RNASE HII FAMILY. COFACTOR: MANGANESE (BY SIMILARITY). PROBABLE RIBONUCLEASE HII PROTEIN RNHB (RNASE HII)	InterProMatches:IPR001352; Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523) ribonuclease HII	
RICPR00195	UvrABC system protein B	Excinuclease ABC subunit b	UvrABC system protein B	Residues 1 to 673 of 673 are 99 pct identical to residues 1 to 673 of a 673 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286542.1 DNA repair; excision nuclease subunit B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	conserved gene excinuclease ABC subunit B	excinuclease ABC subunit B	UvrABC system protein B	identified by similarity to EGAD:24137; match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631 excinuclease ABC, B subunit	UvrABC system protein B	Excinuclease ABC subunit B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	excinuclease ABC subunit B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	UvrABC system protein B	identified by similarity to SP:P37954; match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631 excinuclease ABC, B subunit	UvrABC system protein B	
RICPR00196	Glutaredoxin-1	Residues 1 to 83 of 83 are 98 pct identical to residues 1 to 83 of a 83 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290193.1 glutaredoxin 3	Glutaredoxin	GrxC protein	Similar to glutaredoxin Grx hypothetical protein	conserved gene glutaredoxin 3	Similar to glutaredoxin Grx hypothetical protein	glutaredoxin	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 glutaredoxin	Glutaredoxin 3	Glutaredoxin	Glutaredoxin	Glutaredoxin 3	Glutaredoxin 3	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glutaredoxin	IPR002109: Glutaredoxin glutaredoxin 3	Glutaredoxin	similar to Salmonella typhi CT18 glutaredoxin 3 glutaredoxin 3	similar to BR1876, glutaredoxin 3 GrxC, glutaredoxin 3	Glutaredoxin	Glutaredoxin	Glutaredoxin	Putative glutaredoxin	Glutaredoxin	Similar to sp|Q9ZDW1|GLRX_RICPR sp|P37687|GLR3_ECOLI; Ortholog to ERGA_CDS_08530 Glutaredoxin	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type c : carrier glutaredoxin	COG0695 GrxC glutaredoxin and related proteins; go_process: 0006118 glutaredoxin 3	COG0695 glutaredoxin 3	
RICPR00197	MITOCHONDRIAL TRANSPORTER ATM1	Probable ABC transport protein, msbA family	ABC transporter	multidrug ABC transporter ATP-binding protein	ABC transporter, ATP-binding protein	Putative ABC transport protein with fused ATP binding and permease domains	involved in Fe-S cluster assembly; COG5265 ABC-type transport system ATPase components	multidrug resistance ABC transporter ATP-binding and permease protein	, predicted protein, len = 705 aa, probably ABC transporter-like protein; predicted pI = 6.2225; good similarity to many ABC transporter-like and ATP-binding cassette proteins in diverse organisms; contains an ABC transporter transmembrane region domain, an ABC transporter and 5 probable transmembrane helices (aa 105-127, 142-164, 224-246, 256-278 and 348-370) ABC transporter, putative	similar to ATM1 (GI:575393) (Saccharomyces cerevisiae); go_component: mitochondrial inner membrane [goid 0005743]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_function: ATPase activity [goid 0016887]; go_process: iron ion homeostasis [goid 0006879]; go_process: iron-sulfur cluster assembly [goid 0016226]; go_process: mitochondrial iron ion transport [goid 0048250] mitochondrial ABC-type iron exporter (Atm1), putative	putative composite ATP-binding transmembrane ABC transporter protein	identified by match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding/permease protein	ABC transporter ATP-binding and permease; multidrug resistance protein	ABC transporter, transmembrane region:ABC transporter related	Multidrug resistance protein Atm1	similar to gi|57286271|gb|AAW38365.1| [Staphylococcus aureus subsp. aureus COL], percent identity 83 in 578 aa, BLASTP E(): 0.0 ABC-type multidrug protein lipid transport system ATPase component	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type t : transporter putative ABC transporter, ATP-binding protein	COG5265, ABC-type transport system involved in Fe-S cluster assembly; COG1132, MdlB, ABC-type multidrug transport system Citation: PMID: 10529352 ABC transporter, fused ATPase and inner membrane subunits	ABC transporter related	ABC transporter related	putative ABC transporter, ATP-binding protein/permease protein identified by match to protein family HMM PF00005; match to protein family HMM PF00664	ABC-type transport system ATPase	ATP-binding cassette, sub-family B (MDR/TAP), member 7 [Source:HGNC Symbol;Acc:48]	ABC transporter related	truncated ATP-binding ABC transporter	transcript_id=ENSOCUT00000016852	ABC transporter, fused ATPase and innermembrane subunits	Multidrug resistance protein Atm1	
RICPR00198	DNA gyrase subunit A	DNA gyrase subunit a	DNA gyrase subunit A	Residues 1 to 875 of 875 are 100 pct identical to residues 1 to 875 of a 875 aa protein from Escherichia coli K12 ref: NP_416734.1 DNA gyrase, subunit A, type II topoisomerase	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase/topoisomerase IV, subunit A	DNA gyrase subunit A	GyrA protein	DNA gyrase subunit A	DNA gyrase subunit A	Probable dna gyrase (Subunit a)(Type II topoisomerase) protein	DNA gyrase subunit A	DNA gyrase, subunit A, type II topoisomerase	conserved gene DNA gyrase, A subunit	DNA gyrase, subunit A, type II topoisomerase	DNA gyrase, A subunit	identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA gyrase A subunit	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	DNA gyrase, subunit A	DNA gyrase A subunit	DNA gyrase subunit A	DNA gyrase subunit A	DNA Gyrase Subunit A	DNA gyrase A subunit	identified by similarity to SP:Q03470; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063 DNA gyrase, A subunit	

RICPR00200	Peptide deformylase	Polypeptide deformylase	Residues 1 to 169 of 169 are 99 pct identical to residues 1 to 169 of a 169 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289848.1 peptide deformylase	Peptide deformylase	Peptide deformylase	Peptide deformylase 2	Peptide deformylase	Peptide deformylase 1	Peptide deformylase	similar to polypeptide deformylase hypothetical protein	conserved gene peptide deformylase	similar to polypeptide deformylase hypothetical protein	Peptide deformylase	polypeptide deformylase	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase	Peptide deformylase	Peptide deformylase	identified by similarity to SP:P94462; match to protein family HMM PF01327; match to protein family HMM TIGR00079 peptide deformylase	Peptide deformylase	Peptide deformylase	Mb0437c, def, len: 197 aa. Equivalent to Rv0429c, len: 197 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 197 aa overlap). Probable def, polypeptide deformylase (EC 3.5.1.31), equivalent to CAC30884.1|AL583923 polypeptide deformylase from Mycobacterium leprae (197 aa). Also similar to others e.g.  DEF_ECOLI|P27251|95874|S23107 polypeptide deformylase from Escherichia coli (169 aa), FASTA scores: opt: 179, E(): 1.8e-05, (34.6% identity in 162 aa overlap); etc. BELONGS TO THE POLYPEPTIDE DEFORMYLASE FAMILY. COFACTOR: BINDS 1 ZINC ION. PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE)	InterProMatches:IPR000181; Biological Process: protein biosynthesis (GO:0006412), Molecular Function: formylmethionine deformylase activity (GO:0008463) polypeptide deformylase	Peptide deformylase	Peptide deformylase	IPR000181: Formylmethionine deformylase peptide deformylase	N-formylmethionyl-tRNA deformylase	similar to Salmonella typhi Ty2 polypeptide deformylase polypeptide deformylase	Peptide deformylase	similar to BRA1035, polypeptide deformylase Def-2, polypeptide deformylase	
RICPR00201	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Residues 1 to 315 of 315 are 98 pct identical to residues 1 to 315 of a 315 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289849.1 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Fmt	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	similar to methionyl-tRNA formyltransferase hypothetical protein	conserved gene methionyl tRNA formyltransferase	similar to methionyl-tRNA formyltransferase hypothetical protein	Methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	identified by similarity to SP:O85732; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 methionyl-tRNA formyltransferase	Methionyl-tRNA formyltransferase	



RICPR00202	PUTATIVE ATPASE N2B	Residues 1 to 375 of 375 are 98 pct identical to residues 1 to 375 of a 375 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289800.1 yhcM gene product	Putative uncharacterized protein	YhcM protein	Putative atpase protein	Similar to unknown protein YhcM of Escherichia coli	similar to predicted ATPase hypothetical protein	conserved gene ATPase N2B (nucleotide (GTP) binding protein)	similar to predicted ATPase hypothetical protein	identified by match to protein family HMM PF03969 ATPase, AFG1 family	Probable nucleotide-binding protein	ATPase	ATP-binding protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATPase	IPR005654: AFG1-like ATPase putative ATPase	similar to Salmonella typhi CT18 putative ATP/GTP-binding protein putative ATP/GTP-binding protein	similar to BR1929, conserved hypothetical protein conserved hypothetical protein	ATPase	Putative uncharacterized protein	Putative uncharacterized protein	Putative nucleotide-binding protein	Similar to rc||n2B rp||n2B sp|P46441|N2B_HAEIR sp|P46442|YHCM_ECOLI; Ortholog to ERGA_CDS_06410 Putative ATPase n2B	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative ATPase	conserved family - putative ATPase hypothetical protein	ATPase	Similar to YHCM_ECOLI (P46442) Hypothetical protein yhcM from E. coli (375 aa). FASTA: opt: 872 Z-score: 1033.2 E(): 1.2e-49 Smith-Waterman score: 898; 39.833 identity in 359 aa overlap ORF ftt0054 ATPase	Putative ATPase	predicted ATPase	ATPase	
RICPR00203	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine--tRNA ribosyltransferase- isomerase	Residues 1 to 356 of 356 are 100 pct identical to residues 1 to 356 of a 356 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286144.1 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	conserved gene S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	identified by similarity to SP:O32054; match to protein family HMM PF02547; match to protein family HMM TIGR00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine-tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	identified by similarity to SP:P21516; match to protein family HMM PF02547; match to protein family HMM TIGR00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	InterProMatches:IPR003699; Molecular Function: catalytic activity (GO:0003824), Biological Process: queuosine biosynthesis (GO:0008616) S-adenosylmethionine tRNA ribosyltransferase	queuosine biosynthesis protein QueA S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark S-adenosylmethionine:tRNA ribosyltransferase-isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	S-adenosylmethionine:tRNA ribosyltransferase- isomerase	
RICPR00204	ABC TRANSPORTER ATP-BINDING PROTEIN	Similarities with ABC-type transport protein	similar to multidrug resistance ABC transporter ATP-binding protein hypothetical protein	conserved gene multidrug resistance ABC transporter ATP binding protein	similar to multidrug resistance ABC transporter ATP-binding protein hypothetical protein	ABC transporter, ATP-binding and permease protein	identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, transmembrane ATP-binding protein	Probable ABC transporter, ATP-binding protein	ABC transporter	similar to BR1545, identified by identity to GB:AAD02044.1; ABC transporter ATP-binding protein ABC transporter, ATP-binding protein	ATP binding transporter 1	Putative ABC transporter	Similar to: HI1051, YA51_HAEIN conserved hypothetical ABC transporter ATP-binding protein	ABC-type multidrug/protein/lipid transport system, ATPase component MdlB protein	ABC transporter, ATP-binding protein	multidrug resistance ABC transporter, ATP-binding and permease	ABC transporter, transmembrane region:ABC transporter	Multidrug resistance ABC transporter ATP-binding protein	Best Blastp Hit: emb|CAB85434.1| (AL162758) putative ABC transporter [Neisseria meningitidis] COG1132 ABC-type multidrug/protein/lipid putative ABC transporter, ATP-binding protein	ABC transporter, transmembrane region:ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase	ABC multidrug efflux pump, fused ATPase and inner membrane subunits	ABC transporter related	ABC transporter related	ABC transporter-like	Multidrug resistance ABC transporter ATP-binding protein	ABC transporter related	ABC transporter, transmembrane region	transcript_id=ENSETET00000013322	ABC transporter permease and ATP-binding protein	
RICPR00205	Uncharacterized protein RP215	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00206	CYTOCHROME D UBIQUINOL OXIDASE SUBUNIT I	similar to cytochrome d ubiquinol oxidase subunit I hypothetical protein	conserved gene cytochrome D ubiquinol oxidase subunit I	similar to cytochrome d ubiquinol oxidase subunit I hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cyanide insensitive terminal oxidase	cytochrome BD2 subunit I	similar to Salmonella typhi CT18 probable terminal oxidase subunit I probable terminal oxidase subunit I	COG1271 cytochrome bd-type quinol oxidase subunit 1	Ubiquinol oxidase subunit I, cyanide insensitive	Similar to Q92IY2 Cytochrome d ubiquinol oxidase subunit I from Rickettsia conorii (456 aa). FASTA: opt: 1445 Z-score: 1673.2 E(): 2.4e-85 Smith-Waterman score: 1443; 49.083identity in 436 aa overlap. Contains an in-frame stop codon after aa 80 pseudo cytochrome oxidase bd-II, subunit I, pseudogene	Cytochrome bd-type quinol oxidase, subunit 1	Cytochrome BD2 subunit I	Cyanide insensitive terminal oxidase	Cytochrome d ubiquinol oxidase subunit I	identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654 cytochrome d ubiquinol oxidase, subunit I	Cytochrome bd ubiquinol oxidase, subunit I	Cytochrome d ubiquinol oxidase subunit I	Cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I	Cytochrome d ubiquinol oxidase subunit I	Cytochrome bd-type quinol oxidase, subunit 1 COG1271	Cytochrome bd ubiquinol oxidase, subunit I	ubiquinol oxidase family protein identified by match to protein family HMM PF01654	Cytochrome bd ubiquinol oxidase, subunit I	Cyanide-insensitive cytochrome bd-type quinol oxidase subunit I	cytochrome bd ubiquinol oxidase, subunit I	cytochrome bd ubiquinol oxidase, subunit I	pseudo cytochrome oxidase bd-II, subunit I, pseudogene Similar to Q92IY2 Cytochrome d ubiquinol oxidase subunit I from Rickettsia conorii (456 aa). FASTA: opt: 1445 Z-score: 1673.2 E(): 2.4e-85 Smith-Waterman score: 1443; 49.083identity in 436 aa overlap. Contains an in-frame stop codon after aa 80	
RICPR00207	CYTOCHROME D UBIQUINOL OXIDASE SUBUNIT II	Putative transmembrane cytochrome bd-II oxidase (Subunit II) oxidoreductase protein	similar to cytochrome d ubiquinol oxidase subunit II hypothetical protein	conserved gene cytochrome D ubiquinol oxidase subunit II, cyanide insensitive	similar to cytochrome d ubiquinol oxidase subunit II hypothetical protein	identified by similarity to GP:4514629 cytochrome d ubiquinol oxidase, subunit II	cytochrome oxidase d subunit II	cytochrome BD2 subunit II	similar to Salmonella typhi CT18 probable terminal oxidase subunit II probable terminal oxidase subunit II	cytochrome D ubiquinol oxidase subunit II homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1060 putative membrane protein	cytochrome D ubiquinol oxidase subunit II homolog	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ubiquinol oxidase subunit II, cyanide insensitive	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome d ubiquinol oxidase subunit II CydB or Cyd-2 or B0734 or C0812 or z0901 or ECS0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 8.1e-22, 26.41% id in 390 aa, and to Bacteroides thetaiotaomicron cytochrome d ubiquinol oxidase subunit II BT1209 SWALL:AAO76316 (EMBL:AE016930) (380 aa) fasta scores: E(): 4e-138, 90.23% id in 379 aa, and to Campylobacter jejuni cytochrome bd oxidase subunit II CydB or CJ0082 SWALL:Q9PJ42 (EMBL:AL139074) (374 aa) fasta scores: E(): 4.6e-50, 50.79% id in 376 aa putative cytochrome d ubiquinol oxidase subunit II	Similar to Q87H27 Cytochrome BD2, subunit II from Vibrio parahaemolyticus (335 aa). FASTA: opt: 573 Z-score: 669.5 E(): 1.9e-29 Smith-Waterman score: 750; 34.743 identity in 331 aa overlap cytochrome oxidase bd-II, subunit II	Cytochrome BD2 subunit II	Cytochrome d ubiquinol oxidase subunit II	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 cytochrome d ubiquinol oxidase, subunit II	identified by similarity to GB:CAA71556.1; match to protein family HMM PF02322; match to protein family HMM TIGR00203 cytochrome d ubiquinol oxidase, subunit II	Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioB TR:O07441 (EMBL:Y10528) (335 aa) fasta scores: E(): 2.4e-06, 21.951% id in 328 aa, and to Bacillus halodurans cytochrome D ubiquinol oxidase subunit II BH3974 TR:Q9K5W3 (EMBL:AP001520) (338 aa) fasta scores: E(): 4.3e-66, 53.550% id in 338 aa putative membrane protein	Cytochrome d ubiquinol oxidase subunit II	identified by similarity to GP:4514629 cytochrome d ubiquinol oxidase, subunit II	Cytochrome d ubiquinol oxidase, subunit II	cytochrome d ubiquinol oxidase, subunit II identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203	cytochrome d ubiquinol oxidase, subunit II identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203	cytochrome D ubiquinol oxidase, subunit II	cytochrome d ubiquinol oxidase, subunit II	cytochrome d ubiquinol oxidase subunit II	cytochrome d ubiquinol oxidase, subunit II	
RICPR00208	Uncharacterized glycosyltransferase RP128	Lipopolysaccharide core biosynthesis glycosyl transferase	Probable glycosyl transferase protein	Lipopolysaccharide core biosynthesis glycosyl transferase KdtX	Similar to lipopolysaccharide biosynthesis glycosyltransferase hypothetical protein	conserved gene lipopolysaccharide biosynthesis glycosyltransferase	Similar to lipopolysaccharide biosynthesis glycosyltransferase hypothetical protein	Probable beta-1,4-glucosyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipopolysaccharide core biosynthesis glycosyl transferase	Lipopolysaccharide core biosynthesis glycosyl transferase	Lipopolysaccharide core biosynthesis glycosyl transferase	Beta-1,4-glucosyltransferase	alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase	Similar to: HI0653, Y653_HAEIN UDP-glucose--lipooligosaccharide glucosyltransferase	Glycosyltransferases involved in cell wall biogenesis WcaA protein	lipopolysaccharide core biosynthesis glycosyl transferase	UDP-glucose--Lipooligosaccharide beta 1-4 glucosyltransferase	Glycosyl transferase, family 2	Beta 1,4 glucosyltransferase	Best Blastp Hit: emb|CAB85178.1| (AL162757) beta-1,4-glucosyltransferase [Neisseria meningitidis] COG0463 Glycosyltransferases involved in cell; LgtF putative beta-1,4-glucosyltransferase	probable beta-1,4-glucosyltransferase	lipopolysaccharide core biosynthesis glycosyl transferase	lipopolysaccharide glycosyltransferase	glycosyl transferase, family 2	Glycosyl transferase, family 2	Glycosyl transferase, family 2	Beta 1,4 glucosyltransferase	Glycosyltransferase involved in cell wall biogenesis COG0463	Glycosyl transferase, family 2	
RICPR00209	Uncharacterized zinc protease RP219	Metalloprotease	identified by match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	PepR	Processing protease protein	Uncharacterized zinc protease Rv2782c/MT2852	Mb2805c, pepR, len: 438 aa. Equivalent to Rv2782c, len: 438 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 438 aa overlap). Probable pepR, protease/peptidase (EC 3.4.99.-), equivalent to O32965|YR82_MYCLE|ML0855|MLCB22.26c HYPOTHETICAL ZINC PROTEASE from Mycobacterium leprae (445 aa), FASTA scores: opt: 2346, E(): 4.3e-146, (84.3% identity in 421 aa overlap). Also highly similar to others e.g.  O86835|YA12_STRCO|SC9A10.02 from Streptomyces coelicolor (459 aa), FASTA scores: opt: 1394, E(): 1.1e-83, (51.9% identity in 416 aa overlap); Q04805|YMXG_BACSU|YMXG from Bacillus subtilis (409 aa), FASTA scores: opt: 1014, E(): 7.9e-59, (37.55% identity in 410 aa overlap); Q9KA85|BH2405 from Bacillus halodurans (413 aa), FASTA scores: opt: 967, E(): 9.6e-56, (38.6% identity in 417 aa overlap); etc. Contains PS00143 Insulinase family, zinc-binding region signature. BELONGS TO PEPTIDASE FAMILY M16, ALSO KNOWN AS THE INSULINASE FAMILY. COFACTOR: REQUIRES DIVALENT CATIONS FOR ACTIVITY. BINDS ZINC. PROBABLE ZINC PROTEASE PEPR	InterProMatches:IPR001431; involved in the regulation of aprE transcription,Molecular Function: metalloendopeptidase activity (GO:0004222), Biological Process: proteolysis and peptidolysis (GO:0006508) peptidase	Zn-dependent protease	Putative zinc protease	Zn-dependent peptidase	similar to BR0483, processing protease processing protease	Processing protease protein	Similar to sp|O05945|Y219_RICPR rc||mpp sp|Q04805|YMXG_BACSU sp|O32965|YR82_MYCLE; Ortholog to ERGA_CDS_07720 Hypothetical zinc protease	COG0612 PqqL predicted Zn-dependent peptidases similar to NP_220605.1 mitochondrial processing protease	COG0612 predicted Zn-dependent peptidase	metallo-peptidase, Clan ME, Family M16	Putative processing protease protein	zinc protease	go_component: mitochondrion [goid 0005739]; go_function: mitochondrial processing peptidase activity [goid 0004240]; go_process: proteolysis and peptidolysis [goid 0006508] mitochondrial processing peptidase, beta subunit, putative	Similar to sp|O05945|Y219_RICPR rc||mpp sp|Q04805|YMXG_BACSU sp|O32965|YR82_MYCLE; Ortholog to ERWE_CDS_07810 Hypothetical zinc protease	mitochondrial processing peptidase	similar to mitochondrial protease Mpp	peptidase M16	Insulinase-like:Peptidase M16, C-terminal	Insulinase-like peptidase, family M16:Peptidase M16 inactive	identified by similarity to SP:Q04805; match to protein family HMM PF00675; match to protein family HMM PF05193 peptidase, M16 family	Predicted Zn-dependent peptidases	contains both N- and C-terminal doamins of the M16 family peptidases peptidase, M16 family	
RICPR00210	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Residues 4 to 240 of 240 are 100 pct identical to residues 1 to 237 of a 237 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289029.1 phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	identified by similarity to EGAD:24421; match to protein family HMM PF01259; match to protein family HMM TIGR00081 phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	phosphoribosyl aminoidazole succinocarboxamide synthetase	identified by similarity to SP:P12046; match to protein family HMM PF01259; match to protein family HMM TIGR00081 phosphoribosylaminoimidazole-succinocarboxamide synthase	phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase)	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081 phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	InterProMatches:IPR001636; Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthesis (GO:0006164) phosphoribosylaminoimidazole succinocarboxamide synthetase	phosphoribosylaminoimidazole-succinocarboxamide synthase	PurC phosphoribosylaminoimidazole- succinocarboxamidesynthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	IPR001636: SAICAR synthetase phosphoribosylaminoimidazole-succinocarboxamide synthetase (SAICAR synthetase)	Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase	similar to Salmonella typhi CT18 phosphoribosylaminoimidazole-succinocarboxamide synthase phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	similar to BR0842, phosphoribosylaminoimidazole-succinocarboxamide synthase PurC, phosphoribosylaminoimidazole-succinocarboxamide synthase	Phosphoribosylaminoimidazole-succinocarboxamide synthase	
RICPR00211	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Residues 1 to 642 of 642 are 100 pct identical to residues 1 to 642 of a 642 aa protein from Escherichia coli K12 ref: NP_416234.1 threonine tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	ThrS	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl tRNA synthetase	conserved gene threonyl tRNA synthase	Threonyl tRNA synthetase	threonyl-tRNA synthetase	identified by similarity to SP:P00955; match to protein family HMM PF00587; match to protein family HMM PF02824; match to protein family HMM PF03129; match to protein family HMM TIGR00418 threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonine-tRNA ligase	Threonyl-tRNA synthetase	identified by similarity to SP:P18256; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00418 threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Threonyl-tRNA synthetase	Mb2646c, thrS, len: 692 aa. Equivalent to Rv2614c, len: 692 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 692 aa overlap). Probable thrS, threonyl-tRNA synthetase (Threonine--tRNA ligase) (EC 6.1.1.3), equivalent to O07151|SYT_MYCLE|THRS|ML0456|MLCL581.18c THREONYL-TRNA SYNTHETASE from Mycobacterium leprae (702 aa), FASTA scores: opt: 3988, E(): 0, (84.05% identity in 702 aa overlap). Also highly similar to others e.g. Q9L278|THRS from Streptomyces coelicolor (658 aa), FASTA scores: opt: 1982, E(): 5.1e-114, (65.1% identity in 659 aa overlap); P56881|SYT_THETH|THRS from Thermus aquaticus (subsp.  thermophilus) (659 aa), FASTA scores: opt: 1551, E(): 1.5e-87, (46.5% identity in 650 aa overlap); P00955|SYT_ECOLI from Escherichia coli (642 aa), FASTA scores: opt: 946, E(): 0, (40.7% identity in 612 aa overl ap); etc. Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2. BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. COFACTOR: BINDS 1 ZINC ION (BY SIMILARITY). PROBABLE THREONYL-TRNA SYNTHETASE THRS (THREONINE-TRNA SYNTHETASE)(ThrRS) (THREONINE-TRNA LIGASE)	threonyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark threonyl-tRNA synthetase	IPR002320: Threonyl-tRNA synthetase, class IIa; IPR006195: Aminoacyl-transfer RNA synthetase, class II threonine tRNA synthetase	Threonyl-tRNA synthetase	
RICPR00212	Uncharacterized protein RP222	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00213	Putative uncharacterized protein RP223	unknown	
RICPR00214	OUTER MEMBRANE PROTEIN TOLC	Outer membrane protein	Outer membrane protein	Similar to rp||tolC rc||tolC; Ortholog to ERGA_CDS_08150 Outer membrane protein tolC precursor	outer membrane protein TolC	Similar to Pseudomonas aeruginosa probable outer membrane lipoprotein precursor pa2525 or opmB SWALL:BAC24096 (EMBL:AE004680) (498 aa) fasta scores: E(): 3.5e-12, 25.22% id in 448 aa, and to Bacteroides thetaiotaomicron outer membrane efflux protein BT1212 SWALL:AAO76319 (EMBL:AE016931) (463 aa) fasta scores: E(): 3.1e-130, 80.08% id in 467 aa, and to Bacteroides thetaiotaomicron putative outer membrane efflux protein BT2498 SWALL:AAO77605 (EMBL:AE016936) (445 aa) fasta scores: E(): 1.1e-33, 31.8% id in 437 aa putative outer membrane lipoprotein precursor	Outer membrane efflux protein, putative	Putative outer membrane efflux protein	Outer membrane protein TolC	Similar to rp||tolC rc||tolC; Ortholog to ERWE_CDS_08250 Outer membrane protein tolC precursor	Outer membrane efflux protein	Type I secretion outer membrane protein, TolC	Type I secretion outer membrane protein, TolC family	Outer membrane efflux protein	COG1538: Outer membrane protein (TolC). Outer membrane efflux protein	Type I secretion outer membrane protein, TolC	Outer membrane efflux protein	outer membrane efflux protein identified by match to protein family HMM PF02321	Outer membrane efflux protein	Type I secretion outer membrane protein, TolC	Type I secretion outer membrane protein TolC	outer membrane efflux protein identified by match to protein family HMM PF02321	Type I secretion outer membrane protein, TolC	Type I secretion outer membrane protein	Outer membrane efflux protein	Type I secretion outer membrane protein, TolC	outer membrane protein TolC, putative COG1538 Outer membrane protein	TolC family protein outer membrane protein	type I secretion outer membrane protein, TolC family TIGRFAM: type I secretion outer membrane protein, TolC family PFAM: outer membrane efflux protein KEGG: rsp:RSP_0251 outer membrane efflux protein	
RICPR00215	Uncharacterized protein RP225	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00216	Putative uncharacterized protein RP226	Ankyrin repeat	Putative uncharacterized protein	Ankyrin repeat	Ankyrin repeat	Ankyrin repeat	hypothetical protein	Threonyl-tRNA synthetase	Putative uncharacterized protein	
RICPR00217	DNA topoisomerase 4 subunit B	Residues 1 to 606 of 606 are 99 pct identical to residues 25 to 630 of a 630 aa protein from Escherichia coli K12 ref: NP_417502.1 DNA topoisomerase IV subunit B	Topoisomerase IV subunit B	Probable dna topoisomerase iv (Subunit b) protein	Topoisomerase IV subunit B	Topoisomerase IV subunit B	conserved gene DNA topoisomerase IV subunit B	Topoisomerase IV subunit B	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF02518; match to protein family HMM TIGR01055 DNA topoisomerase IV, B subunit	Topoisomerase IV subunit B	Topoisomerase IV subunit B	DNA topoisomerase IV, B subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark topoisomerase IV subunit B	IPR000411: Topoisomerase IV, subunit B; IPR000565: DNA gyrase, subunit B; IPR001241: DNA topoisomerase II;IPR002288: DNA gyrase, subunit B, C-terminal;IPR003594: ATP-binding region, ATPase-like;IPR005737: Gram negative topoisomerase IV, subunit B DNA topoisomerase IV, subunit B	similar to Salmonella typhi CT18 topoisomerase IV subunit B topoisomerase IV subunit B	similar to BRA0591, DNA topoisomerase IV, B subunit ParE, DNA topoisomerase IV, B subunit	Topoisomerase IV subunit B	DNA gyrase subunit B	Topoisomerase IV subunit B	Topoisomerase IV subunit B	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme topoisomerase IV subunit B	DNA topoisomerase IV, B subunit	DNA gyrase/topo II; COG0187 topoisomerase B subunit	topoisomerase IV subunit B	Similar to: HI1528, PARE_HAEIN topoisomerase IV subunit B	DNA gyrase (topoisomerase II) B subunit GyrB protein	DNA topoisomerase IV, B subunit	Similar to Q87SJ3 (Q87SJ3) Topoisomerase IV,subunit B from Vibrio haemolyticus (626 aa). FASTA: opt: 2448 Z-score: 2700.3 E(): 1.6e-142 Smith-Waterman score: 2448; 56.709 identity in 626 aa overlap Topoisomerase IV, subunit B	DNA topoisomerase IV subunit B	
RICPR00218	TAIL-SPECIFIC PROTEASE	Carboxy-terminal processing protease ctpA	Carboxy-terminal processing protease	Carboxy-terminal processing protease	similar to carboxy-terminal protease family protein hypothetical protein	conserved gene carboxy-terminal protease	similar to carboxy-terminal protease family protein hypothetical protein	Carboxy-terminal processing proteinase	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 carboxyl-terminal protease	Carboxy-terminal processing protease	Carboxyl-terminal protease	Carboxy-terminal processing protease	Periplasmic protease	identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 carboxyl-terminal protease	C-terminal processing peptidase protein	InterProMatches:IPR004447; Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236) carboxy-terminal processing protease	carboxyl-terminal processing protease	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark carboxyl-terminal protease	Protease	similar to BR1837, carboxyl-terminal protease carboxyl-terminal protease	Carboxyl-terminal protease	Carboxy-terminal processing protease ctpA	CARBOXYL-TERMINAL PROTEASE	Putative carboxy-terminal processing protease	identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225 carboxypeptidase family protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative periplasmic carboxyl-terminal protease	Carboxyl-terminal protease	COG0793 periplasmic protease	Similar to Bartonella bacilliformis carboxy-terminal processing protease precursor CtpA SWALL:CTPA_BARBA (SWALL:Q44879) (434 aa) fasta scores: E(): 1.7e-33, 36.33% id in 355 aa, and to Bacteroides thetaiotaomicron carboxy-terminal processing protease precursor BT3035 SWALL:Q8A3B9 (EMBL:AE016938) (529 aa) fasta scores: E(): 9.8e-109, 80.14% id in 544 aa, and to Porphyromonas gingivalis W83 carboxyl-terminal protease PG0235 SWALL:AAQ65464 (EMBL:AE017172) (507 aa) fasta scores: E(): 1e-58, 48.84% id in 518 aa putative carboxy-terminal processing protease precursor	
RICPR00219	Sensor protein	Sensor protein	identified by similarity to SP:P23222; match to protein family HMM PF00989; match to protein family HMM PF02518 sensory box sensor histidine kinase	Histidine kinase sensor protein	Sensor protein	Periplasmic Sensor Signal Transduction Histidine Kinase	periplasmic sensor signal transduction histidine kinase	Histidine kinase sensor protein	sensor histidine kinase identified by match to protein family HMM PF00512; match to protein family HMM PF02518	two-component sensor histidine kinase	periplasmic sensor signal transduction histidine kinase	periplasmic sensor signal transduction histidine kinase	signal transduction histidine kinase identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518	multi-sensor signal transduction histidine kinase PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein KEGG: rpc:RPC_2870 multi-sensor signal transduction histidine kinase	Two-component system sensor histidine kinase	two-component sensor histidine kinase	Sensor protein	Putative two-component system sensor histidine kinase	periplasmic sensor signal transduction histidine kinase	Histidine kinase sensor protein	Histidine kinase sensor protein	Histidine kinase sensor protein	Histidine kinase sensor protein	Integral membrane sensor signal transduction histidine kinase precursor	sensory transduction protein kinase	Integral membrane sensor signal transduction histidine kinase precursor	Histidine kinase sensor protein	Sensor protein	Integral membrane sensor signal transduction histidine kinase	
RICPR00220	Putative uncharacterized protein RP230	Probable transmembrane protein	Putative uncharacterized protein	Predicted lipoprotein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative signal peptide	Uncharacterized conserved protein, contains TPR repeats	hypothetical protein	identified by similarity to OMNI:VC1834; match to protein family HMM PF00515; match to protein family HMM PF07719 TPR domain protein	contains a protein prenylyltransferase domain; ortholog to Escherichia coli bnum: b0742 putative periplasmic protein	TPR repeat	conserved hypothetical protein	unknown	TPR repeat protein	Putative uncharacterized protein	TPR repeat protein	conserved hypothetical protein containg TPR repeat	Tetratricopeptide TPR_2	unknown	uncharacterized protein conserved in bacteria COG1729	Hypothetical protein precursor	uncharacterized protein conserved in bacteria	TPR repeat	tol system periplasmic component	Tetratricopeptide TPR_2 repeat protein precursor	conserved hypothetical secreted protein Conserved hypothetical secreted protein. Homology to RS05116 of R.solanacearum of 38% (trembl|Q8Y1F3(SRS)) No domains predicted. No TMHs Has signal peptide. Conserved hypothetical protein	Hypothetical protein	hypothetical membrane associated protein	Tetratricopeptide TPR_2 repeat protein PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein SMART: Tetratricopeptide domain protein KEGG: vpa:VP1062 hypothetical protein	Putative TRANSMEMBRANE PROTEIN	
RICPR00221	Uncharacterized protein RP231	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00222	Uncharacterized protein RP232	Putative uncharacterized protein	conserved hypothetical protein similar to ZP_00210842.1 hypothetical protein	Putative lipoprotein	conserved hypothetical protein	Putative uncharacterized protein	identified by match to protein family HMM PF01011 PQQ enzyme repeat domain protein	identified by match to protein family HMM PF01011 PQQ enzyme repeat protein	identified by match to protein family HMM PF01011 PQQ enzyme repeat domain protein	quinoprotein	WD40-like repeat	Citation: PMID: 9670773, PMID: 11389935 COG 1520 Description: FOG: WD40-like repeat. CD:cd00216.1 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller. putative quinoprotein	Pyrrolo-quinoline quinone	Pyrrolo-quinoline quinone	Pyrrolo-quinoline quinone	Pyrrolo-quinoline quinone	WD40-like repeat	Pyrrolo-quinoline quinone SMART: Pyrrolo-quinoline quinone: (0.057) KEGG: sil:SPO2329 PQQ enzyme repeat family protein, ev=1e-149, 61% identity	Pyrrolo-quinoline quinone precursor	Pyrrolo-quinoline quinone precursor	Hypothetical protein	PQQ enzyme repeat family protein	PQQ enzyme repeat domain protein	Pyrrolo-quinoline quinone precursor	PQQ enzyme repeat domain protein	hypothetical protein COG1520 FOG: WD40-like repeat	WD40-like repeat	PQQ enzyme repeat domain protein	Pyrrolo-quinoline quinone PFAM: Pyrrolo-quinoline quinone KEGG: pae:PA3800 hypothetical protein	
RICPR00223	50S ribosomal protein L13	50S ribosomal protein l13	50S ribosomal protein L13	Residues 26 to 167 of 167 are 100 pct identical to residues 1 to 142 of a 142 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289799.1 50S ribosomal subunit protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50s ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal subunit protein L13	conserved gene 50S ribosomal protein L13	50S ribosomal subunit protein L13	50S ribosomal protein L13	identified by similarity to EGAD:9427; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	50S ribosomal protein L13	LSU ribosomal protein L13P	50S ribosomal protein L13	identified by similarity to SP:P02410; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S ribosomal protein L13	50S RIBOSOMAL PROTEIN L13	50S ribosomal protein L13	identified by similarity to SP:P02410; match to protein family HMM PF00572; match to protein family HMM TIGR01066 ribosomal protein L13	
RICPR00224	30S ribosomal protein S9	30S ribosomal protein s9	30S ribosomal protein S9	Residues 1 to 131 of 131 are 99 pct identical to residues 1 to 131 of a 131 aa protein from Escherichia coli K12 gi: 1789625 30S ribosomal subunit protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30s ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal subunit protein S9	conserved gene 30S ribosomal protein S9	30S ribosomal subunit protein S9	30S ribosomal protein S9	identified by match to protein family HMM PF00380 ribosomal protein S9	30S ribosomal protein S9	SSU ribosomal protein S9P	30S ribosomal protein S9	identified by similarity to SP:P02363; match to protein family HMM PF00380 ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S ribosomal protein S9	30S RIBOSOMAL PROTEIN S9	30S ribosomal protein S9	identified by similarity to SP:P02363; match to protein family HMM PF00380 ribosomal protein S9	
RICPR00225	RNA pyrophosphohydrolase	(Di)nucleoside polyphosphate hydrolase	Residues 1 to 176 of 176 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289382.1 putative invasion protein	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	Similar to probable (di)nucleoside polyphosphate hydrolase NudH hypothetical protein	conserved gene (di)nucleoside polyphosphate hydrolase	Similar to probable (di)nucleoside polyphosphate hydrolase NudH hypothetical protein	identified by match to protein family HMM PF00293 hydrolase, NUDIX family, NudH subfamily	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	identified by similarity to SP:Q46930; match to protein family HMM PF00293 (di)nucleoside polyphosphate hydrolase	Nucleoside polyphosphate hydrolase protein	RNA pyrophosphohydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark probable (di)nucleoside polyphosphate hydrolase	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	IPR000086: NUDIX hydrolase putative invasion protein; NTP pyrophosphohydrolase	MutT/Nudix family pyrophosphatase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	similar to BR1836, invasion protein A IalA, invasion protein A	RNA pyrophosphohydrolase	RNA pyrophosphohydrolase	Probable (di)nucleoside polyphosphate hydrolase	RNA pyrophosphohydrolase	MutT-like protein	
RICPR00226	Putative uncharacterized protein RP237	PleD-like response regulator containing 2 CheY-like receiver domains and a GGDEF domain	Similar to rp||RP237; Ortholog to ERGA_CDS_03230 Putative regulatory component of sensory transduction system	conserved family - putative response regulator containing a CheY-like receiver domain and a GGDEF domain hypothetical protein	two component response regulator	Similar to rp||RP237; Ortholog to ERWE_CDS_03280 Putative regulatory component of sensory transduction system	Regulatory components of sensory transduction system	two component diguanylate cyclase	GGDEF	two component diguanylate cyclase	Two component signal transduction response regulator	diguanylate cyclase	response regulator/GGDEF domain protein identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254	putative signaling/response regulator protein	diguanylate cyclase (GGDEF domain)	Regulatory components of sensory transduction system	Response regulator containing a CheY-like receiver domain and a GGDEF domain COG3706	diguanylate cyclase TIGRFAM: GGDEF domain: (1.1e-44) PFAM: GGDEF: (3.4e-58) response regulator receiver: (6.8e-11) KEGG: sil:SPO2753 diguanylate cyclase, putative/response regulator, ev=1e-115, 50% identity	diguanylate cyclase (GGDEF domain)	response regulator/GGDEF domain protein identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254	diguanylate cyclase	Diguanylate cyclase	Diguanylate cyclase	Response regulator receiver protein	response regulator receiver domain protein (CheY-like)	putative response regulator/diguanylate cyclase identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254	GGDEF domain	Response regulator containing a CheY-like receiver domain and a GGDEF domain	response regulator receiver modulated diguanylate cyclase TIGRFAM: diguanylate cyclase PFAM: GGDEF domain containing protein; response regulator receiver KEGG: jan:Jann_3131 diguanylate cyclase	
RICPR00227	Elongation factor P	Elongation factor p	Elongation factor P	Residues 1 to 271 of 271 are 99 pct identical to residues 5 to 275 of a 275 aa protein from Escherichia coli K12 ref: NP_416676.1 putative elongation factor	Elongation factor P-like protein	Elongation factor P	Elongation factor P	Elongation factor P	Elongation factor P	translation elongation factor	Elongation factor P	Similar to elongation factor P hypothetical protein	conserved gene translation elongation factor P (EF-P)	Similar to elongation factor P hypothetical protein	Elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	Elongation factor P	EF-P Translation Elongation Factor P	elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	Elongation factor P	translation elongation factor EF-P	Elongation factor P	Elongation factor P	Elongation factor P	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038 translation elongation factor P	Elongation factor P	Elongation factor P	Mb2563c, efp, len: 187 aa. Equivalent to Rv2534c, len: 187 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 187 aa overlap). Probable efp, elongation factor P, equivalent to Q9CCS0|EFP|ML0522 ELONGATION FACTOR P from Mycobacterium leprae (187 aa), FASTA scores: opt: 1158, E(): 2.1e-67, (94.1% identity in 186 aa overlap). Also highly similar to many e.g.  Q45288|EFP_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (187 aa), FASTA scores: opt: 843, E(): 3.4e-47, (69.5% identity in 187 aa overlap); Q9KXQ9|EFP from Streptomyces coelicolor (188 aa), FASTA scores: opt: 833, E(): 1.5e-46, (67.0% identity in 188 aa overlap); P49778|EFP_BACSU from Bacillus subtilis (185 aa), FASTA scores: opt: 607, E(): 4.6e-32, (47.8% identity in 182 aa overlap); P33398|EFP_ECOLI|B4147 from Escherichia coli strain K12 (187 aa), FASTA scores: opt: 503, E(): 1.8e-27, (42.3% identity in 182 aa overlap); etc. BELONGS TO THE ELONGATION FACTOR P FAMILY. PROBABLE ELONGATION FACTOR P EFP	
RICPR00228	EXTRAGENIC SUPPRESSOR PROTEIN SUHB	Residues 1 to 266 of 267 are 99 pct identical to residues 1 to 266 of a 267 aa protein from Escherichia coli O157:H7 ref: NP_311426.1 extragenic suppressor protein SuhB	Probable inositol monophosphatase	similar to inositol-1-monophosphatase hypothetical protein	conserved gene inositol-1-monophosphatase	similar to inositol-1-monophosphatase hypothetical protein	identified by similarity to SP:P22783; match to protein family HMM PF00459 inositol-1-monophosphatase, putative	Myo-inositol-1(Or 4)-monophosphatase protein	Probable fructose-1,6-bisphosphatase, inositol monophosphatase family	Extragenic suppressor protein suhb	Similar to sp|Q9A3D5|SUHB_CAUCR sp|Q92M71|SUHB_RHIME sp|Q98F59|SUHB_RHILO rc||suhB rp||suhB; Ortholog to ERGA_CDS_03200 Inositol-1-monophosphatase	COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of similar to NP_104922.1 extragenic suppressor protein	inositol monophosphatase; COG0483 fructose-1,6-bisphosphatase	Inositol-1-monophosphatase	extragenic suppressor protein suhB	Similar to sp|Q9A3D5|SUHB_CAUCR sp|Q92M71|SUHB_RHIME sp|Q98F59|SUHB_RHILO rc||suhB rp||suhB; Ortholog to ERWE_CDS_03250 Inositol-1-monophosphatase	ortholog to Escherichia coli bnum: b2533; MultiFun: Information transfer 2.2.2; Regulation 3.1.3.2 putative myo-inositol-1(or 4)-monophosphatase	Inositol-1(or 4)-monophosphatase	Inositol monophosphatase	Extragenic suppressor protein SuhB	Best Blastp Hit: pir||F81092 extragenic suppressor protein SuhB NMB1347 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226591|gb|AAF41721.1| (AE002483) extragenic suppressor protein SuhB [Neisseria meningitidis MC58] COG0483 Inositol phosphatase family proteins putative extragenic suppressor protein	inositol monophosphatase	enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action; Code: G; COG: COG0483 SuhB	inositol monophosphatase family protei	MYO-INOSITOL 1-PHOSPHATE + H(2)O = MYO- INOSITOL + PHOSPHATE. Cofactor: magnesium (predicted) Inositol monophosphatase family protein	enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action; Code: G; COG: COG0483 SuhB	Inositol-1(Or 4)-monophosphatase	Inositol-1(or 4)-monophosphatase	
RICPR00229	Uncharacterized protein RP240	Similar to sp|Q92IU6|Y324_RICCN sp|Q9ZDT5|Y240_RICPR; Ortholog to ERGA_CDS_03310 Conserved hypothetical protein	conserved hypothetical protein similar to ZP_00210650.1 hypothetical protein	Similar to sp|Q92IU6|Y324_RICCN sp|Q9ZDT5|Y240_RICPR; Ortholog to ERWE_CDS_03350 Conserved hypothetical protein	unknown	conserved hypothetical protein	conserved hypothetical protein identified by similarity to GB:AAS14408.1	unknown	conserved hypothetical protein identified by similarity to GB:AAS14408.1	conserved hypothetical protein identified by similarity to GB:AAS14408.1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Elongation factor P	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00230	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	identified by match to protein family HMM PF02666; match to protein family HMM TIGR00164 phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme protein	Phosphatidylserine decarboxylase proenzyme	Mb0445c, psd, len: 231 aa. Equivalent to Rv0437c, len: 231 aa (start uncertain), from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 231 aa overlap). Possible psd, phosphatidylserine decarboxylase (EC 4.1.1.65), equivalent to CAC29819.1|AL583918 conserved hypothetical protein from Mycobacterium leprae (243 aa); and highly similar to MLCB1450.11|T44729|4154044|CAA22695.1|AL035159 hypothetical protein from Mycobacterium leprae (202 aa), FASTA score: (74.6% identity in 197 aa overlap). Also similar to other phosphatidylserine decarboxylases e.g.  NP_108058.1|14027249|BAB54203.1|AP003012 phosphatidylserine decarboxylase from Mesorhizobium loti (232 aa); AAK86872|g15156090|AGR_C_1963 phosphatidylserine decarboxylase from Agrobacterium tumefaciens (244 aa); AAG12422.1|AY005137|Psd phosphatidylserine decarboxylase from Chlorobium tepidum (216 aa); etc. POSSIBLE PHOSPHATIDYLSERINE DECARBOXYLASE PSD (PS DECARBOXYLASE)	Phosphatidylserine decarboxylase	similar to BR0443, phosphatidylserine decarboxylase-related protein phosphatidylserine decarboxylase-related protein	Phosphatidylserine decarboxylase proenzyme	Putative membrane protein	Similar to rc||psd rp||RP241; Ortholog to ERGA_CDS_03170 Phosphatidylserine decarboxylase	COG0688 Psd phosphatidylserine decarboxylase similar to NP_359962.1; go_process: 0008654 phosphatidylserine decarboxylase proenzyme	COG0688 phosphatidylserine decarboxylase	Similar to Rhizobium meliloti phosphatidylserine decarboxylase proenzyme Psd or r01121 or SMC00551 SWALL:Q9FDI9 (EMBL:AF247564) (232 aa) fasta scores: E(): 1.2e-19, 35.74% id in 221 aa, and to Bacteroides thetaiotaomicron phosphatidylserine decarboxylase proenzyme Psd or BT2231 SWALL:AAO77338 (EMBL:AE016935) (228 aa) fasta scores: E(): 4.3e-82, 88.15% id in 228 aa, and to Brucella suis phosphatidylserine decarboxylase proenzyme Psd or Br0443 SWALL:Q8G285 (EMBL:AE014354) (232 aa) fasta scores: E(): 1.1e-23, 39.72% id in 219 aa putative phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase proenzyme	Phosphatidylserine decarboxylase	phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase	Similar to rc||psd rp||RP241; Ortholog to ERWE_CDS_03220 Phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase-related protein	Phosphatidylserine decarboxylase-related protein	Phosphatidylserine decarboxylase	Best Blastp Hit: gb|AAA84884.1| (U34760) unknown [Neisseria gonorrhoeae] COG0688 Phosphatidylserine decarboxylase; Psd putative phosphatidylserine decarboxylase	Phosphatidylserine decarboxylase-related protein	phosphatidylserine decarboxylase (EC 4.1.1.65)	Phosphatidylserine decarboxylase-related protein	Phosphatidylserine decarboxylase-related:Phosphatidylserine decarboxylase-related protein	
RICPR00231	CDP-DIACYLGLYCEROL--SERINE O- PHOSPHATIDYLTRANSFERASE	CDP-diacylglycerol-serine-O- phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	Phosphatidyltransferase	identified by similarity to SP:Q48269; match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	PssA	CDP-diacylglycerol--serine O- phosphatidyltransferase	CDP-diacylglycerol--serine O- phosphatidyltransferase	Mb0444c, pssA, len: 286 aa. Equivalent to Rv0436c, len: 286 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 286 aa overlap). Probable pssA, PS synthase (CDP-diacylglycerol--serine O-phosphatidyltransferase) (EC 2.7.8.8) (see citation below), integral membrane protein, equivalent to AL035159|MLCB1450_9|T44730 from Mycobacterium leprae (300 aa), FASTA scores: opt: 1506, E(): 0, (77.9% identity in 285 aa overlap). Also highly similar to others e.g.  NP_108059.1|14027250|BAB54204.1|AP003012 phosphatidylserine synthase from Mesorhizobium loti (248 aa); PSS_BACSU|P39823 cdp-diacylglycerol--serine o-phosphatidyltransferase from Bacillus subtilis (177 aa), FASTA scores: opt: 277, E(): 9.9e-12, (33.3% identity in 183 aa overlap); etc. Contains PS00379 CDP-alcohol phosphatidyltransferases signature. BELONGS TO THE CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE CLASS-I FAMILY. PROBABLE CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE PSSA (PS SYNTHASE) (PHOSPHATIDYLSERINE SYNTHASE)	Phosphatidylserine synthase	Similar to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.1e-13, 31.27% id in 259 aa, and to Bacteroides thetaiotaomicron CDPp-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:Q8A5K7 (EMBL:AE016935) (235 aa) fasta scores: E(): 5.8e-10, 28.01% id in 257 aa putative phospholipid biosynthesis-related membrane protein	similar to BR0444, CDP-diacylglycerol--serine O-phosphatidyltransferase PssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	Phosphatidylserine synthase	Phosphatidylserine synthase	Similar to rc||pssA rp||pssA sp|Q9ZBM2|PSS_MYCLE sp|P96282|PSS_MYCTU; Ortholog to ERGA_CDS_03160 CDP-diacylglycerol--serine O-phosphatidyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme phosphatidylserine synthase	COG1183 PssA phosphatidylserine synthase; go_process: 0008654 CDP-diacylglycerol--serine O-phosphatidyltransferase	COG1183 phosphatidylserine synthase	Similar to Rhizobium loti phosphatidylserine synthase MLR7822 SWALL:Q984V9 (EMBL:AP003012) (248 aa) fasta scores: E(): 1.5e-12, 34.17% id in 237 aa, and to Bacteroides thetaiotaomicron CDP-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:AAO77339 (EMBL:AE016935) (235 aa) fasta scores: E(): 2.6e-68, 72.57% id in 237 aa, and to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.2e-14, 31.33% id in 233 aa putative phosphatidylserine synthase	CDP-diacylglycerol--serine O- phosphatidyltransferase	Similar to Q8EBE8 CDP-diacylglycerol--serine O-phosphatidyltransferase from Shewanella oneidensis (269 aa). FASTA: opt: 456 Z-score: 550.1 E(): 9.5e-23 Smith-Waterman score: 564; 37.209 identity in 258 aa overlap. ORF ftt0835 CDP-alcohol phosphatidyltransferase	Phosphatidylserine synthase	phosphatidylserine synthase	Phosphatidyserine synthase	phosphatidylserine synthase	CDP-diacylglycerol--serine O-phosphatidyltransferase	Similar to rc||pssA rp||pssA sp|Q9ZBM2|PSS_MYCLE sp|P96282|PSS_MYCTU; Ortholog to ERWE_CDS_03210 CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 CDP-diacylglycerol--serine O-phosphatidyltransferase	
RICPR00232	MULTIDRUG RESISTANCE PROTEIN A	probable RND efflux membrane fusion protein hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark multidrug resistance efflux pump	similar to BRA0472, HlyD family secretion protein HlyD family secretion protein	Multidrug resistance efflux pump	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pt : putative transporter putative multidrug resistance efflux pump	HlyD family secretion protein	multidrug resistance protein A	multidrug resistance efflux pump	Multidrug resistance protein A	Multidrug resistance efflux pump	identified by match to protein family HMM PF00529 HlyD family secretion protein	Multidrug resistance protein A	Gram-negative bacterial RTX secretion protein D:Secretion protein HlyD	Multidrug resistance protein A	Multidrug resistance efflux pump COG1566	Secretion protein HlyD	membrane fusion protein	HlyD family secretion protein identified by match to protein family HMM PF00529	Multidrug resistance protein A	multidrug resistance efflux pump identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	secretion protein HlyD	Secretion protein HlyD	MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily	Multidrug resistance protein A	putative HlyD family secretion protein Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type m : membrane component	secretion protein HlyD	Putative Multidrug resistance protein (HlyD family), emrA-like	Efflux transporter, RND family, MFP subunit precursor	
RICPR00233	Uncharacterized protein RP244	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00234	BOLA PROTEIN HOMOLOG	BolA protein	BolA-like protein	BolA protein	BolA-like protein	Activator of morphogenic pathway (BolA family), important in general stress response	BolA protein	BolA protein	Stress-induced morphogen BolA protein homolog	Code: T; COG: COG0271 possible regulator of murein genes	Code: T; COG: COG0271 possible regulator of murein genes	BolA-like protein	BolA-like protein	Code: T; COG: COG0271 possible regulator of murein genes	BolA protein	BolA protein	BolA transcriptional regulator	BolA protein	BolA protein identified by match to protein family HMM PF01722	BolA family protein PFAM: BolA family protein KEGG: rpc:RPC_0535 BolA-like protein	BolA family protein PFAM: BolA family protein KEGG: neu:NE0913 BolA-like protein	BolA protein	BolA protein	regulator of penicillin binding proteins and beta lactamase transcription	BolA-like putative stress-induced morphogen	putative cell division protein BolA KEGG: ppr:PBPRA0820 putative cell division protein BolA	Putative uncharacterized protein	Putative uncharacterized protein	BolA-like protein	
RICPR00235	Putative uncharacterized protein RP246	Probable signal transduction protein eal-ggdef domains	Putative uncharacterized protein	hypothetical protein	conserved hypothetical protein	identified by similarity to OMNI:NTL03PA01728; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 GGDEF/EAL domain protein	DUF2 is a conserved domain of unknown function DUF2-containing protein	EAL domain protein identified by match to protein family HMM PF00563	Diguanylate cyclase/phosphodiesterase	Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation	EAL domain containing protein	FOG: EAL domain COG2200	putative signal transduction protein	putative diguanylate phosphodiesterase (EAL domain)	putative diguanylate cyclase identified by similarity to GB:AAC61683.1; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254	Diguanylate cyclase/phosphodiesterase	nitrogen fixation positive activator, putative identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254	Signal transduction protein cytoplasmic protein	diguanylate cyclase/phosphodiesterase TIGRFAM: diguanylate cyclase PFAM: GGDEF domain containing protein; EAL domain protein KEGG: sma:SAV2747 phosphodiesterase	putative signaling protein	sensory box/GGDEF family protein	Signal transduction response regulator	Hypothetical signaling protein	Putative uncharacterized protein	EAL domain containing protein	EAL domain containing protein	Putative uncharacterized protein	sensory box/GGDEF family protein	Phosphatidylserine decarboxylase	
RICPR00236	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate-alanine ligase	Residues 1 to 491 of 491 are 99 pct identical to residues 1 to 491 of a 491 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285787.1 UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	conserved gene UDP-N-acetylmuramate:L-alanine ligase MurC	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate-alanine ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082 UDP-N-acetylmuramate--alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--alanine ligase protein	UDP-N-acetylmuramate--L-alanine ligase	Mb2176c, murC, len: 494 aa. Equivalent to Rv2152c, len: 494 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 494 aa overlap). Probable murC, UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8). FASTA best: MURC_ECOLI P17952 (491 aa) opt: 764, E(): 0; (36.9% identity in 474 aa overlap) UDP-N-acetylmuramate-alanine ligase MurC	InterProMatches:IPR005758; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763), Biological Process: cell wall biosynthesis (sensu Bacteria) (GO:0009273) UDP-N-acetyl muramate-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	UDP-N-acetylmuramate--L-alanine ligase	
RICPR00237	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	Residues 1 to 342 of 342 are 99 pct identical to residues 1 to 342 of a 342 aa protein from Escherichia coli gb: AAA24185.1 UDP-N-acetylpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	conserved gene UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by match to protein family HMM PF01565; match to protein family HMM PF02215; match to protein family HMM PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by similarity to SP:P18579; match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by similarity to SP:Q9ZJJ4; match to protein family HMM PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase protein	InterProMatches:IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	MurB COG0812 UDP-N-acetylmuramate dehydrogenase udp-n-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	UDP-N-acetylenolpyruvoylglucosamine reductase	
RICPR00238	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	Residues 1 to 306 of 306 are 99 pct identical to residues 1 to 306 of a 306 aa protein from Escherichia coli K12 ref: NP_414634.1 D-alanine-D-alanine ligase B, affects cell division	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205 D-alanine--D-alanine ligase	D-alanine-D-alanine ligase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark D-alanine-D-alanine ligase B	IPR000291: D-alanine--D-alanine ligase/VANA/B/C D-alanine-D-alanine ligase B, affects cell division	D-alanine-D-alanine ligase	similar to Salmonella typhi CT18 D-alanine:D-alanine ligase B D-alanine:D-alanine ligase B	D-alanine--D-alanine ligase	similar to BR1428, D-alanine--D-alanine ligase B DdlB, D-alanine--D-alanine ligase B	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	D-alanine--D-alanine ligase B	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme D-alanine-D-alanine ligase B	COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes D-alanine--D-alanine ligase	D-alanine--D-alanine ligase	COG1181 D-alanyl-D-alanine ligase	D-alanylalanine synthetase; D-Ala-D-Ala ligase; Similar to: HI1140, DDL_HAEIN D-alanine--D-alanine ligase	Similar to Enterococcus faecalis VanE SWALL:Q93A46 (EMBL:AF430807) (352 aa) fasta scores: E(): 3.3e-28, 31.85% id in 339 aa, and to Bacteroides thetaiotaomicron D-Alanine--D-Alanine ligase BT3713 SWALL:AAO78818 (EMBL:AE016941) (324 aa) fasta scores: E(): 8.6e-113, 88.58% id in 324 aa, and to Neurospora crassa hypothetical protein B19a17.060 SWALL:CAD70534 (EMBL:BX284763) (346 aa) fasta scores: E(): 5.6e-42, 42.51% id in 334 aa putative D-Alanine-D-Alanine-Ligase	D-alanine--D-alanine ligase B	affects cell division D-alanine-D-alanine ligase B	Similar to Escherichia coli, and Escherichia coli O157:H7 D-alanine--D-alanine ligase A DdlA or b0381 or z0477 or ecs0431 SWALL:DDLA_ECOLI (SWALL:P23844) (364 aa) fasta scores: E(): 5.1e-32, 32.86% id in 353 aa D-alanine--D-alanine ligase A	D-alanine--D-alanine ligase B	D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR NE0994	D-alanine--D-alanine ligase	
RICPR00239	Cell division protein ftsQ homolog	Cell division septal protein	similar to BR1427, cell division protein FtsQ, hypothetical hypothetical cell division protein FtsQ	Cell division protein ftsQ	Similar to sp|Q9ZDS5|FTSQ_RICPR; Ortholog to ERGA_CDS_06850 Cell division protein ftsQ homolog	COG1589 FtsQ cell division septal protein cell division protein	COG1589 cell division protein	Similar to sp|Q9ZDS5|FTSQ_RICPR; Ortholog to ERWE_CDS_06940 Cell division protein ftsQ homolog	Cell division protein FtsQ	Cell division protein FtsQ	Actin-binding, actinin-type:Cell division protein FtsQ	Membrane bound (predicted). Named divIB (possible homologue) in B. subtilis. Gene in the dcw cluster.  Citation: Errington et al. Cytokinesis in bacteria. 2003.  Microbiol. Mol. Biol. Rev. 67: 52-65. cell division septal protein FtsQ	Cell division protein FtsQ	cell division protein FtsQ	cell division protein FtsQ	Cell division protein ftsQ	putative cell division protein FtsQ Codons 110 to 290 are similar to codons 80 to 270 of Escherichia coli cell division protein FtsQ.  UniProt:FTSQ_ECOLI (EMBL:ECAPAH02) (276 aa), and to entire protein of Agrobacterium tumefaciens (strain C58/ATCC 33970) FtsQ cell division protein (agr_c_3786p).  UniProt:Q8UDN4_AGRT5 (EMBL:AE008125) (310 aa) similarity:fasta; with=UniProt:FTSQ_ECOLI (EMBL:ECAPAH02); Escherichia coli.; ftsQ; Cell division protein ftsQ.; length=276; id 25.258; 194 aa overlap; query 109-290; subject 81-268 similarity:fasta; with=UniProt:Q8UDN4_AGRT5 (EMBL:AE008125); Agrobacterium tumefaciens (strain C58/ATCC 33970).; ftsQ; Cell division protein (AGR_C_3786p).; length=310; id 68.990; 287 aa overlap; query 20-306; subject 23-309	cell division protein FtsQ PFAM: cell division protein FtsQ: (3.2e-10) KEGG: sil:SPO1202 cell division protein FtsQ, ev=1e-102, 64% identity	cell division protein FtsQ identified by match to protein family HMM PF03799	cell division protein similar to ftsQ (SMc01872) [Sinorhizobium meliloti] Similar to entrez-protein:O30993 Putative location:bacterial inner membrane Psort-Score: 0.1001; go_component: integral to membrane [goid 0016021]; go_component: inner membrane [goid 0019866]; go_process: barrier septum formation [goid 0000917]; go_process: cytokinesis [goid 0000910]	Cell division protein FtsQ	Cell division protein ftsQ	Cell division protein FtsQ	putative cell division protein FtsQ identified by similarity to SP:P06136; match to protein family HMM PF03799	cell division protein COG1589 Cell division septal protein	Cell division septal protein	cell division protein FtsQ, putative	Cell division protein FtsQ	cell division protein FtsQ PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type KEGG: rsp:RSP_2112 cell division septal protein FtsQ	
RICPR00240	CELL DIVISION PROTEIN FTSA	Cell division protein ftsA	FtsA	Residues 1 to 420 of 420 are 100 pct identical to residues 1 to 420 of a 420 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285790.1 ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes	Cell division protein FtsA	Cell division protein FtsA	Cell division protein ftsA	FtsA protein	Probable cell division protein ftsa	Cell division protein	ATP-binding cell division protein FtsA	conserved gene cell division protein FtsA	ATP-binding cell division protein FtsA	Cell division protein FtsA	identified by similarity to SP:O07325; match to protein family HMM PF02491; match to protein family HMM TIGR01174 cell division protein FtsA	Cell division protein ftsA	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 cell division protein FtsA	Cell division protein ftsA	cell division protein	Cell division protein	Cell division protein ftsA	identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 cell division protein FtsA	Cell division protein	InterProMatches:IPR003494; required for septum formation during sporulation, Biological Process: cell cycle (GO:0007049) cell-division protein	septum formation cell division initiation protein FtsA	Cell division protein FtsA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cell division protein	FtsA cell division protein	Cell division protein FtsA	
RICPR00241	Uncharacterized protein RP252	Membrane protein Implicated in regulation of membrane protease activity	Putative uncharacterized protein	Membrane protein implicated in regulation of membrane protease activity	Membrane protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00242	Cytochrome c homolog	identified by similarity to SP:P54820; match to protein family HMM PF00034 cytochrome c552	Cytochrome c2	similar to BR0039, cytochrome c, membrane-bound cytochrome c, membrane-bound	Putative uncharacterized protein	Similar to rp||cycM rc||cycM sp|P30323|CYCM_BRAJA; Ortholog to ERGA_CDS_06970 Cytochrome c homolog	COG3303 NrfA formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit cytochrome C	cytochrome C	Similar to rp||cycM rc||cycM sp|P30323|CYCM_BRAJA; Ortholog to ERWE_CDS_07050 Cytochrome c homolog	Cytochrome c	Cytochrome c, class I	Cytochrome c heme-binding site:Cytochrome c, class IA/ IB:Cytochrome c, class I:Cytochrome c, class IC	Citation: H Myllykallio et al (1999) Proc. Natl.  Acad. Sci. USA 96, 4348-4353 Cytochrome cy is a membrane-bound isozyme of cytochrome c2 Cytochrome cy	cytochrome c, class I	cytochrome c identified by similarity to SP:P30323; match to protein family HMM PF00034	cytochrome c, class I	Cytochrome c	cytochrome C, membrane-bound identified by similarity to SP:P30323; match to protein family HMM PF00034	cytochrome-c protein similar to cycM (Atu0101) [Agrobacterium tumefaciens str. C58], SMc02897 [Sinorhizobium meliloti]and mll5495 [Mesorhizobium loti] Similar to swissprot:Q8UJ37 Putative location:bacterial periplasmic space Psort-Score: 0.9303; go_component: mitochondrial electron transport chain [goid 0005746]; go_function: electron transporter activity [goid 0005489]; go_process: electron transport [goid 0006118]	Cytochrome c, class I	Cytochrome c, class I precursor	cytochrome C, membrane-bound identified by similarity to SP:P30323; match to protein family HMM PF00034	cytochrome c, class I	Cytochrome c family protein	cytochrome c, class I PFAM: cytochrome c, class I KEGG: sil:SPO3538 cytochrome c552	cytochrome c552	cytochrome c, class I PFAM: cytochrome c, class I KEGG: rpc:RPC_3730 cytochrome c, class I	Cytochrome c family protein	cytochrome c, class I PFAM: cytochrome c, class I KEGG: rsp:RSP_0705 cytochrome cy	
RICPR00243	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Residues 1 to 305 of 305 are 100 pct identical to residues 1 to 305 of a 305 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285792.1 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	conserved gene UDP-3-O-acyl-N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-acyl-N-acetylglucosamine deacetylase	identified by similarity to SP:P07652; match to protein family HMM PF03331; match to protein family HMM TIGR00325 UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-acyl N-acetylglucosamine deacetylase	similar to Salmonella typhi CT18 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	Similar to Chlamydia pneumoniae udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC or cpn0652 or cp0095 SWALL:LPXC_CHLPN (SWALL:Q9Z7Q2) (282 aa) fasta scores: E(): 2.3e-91, 78.64% id in 281 aa, and to Escherichia coli, and Escherichia coli O157:H7 udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC or EnvA or AsmB SWALL:LPXC_ECOLI (SWALL:P07652) (305 aa) fasta scores: E(): 1.9e-29, 35.74% id in 277 aa putative udp-3-o-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	similar to BR1424, UDP-3-0-acyl N-acetylglucosamine deacetylase LpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl ] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	
RICPR00244	Uncharacterized protein RP255	Major facilitator superfamily MFS_1	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Predicted transporter protein	Putative uncharacterized protein	
RICPR00245	RIBONUCLEASE E	Ribonuclease E	conserved gene ribonuclease E	Ribonuclease E	ribonuclease G	Ribonuclease E	Ribonucleases G and E	similar to BR0912, ribonuclease, Rne/Rng domain protein ribonuclease, Rne/Rng domain protein	Ribonuclease E	Similar to rc||rne sp|P45175|RNG_HAEIN; Ortholog to ERGA_CDS_05680 Ribonuclease E	COG1530 CafA ribonucleases G and E similar to NP_220641.1; go_function: 0003723 ribonuclease E	Ribonuclease E	rne/rng ribonuclease E/G	Ribonuclease G and E	Similar to rc||rne sp|P45175|RNG_HAEIN; Ortholog to ERWE_CDS_05780 Ribonuclease E	Ribonuclease E	Ribonuclease E and G	Ribonuclease E and G	Ribonuclease E and G	ribonuclease, Rne/Rng family	ribonuclease, Rne/Rng family identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757	ribonuclease, Rne/Rng family subfamily identified by match to protein family HMM TIGR00757	Ribonuclease E	ribonuclease, Rne/Rng family identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757	Ribonuclease, Rne/Rng family	Ribonucleases G and E	ribonuclease, Rne/Rng family	ribonuclease, Rne/Rng family identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757	ribonuclease E	
RICPR00246	Heme A synthase	Cytochrome c oxidase assembly protein	Cytochrome oxidase assembly protein	Heme A synthase	Heme A synthase	Putative heme o oxygenase (Cytochrome aa3- controlling) transmembrane protein	similar to conserved hypothetical proteins, hypothetical cytochrome oxidase assembly protein hypothetical protein	conserved gene cytochrome c oxidase assembly protein	similar to conserved hypothetical proteins, hypothetical cytochrome oxidase assembly protein hypothetical protein	identified by match to protein family HMM PF02628 cytochrome oxidase assembly protein	identified by match to protein family HMM PF02628 cytochrome c oxidase assembly protein	Heme synthase	Cytochrome-c oxidase protein	Uncharacterized protein required for cytochrome oxidase assembly	similar to BR0787, cytochrome c oxidase assembly protein, hypothetical cytochrome c oxidase assembly protein, hypothetical	Heme A synthase	hypothetical protein, similar to heme synthase	Ortholog of S. aureus MRSA252 (BX571856) SAR1089 putative heme A synthase	hypothetical protein, similar to heme synthase	Similar to rc||coxW rp||coxW sp|P40086|COXW_YEAST; Ortholog to ERGA_CDS_07310 Cytochrome C oxidase assembly protein	identified by match to protein family HMM PF02628 cytochrome oxidase assembly protein	COG3175 COX11 cytochrome oxidase assembly factor cytochrome C oxidase assembly protein	CHR28_tmp.0230, predicted protein, len = 416 aa, probably cytochrome oxidase assembly protein; predicted pI = 10.5836; good similarity to several cytochrome oxidase assembly protein; contains a cytochrome oxidase assembly protein domain cytochrome oxidase assembly protein-like protein	Membrane protein, putative	go_component: mitochondrial inner membrane [goid 0005743]; go_process: heme a biosynthesis [goid 0006784]; go_process: cytochrome c oxidase biogenesis [goid 0008535] cytochrome c oxidase assembly protein cox15	identified by match to protein family HMM PF02628 cytochrome oxidase assembly protein	similar to BA483f11.2.1 cox15 (yeast) cytochrome c oxidase assembly protein (isoform 1)	cytochrome-c oxidase (cytochrome aa3 controlling protein)	
RICPR00247	Ribosomal large subunit pseudouridine synthase C	Pseudouridine synthase	Residues 1 to 319 of 319 are 100 pct identical to residues 1 to 319 of a 319 aa protein from Escherichia coli K12 ref: NP_415604.1 orf, conserved hypothetical protein	Ribosomal large subunit pseudouridine synthase C	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	identified by similarity to SP:P23851 ribosomal large subunit pseudouridine synthase C	Pseudouridine synthase	RNA pseudouridylate synthase	Pseudouridine synthase	Molecular Function: pseudouridylate synthase activity (GO:0004730) Pseudouridine synthase	Pseudouridine synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark pseudouridylate synthase	IPR002942: RNA-binding S4; IPR006224: Pseudouridine synthase, Rlu 23S rRNA pseudouridylate synthase	Pseudouridylate synthases, 23S RNA-specific	similar to Salmonella typhi CT18 ribosomal large subunit pseudouridine synthase C ribosomal large subunit pseudouridine synthase C	Pseudouridine synthase	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase C	Hypothetical protein	Similar to sp|Q9ZDR7|RLUC_RICPR sp|Q92IS6|RLUC_RICCN; Ortholog to ERGA_CDS_03220 Ribosomal large subunit pseudouridine synthase C	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 23S rRNA pseudouridylate synthase	COG0564 RluA pseudouridylate synthases, 23S RNA-specific ribosomal large subunit pseudouridine synthase	Pseudouridine synthase	23S RNA-specific; COG0564 pseudouridylate synthase	ribosomal large subunit pseudouridine synthase C	pseudouridylate synthase; Uracil hydrolyase; Similar to: HI0412, RLUC_HAEIN ribosomal large subunit pseudouridine synthase C	
RICPR00248	PENICILLIN-BINDING PROTEIN 4*	similar to D-alanyl-D-alanine carboxypeptidase hypothetical protein	conserved gene serine-type D-Ala-D-Ala carboxypeptidase	similar to D-alanyl-D-alanine carboxypeptidase hypothetical protein	penicillin-binding protein 4	penicillin-binding protein	similar to Salmonella typhi CT18 penicillin-binding protein AmpH penicillin-binding protein AmpH	beta-lactamase family protein	Penicillin-binding protein	Penicillin-binding protein 4*	Code: V; COG: COG1680 putative enzyme	Code: V; COG: COG1680 putative enzyme	Penicillin-binding protein 4*	Beta-lactamase class C and other penicillin binding protein COG1680	Code: V; COG: COG1680 putative enzyme	Beta-lactamase	Beta-lactamase precursor	Beta-lactamase	hypothetical protein similarity to COG1680 Beta-lactamase class C and other penicillin binding proteins(Evalue: 1E-63)	Serine-type D-Ala-D-Ala carboxypeptidase precursor	Beta-lactamase precursor	Penicillin-binding protein AmpH	beta-lactamase PFAM: beta-lactamase KEGG: mxa:MXAN_2136 beta-lactamase	Serine-type D-Ala-D-Ala carboxypeptidase PFAM: beta-lactamase KEGG: sma:SAV2663 beta-lactamase	Serine-type D-Ala-D-Ala carboxypeptidase PFAM: beta-lactamase KEGG: bur:Bcep18194_C7182 serine-type D-Ala-D-Ala carboxypeptidase	Serine-type D-Ala-D-Ala carboxypeptidase PFAM: beta-lactamase KEGG: mmc:Mmcs_4094 serine-type D-Ala-D-Ala carboxypeptidase	Beta-lactamase class C	putative enzyme Code: V; COG: COG1680	
RICPR00249	EXODEOXYRIBONUCLEASE III	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633 exodeoxyribonuclease III, putative	Exodeoxyribonuclease III	similar to BR2004, exodeoxyribonuclease III Xth-2, exodeoxyribonuclease III	Exodeoxyribonuclease III	COG0708 exonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease III	exodeoxyribonuclease III xth	AP endonuclease, family 1:Exodeoxyribonuclease III xth:Endonuclease/exonuclease/phosphatase family	Exodeoxyribonuclease III	Exodeoxyribonuclease III	exodeoxyribonuclease III	exodeoxyribonuclease III (xth)	Exodeoxyribonuclease III	putative exodeoxyribonuclease III similarity:fasta; with=UniProt:EX3_ECOLI (EMBL:ECXTH); Escherichia coli.; xthA; Exodeoxyribonuclease III (EC 3.1.11.2) (Exonuclease III) (EXO III) (AP endonuclease VI).; length=268; id 32.353; 272 aa overlap; query 7-265; subject 5-266 similarity:fasta; with=UniProt:Q8UBT9_AGRT5 (EMBL:AE008190); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Exodeoxyribonuclease III (AGR_C_5007p).; length=267; id 81.273; 267 aa overlap; query 1-267; subject 1-267	Exodeoxyribonuclease III xth	exodeoxyribonuclease III TIGRFAM: exodeoxyribonuclease III: (1.5e-45) exodeoxyribonuclease III (xth): (5.2e-45) PFAM: Endonuclease/exonuclease/phosphatase: (1.8e-39) KEGG: sil:SPO3425 exodeoxyribonuclease III, putative, ev=1e-130, 82% identity	exodeoxyribonuclease III (xth)	exodeoxyribonuclease III protein similar to xthA3 (SMc03818) [Sinorhizobium meliloti] Similar to swissprot:Q92L80 Putative location:bacterial cytoplasm Psort-Score: 0.1665; go_function: hydrolase activity [goid 0016787]; go_function: endonuclease activity [goid 0004519]; go_function: nuclease activity [goid 0004518]; go_function: exodeoxyribonuclease III activity [goid 0008853]; go_process: DNA repair [goid 0006281]	exodeoxyribonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease III	exodeoxyribonuclease III	Putative exodeoxyribonuclease III	Exonuclease III	exodeoxyribonuclease III, putative	exodeoxyribonuclease III Xth TIGRFAM: exodeoxyribonuclease III Xth PFAM: Endonuclease/exonuclease/phosphatase KEGG: rpc:RPC_0278 exodeoxyribonuclease III (xth)	Exodeoxyribonuclease III	
RICPR00250	Pyruvate dehydrogenase E1 component subunit alpha	Pyruvate Dehydrogenase Alpha	identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676 pyruvate dehydrogenase complex, E1 component, alpha subunit	Pyruvate dehydrogenase alpha subunit protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark pyruvate dehydrogenase E1 alpha subunit	Similar to the N-terminal alpha subunits of: Rhizobium meliloti pyruvate dehydrogenase E1 component, alpha subunit PdhA SWALL:ODPA_RHIME (SWALL:Q9R9N5) (348 aa) fasta scores: E(): 9e-38, 40.13% id in 304 aa and Rickettsia sibirica pyruvate dehydrogenase E1 component alpha subunit SWALL:EAA25604 (EMBL:AABW01000001) (326 aa) fasta scores: E(): 1.3e-39, 39.81% id in 319 aa pyruvate dehydrogenase e1 component, alpha subunit	similar to BR1129, pyruvate dehydrogenase complex, E1 component, alpha subunit PdhA, pyruvate dehydrogenase complex, E1 component, alpha subunit	Pyruvate dehydrogenase E1 component, alpha subunit	Similar to sp|Q9ZDR4|ODPA_RICPR sp|Q9R9N5|ODPA_RHIME sp|O66112|ODPA_ZYMMO sp|P52900|ODPA_SMIMA; Ortholog to ERGA_CDS_07830 Pyruvate dehydrogenase E1 component, alpha subunit	pyruvate dehydrogenase E1 component, alpha subunit precursor	COG1071 pyruvate dehydrogenase E1 component alpha subunit	go_component: mitochondrion [goid 0005739]; go_component: pyruvate dehydrogenase complex [goid 0045254]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid 0004739]; go_process: pyruvate metabolism [goid 0006090] pyruvate dehydrogenase complex alpha subunit, putative	Pyruvate dehydrogenase E1 component alpha subunit	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit	go_component: mitochondrion [goid 0005739]; go_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [goid 0016624]; go_process: metabolism [goid 0008152] pyruvate dehydrogenase E1 component alpha subunit, putative	Similar to sp|Q9ZDR4|ODPA_RICPR sp|Q9R9N5|ODPA_RHIME sp|O66112|ODPA_ZYMMO sp|P52900|ODPA_SMIMA; Ortholog to ERWE_CDS_07920 Pyruvate dehydrogenase E1 component, alpha subunit	pyruvate dehydrogenase (lipoamide)	Pyruvate dehydrogenase e1 component, alpha subunit precursor	dehydrogenase, E1 component	Pyruvate dehydrogenase	Pyruvate dehydrogenase (lipoamide)	Dehydrogenase, E1 component:Mitochondrial substrate carrier	Dehydrogenase, E1 component	PYRUVATE + LIPOAMIDE = S- ACETYLDIHYDROLIPOAMIDE + CO(2). Cofactor: THIAMINE PYROPHOSPHATE (BY SIMILARITY).  Citation: Cabanes,D., Boistard,P., Batut,J., (2000) Mol.  Plant Microbe Interact. 13:483-493 Pyruvate dehydrogenase E1 component, alpha subunit	Pyruvate dehydrogenase	Pyruvate dehydrogenase (lipoamide)	dehydrogenase E1 component, alpha subunit identified by match to protein family HMM PF00676	
RICPR00251	Pyruvate dehydrogenase E1 component subunit beta	pyruvate dehydrogenase E1 component beta subunit	identified by similarity to SP:Q9R9N4; match to protein family HMM PF00364; match to protein family HMM PF02779; match to protein family HMM PF02780 pyruvate dehydrogenase complex, E1 component, beta subunit	Pyruvate dehydrogenase E1 component beta subunit	Pyruvate dehydrogenase beta subunit protein	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, eukaryotic type, beta subunit	Similar to the C-terminal beta domains of: Rhizobium meliloti pyruvate dehydrogenase E1 component, beta subunit PdhB SWALL:ODPB_RHIME (SWALL:Q9R9N4) (460 aa) fasta scores: E(): 2.1e-63, 50% id in 326 aa and to Brucella melitensis pyruvate dehydrogenase E1 component, beta subunit bmei0855 SWALL:Q8YHE6 (EMBL:AE009526) (461 aa) fasta scores: E(): 3.8e-64, 50.3% id in 326 aa pyruvate dehydrogenase E1 component, beta subunit	similar to BR1128, pyruvate dehydrogenase complex, E1 component, beta subunit PdhB, pyruvate dehydrogenase complex, E1 component, beta subunit	Pyruvate dehydrogenase E1 component beta subunit	pyruvate dehydrogenase E1 beta subunit	Similar to sp|Q9R9N4|ODPB_RHIME sp|Q9ZDR3|ODPB_RICPR; Ortholog to ERGA_CDS_00910 Pyruvate dehydrogenase E1 component, beta subunit precursor	COG0022 pyruvate dehydrogenase E1 component beta subunit	LmjF25.1710, predicted protein, len = 351 aa, probably pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor; predicted pI = 5.7160; good similarity to many pyruvate dehydrogenase e1 component beta subunit, mitochondrial precursor proteins in diverse organisms; contains both a transketolase, pyridine binding domain and a transketolase, C-terminal domain pyruvate dehydrogenase E1 beta subunit, putative	similar to pyruvate dehydrogenase E1 B-subunit; pdbA (GI:45771900) (Aspergillus niger); go_component: mitochondrion [goid 0005739]; go_component: pyruvate dehydrogenase complex [goid 0045254]; go_function: pyruvate dehydrogenase (acetyl-transferring) activity [goid 0004739]; go_process: pyruvate metabolism [goid 0006090] pyruvate dehydrogenase E1 beta subunit, putative	Pyruvate dehydrogenase E1 component beta subunit	Pyruvate/2-oxoglutarate dehydrogenase complex, beta subunit	Similar to sp|Q9R9N4|ODPB_RHIME sp|Q9ZDR3|ODPB_RICPR; Ortholog to ERWE_CDS_00950 Pyruvate dehydrogenase E1 component, beta subunit precursor	Pyruvate dehydrogenase E1 component, beta subunit precursor	Transketolase	Biotin/lipoyl attachment:2-oxo acid dehydrogenase, acyltransferase component, lipoyl-binding:Transketolase, central region:Tr...	PYRUVATE + LIPOAMIDE = S- ACETYLDIHYDROLIPOAMIDE + CO(2). THIAMINE PYROPHOSPHATE AND CONTAINS ONE COVALENTLY-BOUND LIPOYL COFACTOR (BY SIMILARITY). Citation: Cabanes,D., Boistard,P., Batut,J.,(2000) Mol. Plant Microbe Interact. 13:483-493 Pyruvate dehydrogenase E1 component, beta subunit	Transketolase, central region	Transketolase protein	Transketolase, central region	Transketolase	pyruvate dehydrogenase (lipoamide) beta [Source:HGNC Symbol;Acc:8808]	pyruvate dehydrogenase E1 component, beta subunit identified by match to protein family HMM PF02779; match to protein family HMM PF02780	
RICPR00252	Putative uncharacterized protein RP263	GTP-binding protein typA	Elongation factor EF-G	Residues 1 to 607 of 607 are 99 pct identical to residues 1 to 607 of a 607 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290496.1 putative GTP-binding factor	Putative GTPase	GTP-binding elongation factor:Elongation factor Tu domain 2	GTP-binding elongation factor homologue	Putative gtpase typa-related protein	GTPase	Similar to GTP-binding protein TypA/BipA hypothetical protein	conserved gene virulence regulator BipA	Similar to GTP-binding protein TypA/BipA hypothetical protein	GTP-binding protein TypA	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 GTP-binding protein TypA	GTP-binding protein; BipA TypA	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 GTP-binding protein TypA	GTP-binding protein TypA	GTP-binding protein TypA/BipA (tyrosine phosphorylated protein A)	GTP-binding elongation factor protein	GTP-binding elongation factor	ELONGATION FACTOR TU FAMILY PROTEIN	Predicted membrane GTPase	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 GTP-binding protein TypA	Putative uncharacterized protein	GTP-binding elongation factor protein	GTP-binding elongation factor family protein	Mb1197, typA, len: 628 aa. Equivalent to Rv1165, len: 628 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 628 aa overlap). Possible typA (alternate gene name: bipA), GTP-binding translation elongation factor, similar to several e.g.  P32132|TYPA_ECOLI|BIPA|B387 Escherichia coli (591 aa); YIHK_SYNY3|P72749 GTP-binding protein TYPA/BIPA homolog from synechocystis sp. (597 aa), FASTA scores: E(): 0, (46.9% identity in 610 aa overlap); and to elongation factor EF-G from many organims e.g. EFG_MICLU|P09952 micrococcus luteus (701 aa), FASTA scores: E(): 3e-24, (29.8% identity in 500 aa overlap). BELONGS TO THE GTP-BINDING ELONGATION FACTOR FAMILY, TYPA SUBFAMILY. POSSIBLE GTP-BINDING TRANSLATION ELONGATION FACTOR TYPA (TYROSINE PHOSPHORYLATED PROTEIN A) (GTP-BINDING PROTEIN)	similar to GTP-binding elongation factor; Molecular Function: GTP binding (GO:0005525) GTP-binding protein TypA	GTP-binding protein TypA/BipA tyrosine phosphorylated protein A	
RICPR00253	Putative uncharacterized protein RP264	Similar to rc||RC0352 rp||RP264; Ortholog to ERGA_CDS_08670 Conserved hypothetical protein	conserved family - putative outer membrane protein hypothetical protein	Outer membrane protein (OmpH-like)	Similar to rc||RC0352 rp||RP264; Ortholog to ERWE_CDS_08760 Conserved hypothetical protein	unknown	conserved hypothetical protein	Outer membrane protein	conserved hypothetical protein identified by similarity to GB:AAS14739.1	outer membrane protein, OmpH family identified by match to protein family HMM PF03938	Outer membrane protein	Putative uncharacterized protein	Outer membrane protein	Outer membrane protein	Putative uncharacterized protein	hypothetical protein	Pyruvate dehydrogenase subunit beta	Putative outer membrane chaperone protein skp	Putative outer membrane chaperone protein skp	Outer membrane protein	Outer membrane protein OmpH	Outer membrane protein	Outer membrane protein	Outer membrane protein H	Outer membrane protein	
RICPR00254	Isocitrate dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark isocitrate dehydrogenase	Isocitrate dehydrogenase	Isocitrate/isopropylmalate dehydrogenase, LeuB	Similar to sp|Q92IR7|IDH_RICCN sp|Q9ZDR0|IDH_RICPR; Ortholog to ERGA_CDS_08940 Isocitrate dehydrogenase [NADP]	COG0538 Icd isocitrate dehydrogenases; go_process: 0008152 isocitrate dehydrogenase	Isocitrate dehydrogenase	Similar to sp|Q92IR7|IDH_RICCN sp|Q9ZDR0|IDH_RICPR; Ortholog to ERWE_CDS_09040 Isocitrate dehydrogenase [NADP]	Isocitrate dehydrogenase, NADP-dependent	Isocitrate dehydrogenase (NAD+)	identified by match to protein family HMM PF00180 putative isocitrate dehydrogenase, NAD-dependent	dehydrogenase, isocitrate/isopropylmalate family identified by match to protein family HMM PF00180	Isocitrate dehydrogenase (NAD+)	Isocitrate dehydrogenase, NADP-dependent	dehydrogenase, isocitrate/isopropylmalate family identified by match to protein family HMM PF00180	isocitrate dehydrogenase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	dehydrogenase, isocitrate/isopropylmalate family identified by match to protein family HMM PF00180	Isocitrate dehydrogenase (NADP+) cytoplasmic protein	Isocitrate dehydrogenase (NAD(+)) PFAM: isocitrate/isopropylmalate dehydrogenase KEGG: pcu:pc1783 probable isocitrate dehydrogenase (NADP)	Isocitrate dehydrogenase (NADP+) cytoplasmic protein	Isocitrate dehydrogenase (NAD(+)) PFAM: isocitrate/isopropylmalate dehydrogenase KEGG: chy:CHY_1107 putative isocitrate dehydrogenase, NAD-dependent	putative isocitrate/3-isopropylmalate dehydrogenase	Isocitrate/isopropylmalate dehydrogenase	Putative isocitrate dehydrogenase [NAD] subunit alpha	Isocitrate dehydrogenase, NADP-dependent	Isocitrate dehydrogenase	Isocitrate dehydrogenase, NADP-dependent	Isocitrate dehydrogenase	Isocitrate dehydrogenase	
RICPR00255	UPF0091 protein RP266	Similar to sp|Q92IR6|Y354_RICCN; Ortholog to ERGA_CDS_05720 Conserved hypothetical protein	Similar to sp|Q92IR6|Y354_RICCN; Ortholog to ERWE_CDS_05820 Conserved hypothetical protein	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Na+/H+ antiporter subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit	monovalent cation/proton antiporter, MnhG/PhaG subunit family identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300	Monovalent cation/proton antiporter, MnhG/PhaG subunit precursor	Monovalent cation/proton antiporter, MnhG/PhaG subunit precursor	Multisubunit Na+/H+ antiporter, MnhG subunit	Putative monovalent cation/H+ antiporter subunit G	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit PFAM: Na+/H+ antiporter subunit KEGG: hne:HNE_0731 monovalent cation/proton antiporter, MnhG/PhaG family monovalent cation/proton antiporter, MnhG/PhaG subunit	KEGG: hne:HNE_0731 monovalent cation/proton antiporter, MnhG/PhaG family Multisubunit Na+/H+ antiporter MnhG subunit-like protein	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Putative monovalent cation/H+ antiporter subunit G	Monovalent cation/proton antiporter, MnhG/PhaG subunit	sodium/proton antiporter protein	Putative monovalent cation/H+ antiporter subunit G	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit precursor	Monovalent cation/proton antiporter, MnhG/PhaG subunit precursor	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Putative Na+/H+ antiporter subunit	Monovalent cation/proton antiporter, MnhG/PhaG subunit	Na+/H+ antiporter subunit	
RICPR00256	Putative uncharacterized protein RP267	Multisubunit Na+/H+ antiporter, MnhB subunit	Na+/H+ antiporter MnhB subunit-related protein precursor	Hypothetical protein	Hypothetical protein precursor	Putative monovalent cation/H+ antiporter subunit B	Multisubunit Na+/H+ antiporter, MnhB subunit	PFAM: Na+/H+ antiporter MnhB subunit-related protein KEGG: sfr:Sfri_2284 Na+/H+ antiporter MnhB subunit-related protein Na+/H+ antiporter MnhB subunit-related protein	KEGG: sfr:Sfri_2284 Na+/H+ antiporter MnhB subunit-related protein Na+/H+ antiporter MnhB subunit-related protein	Putative monovalent cation/H+ antiporter subunit B	Putative monovalent cation/H+ antiporter subunit B	ShaA sodium/proton antiporter protein; ShaB	Putative uncharacterized protein	Na+/H+ antiporter MnhB subunit-related protein	Na+/H+ antiporter MnhB subunit-related protein	Na+/H+ antiporter MnhB subunit-related protein	Na+/H+ antiporter MnhB subunit-like protein	MnhB	Na+/H+ antiporter MnhB subunit-related protein	Putative monovalent cation/H+ antiporter subunit B	Multisubunit Na+/H+ antiporter, MnhB subunit	
RICPR00257	Uncharacterized protein RP268	Heme exporter protein B	Heme exporter protein B	Heme exporter protein B	Heme exporter protein B	Heme exporter protein B	Heme exporter protein B	heme exporter protein B	Heme exporter protein B	Heme exporter protein B	Heme exporter protein B	
RICPR00258	Uncharacterized protein RP269	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00259	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 ubiquinol--cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit	Rieske Fe-S protein	Ubiquinol-cytochrome c reductase iron-sulfur subunit	similar to BR1543, ubiquinol-cytochrome c reductase, iron-sulfur subunit ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit	Similar to sp|Q9ZDQ5|UCRI_RICPR sp|P51130|UCRI_BRAJA sp|P23136|UCRI_RHORU rc||petA rp||petA; Ortholog to ERGA_CDS_05180 Ubiquinol-cytochrome C reductase iron-sulfur subunit	COG0723 QcrA Rieske Fe-S protein similar to EAA25593.1; go_process: 0006118 cytochrome B6-F complex iron-sulfur subunit	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Rieske Fe-S protein; COG0723 ubiquinol-cytochrome-c reductase	ubiquinol-cytochrome c reductase iron-sulfur subunit	Ubiquinol-cytochrome C reductase iron-sulfur subunit	Iron-sulfur subunit of cytochrome bc1	ubiquinol cytochrome C oxidoreductase, iron-sulfur subunit	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416 ubiquinol-cytochrome c reductase, iron-sulfur subunit	cytochrome b6-f complex iron-sulfur subunit	Similar to sp|Q9ZDQ5|UCRI_RICPR sp|P51130|UCRI_BRAJA sp|P23136|UCRI_RHORU rc||petA rp||petA; Ortholog to ERWE_CDS_05280 Ubiquinol-cytochrome C reductase iron-sulfur subunit	identified by similarity to SP:P23136; match to protein family HMM PF00355; match to protein family HMM TIGR01416 ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase, iron-sulfur subunit	Ubiquinol-cytochrome c reductase, iron-sulfur subunit	Best Blastp Hit: gb|AAF42373.1| (AE002555) ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningitidis MC58] >gi|7379136|emb|CAB83684.1| (AL162753) ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningitidis] COG0723 Rieske Fe-S protein; PetA putative ubiquinol--cytochrome c reductase iron-sulfur subunit	
RICPR00260	Cytochrome b	Cytochrome b	Similar to ubiquinol--cytochrome c reductase, cytochrome b hypothetical protein	conserved gene ubiquinol-cytochrome c reductase, cytochrome b	Similar to ubiquinol--cytochrome c reductase, cytochrome b hypothetical protein	identified by similarity to SP:P05418; match to protein family HMM PF00032; match to protein family HMM PF00033 ubiquinol--cytochrome c reductase, cytochrome B	Cytochrome b	Cytochrome b	identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033 ubiquinol--cytochrome c reductase, cytochrome b subunit	Cytochrome b	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinol cytochrome C oxidoreductase, cytochrome B subunit	Quinol-cytochrome c reductase, cytochrome b subunit	Cytochrome b subunit of the bc complex	Cytochrome b	similar to BR1542, ubiquinol-cytochrome c reductase, cytochrome b PetB, ubiquinol-cytochrome c reductase, cytochrome b	Cytochrome b	Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit	Cytochrome B	Similar to sp|O54070|CYB_RICPR sp|P23134|CYB_RHORU sp|P81378|CYB_RHOVI; Ortholog to ERGA_CDS_05170 Cytochrome B	COG3658 - cytochrome b; go_component: 0016020 cytochrome B	Cytochrome b	COG1290 cytochrome b subunit	cytochrome b	Cytochrome b	Cytochrome b subunit of the bc complex	Cytochrome B subunit of cytochrome bc1	ubiquinol cytochrome C oxidoreductase, cytochrome B subunit	Ubiquinol-cytochrome c reductase cytochrome b subunit	
RICPR00261	CYTOCHROME C1, HEME PROTEIN	Putative cytochrome c1 transmembrane protein	identified by similarity to SP:Q02760; match to protein family HMM PF02167 ubiquinol--cytochrome c reductase, cytochrome c1	Ubiquinol-cytochrome c reductase	Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Ubiquinol--cytochrome c reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Cytochrome c1	similar to BR1541, ubiquinol-cytochrome c reductase, cytochrome c1, hypothetical ubiquinol-cytochrome c reductase, cytochrome c1, hypothetical	Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	pseudo	Cytochrome C1	COG2857 CYT1 cytochrome c1 similar to EAA25591.1; go_component: 0005746 cytochrome c1, heme protein precursor	COG2857 cytochrome c1	LmjF07.0060, predicted protein, len = 259 aa, cytochrome c1; predicted pI = 7.6239; high similarity to Q26325, cytochrome c1 in Trypanosoma brucei; contains a very good hit to a cytochrome C1 family pfam domain across the whole protein Automatic annotation via reciprocal BLAST Automatic annotation via reciprocal BLAST cytochrome c1, heme protein, mitochondrial precursor, putative	Cytochrome C1 subunit of cytochrome bc1	ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit	Ubiquinol-cytochrome-c reductase	ubiquinol-cytochrome-c reductase	go_component: mitochondrial electron transport chain [goid 0005746]; go_function: electron transporter activity [goid 0005489]; go_process: electron transport [goid 0006118] cytochrome c1, heme protein, mitochondrial precursor	Similar to sp|P23135|CY1_RHORU sp|P00125|CY1_BOVIN sp|P25076|CY11_SOLTU sp|Q9D0M3|CY1_MOUSE sp|P08574|CY1_HUMAN rp||fbcH Similar to human and bovine Cytochrome c1	Cytochrome c1	Cytochrome c1	Cytochrome c1, heme protein precursor	Best Blastp Hit: emb|CAB83686.1| (AL162753) cytochrome C1 precursor [Neisseria meningitidis]; PetC putative cytochrome C1 precursor	Cytochrome c1	Cytochrome c heme-binding site:Ribosomal protein P2:Cytochrome c1	similar to R. sphaeroides fbcC gene product identified in strain Ga and NCIB8253; Pfam: cytochrome C1 family (cyt c1 subunit of bc1 [ubiquinol:ferricytochrome c oxidoreductase] complex); Citation: Eur.J.Biochem.1990,194:399-411;J.Biol.Chem.1990, 265:1208-1215;Biochim.Biophys.Acta 1987,891:227-241;Biochem.1990,29:2645-2651. Cytochrome c1 precursor	
RICPR00262	Small heat shock protein C1	similar to gi|4884483|emb|CAB43207.1| [Streptococcus thermophilus], percent identity 48 in 135 aa, BLASTP E(): 4e-30 putative small heat shock protein	Small heat shock protein	putative small heat shock protein similarity:fasta; with=UniProt:O69243_BRAJA (EMBL:BJAJ3064); Bradyrhizobium japonicum.; HspF (Small heat shock protein).; length=163; id 38.816; 152 aa overlap; query 38-188; subject 17-160 similarity:fasta; with=UniProt:Q89C37_BRAJA (EMBL:BA000040); Bradyrhizobium japonicum.; Blr7961 protein.; length=175; id 52.542; 177 aa overlap; query 23-191; subject 1-175	Heat shock protein, molecular chaperone	Molecular chaperone (small heat shock protein)	Molecular chaperone (small heat shock protein)	Molecular chaperone (small heat shock protein)	Heat shock protein Hsp20	Heat shock protein	Small heat shock protein	Small heat shock protein	Heat shock protein	small heat shock protein	Putative monovalent cation/H+ antiporter subunit B	heat shock protein Hsp20 PFAM: heat shock protein Hsp20; KEGG: cbe:Cbei_4123 heat shock protein HSP20	Small heat shock protein	Small heat shock protein	Small heat shock protein, Hsp20 family	

RICPR00264	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	Residues 1 to 599 of 599 are 100 pct identical to residues 1 to 599 of a 599 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289127.1 GTP-binding elongation factor, may be inner membrane protein	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding membrane protein	GTP-binding protein lepA	GTP-binding protein lepA	Similar to GTP-binding elongation factor hypothetical protein	conserved gene GTP binding elongation factor LepA	Similar to GTP-binding elongation factor hypothetical protein	GTP-binding protein lepA 1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein	identified by similarity to SP:P37949; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	GTP-binding protein lepA	GTP-binding protein	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	GTP-binding protein lepA	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393 GTP-binding protein LepA	

RICPR00266	Putative uncharacterized protein RP278	unknown	Putative uncharacterized protein	

RICPR00268	ROD SHAPE-DETERMINING PROTEIN RODA	MrdB protein	Probable rod shape-determining (Roda protein) transmembrane	Rod shape-determining protein RodA	identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 rod shape-determining protein MreD	Probable rod shape-determining	Rod shape-determining protein	Bacterial cell division membrane protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark rod shape-determining protein	Rod shape determining protein RodA	IPR001182: Cell cycle protein rod shape-determining membrane protein; cell elongation in e phase	similar to Salmonella typhi CT18 rod shape-determining protein RodA rod shape-determining protein RodA	Bacterial cell division membrane protein FtsW/MrdB/SpoVE	Rod shape-determining protein	Rod shape-determining protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype rod shape-determining protein	COG0772 FtsW bacterial cell division membrane protein similar to NP_220664.1 rod shape determining protein	RodA, cell division membrane protein; COG0772 rod shape-determining protein	Similar to: HI0031, RODA_HAEIN Rod shape-determining protein RodA	Bacterial cell division membrane protein FtsW protein	Rod-shape-determining protein RodA	Rod shape-determining membrane protein; cell elongation in e phase	Rod shape-determining protein	rod shape-determining protein	Rod shape-determining protein RodA	identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 rod shape-determining protein RodA	rod shape-determining protein rodA	Rod shape-determining protein rodA	
RICPR00269	PROTEASE II	Residues 1 to 686 of 686 are 99 pct identical to residues 1 to 686 of a 686 aa protein from Escherichia coli K12 ref: NP_416359.1 protease II	Oligopeptidase B	Protease II	Peptidase	PtrBa	Protease II protein	PROBABLE PROTEASE II PTRBB	Mb0804, ptrB, len: 719 aa. Equivalent to Rv0781 and Rv0782, len: 236 aa and 552 aa, from Mycobacterium tuberculosis strain H37Rv, (97.6% identity in 206 aa overlap and 100.0% identity in 517 aa overlap). Probable ptrB, protease II (EC 3.4.21.83), equivalent to NP_302455.1|NC_002677 protease II from Mycobacterium leprae (724 aa). Also highly similar to C-termini of many proteases II e.g. P24555|PTRB_ECOLI|TLP|B1845 protease II from Escherichia coli strains K12 and HB101 (707 aa), FASTA scores: opt: 204, E(): 7.4e-07, (29.6% identity in 230 aa overlap); etc. Also highly similar to N-termini of many proteases II e.g. P24555|PTRB_ECOLI|TLP|B1845 protease II from Escherichia coli strains K12 and HB101 (707 aa), FASTA scores: opt: 1251, E(): 0, (42.7% identity in 489 aa overlap); etc. ORFs Rv0782 and Rv0781 appear to be a frameshifted homologues of protease II, but we can find no error in the cosmid sequence to account for this.  BELONGS TO PEPTIDASE FAMILY S9A; ALSO KNOWN AS THE PROLYL OLIGOPEPTIDASE FAMILY. Note that previously known as ptrBb. REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, ptrB is split into 2 genes, ptrBa and ptrBb, due to a frameshift. In Mycobacterium bovis, a 2 bp insertion (*-gc) leads to a single product. PROBABLE PROTEASE II PTRB (OLIGOPEPTIDASE B)	putative amine dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protease II; oligopeptidase B	IPR000379: Esterase/lipase/thioesterase; IPR002470: Prolyl oligopeptidase serine protease (S9A); IPR002471: Prolyl endopeptidase, serine active site protease II	similar to Salmonella typhi Ty2 oligopeptidase oligopeptidase	similar to BR0568, protease II PtrB, protease	Protease II	Protease II	Oligopeptidase B	Putative Protease II (oligopeptidase B)	COG1770 protease II	Peptidase, putative	Protease II	Protease II	protease II	Oligopeptidase B	oligopeptidase B	Protease II (EC 3.4.21.83) (Oligopeptidase B).,Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues.	identified by match to protein family HMM PF00326; match to protein family HMM PF02897 protease II	identified by match to protein family HMM PF00326; match to protein family HMM PF02897 protease II	
RICPR00270	NADH DEHYDROGENASE I CHAIN N	NADH dehydrogenase I chain N	Putative monovalent cation/H+ antiporter subunit D	NADH dehydrogenase I chain N	Putative monovalent cation/H+ antiporter subunit D	NADH-quinone oxidoreductase chain L family protein	NADH dehydrogenase subunit N	jgi|Lotgi1|136730|e_gw1.109.74.1	NADH dehydrogenase I subunit M	MnhA1	Putative monovalent cation/H+ antiporter subunit D	
RICPR00271	NADH DEHYDROGENASE I CHAIN L	Similar to rc||nuoL2 rp||nuoL2; Ortholog to ERGA_CDS_06950 NADH dehydrogenase I chain L	NADH dehydrogenase subunit 5	Similar to rc||nuoL2 rp||nuoL2; Ortholog to ERWE_CDS_07030 NADH dehydrogenase I chain L	NADH dehydrogenase I chain L	pH adaptation potassium efflux system protein D 1; sodium/hydrogen antiporter subunit	NADH dehydrogenase (quinone)	NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361	NADH dehydrogenase I chain L	NADH dehydrogenase (quinone)	NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361	probable NADH-ubiquinone oxidoreductase protein similar to SMa1541 [Sinorhizobium meliloti] Similar to swissprot:Q92YN3 Putative location:bacterial inner membrane Psort-Score: 0.3612; go_component: extrachromosomal DNA [goid 0046821]; go_function: oxidoreductase activity [goid 0016491]; go_function: NADH dehydrogenase (ubiquinone) activity [goid 0008137]; go_process: mitochondrial electron transport, NADH to ubiquinone [goid 0006120]	NADH dehydrogenase (Quinone) precursor	NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361	NADH dehydrogenase (Quinone) precursor	Putative NADH-quinone oxidoreductase	Ech hydrogenase, subunit A	NADH dehydrogenase (Quinone) precursor	NADH dehydrogenase (quinone) PFAM: NADH/Ubiquinone/plastoquinone (complex I) KEGG: bcz:BCZK4992 NADH dehydrogenase I, subunit L (NADH-quinone oxidoreductase, chain L)	Putative NADH dehydrogenase I chain M	NADH dehydrogenase (Quinone) precursor	NADH dehydrogenase I chain L	NADH dehydrogenase	Putative monovalent cation/H+ antiporter subunit D	NADH dehydrogenase I chain L	PFAM: NADH/Ubiquinone/plastoquinone (complex I) KEGG: pla:Plav_2966 NADH dehydrogenase (quinone) NADH dehydrogenase (quinone)	NADH dehydrogenase	Putative monovalent cation/H+ antiporter subunit D	Putative monovalent cation/H+ antiporter subunit D	
RICPR00272	NADH DEHYDROGENASE I CHAIN N	membrane bound hydrogenase, MbxH subunit	identified by similarity to OMNI:NTL01SA0838; match to protein family HMM PF00361 Na+/H+ antiporter, MnhD component	NADH-ubiquinone oxidoreductase protein	Multisubunit Na+/H+ antiporter, MnhD subunit	MnhD homologue, similar to Na+/H+ antiporter subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR0633 putative NADH-Ubiquinone/plastoquinone (complex I) oxidoreductase protein	Similar to rc||nuoN2 rp||nuoN2 rp||nuoM rc||nuoM sp|Q8K9X5|NUON_BUCAP sp|Q9ZCG0|NUOM_RICPR sp|Q92G96|NUOM_RICCN sp|Q8YMQ0|NU2C_ANASP sp|P57264|NUON_BUCAI rc||nuoL2; Ortholog to ERGA_CDS_01160 NADH dehydrogenase I chain N	conserved family - putative NADH dehydrogenase hypothetical protein	Multisubunit Na+/H+ antiporter, MnhD subunit	PhaD protein	identified by match to protein family HMM PF00361 monovalent cation/proton antiporter, MnhD/PhaD family subunit	Similar to rc||nuoN2 rp||nuoN2 rp||nuoM rc||nuoM sp|Q8K9X5|NUON_BUCAP sp|Q9ZCG0|NUOM_RICPR sp|Q92G96|NUOM_RICCN sp|Q8YMQ0|NU2C_ANASP sp|P57264|NUON_BUCAI rc||nuoL2; Ortholog to ERWE_CDS_01200 NADH dehydrogenase I chain N	NADH/Ubiquinone/plastoquinone (complex I)	NADH dehydrogenase (quinone)	NADH:ubiquinone oxidoreductase subunit 2 (chain N)	NADH/Ubiquinone/plastoquinone (complex I)	pH adaptation potassium efflux system protein D 3; sodium/hydrogen antiporter subunit	NADH dehydrogenase (quinone)	identified by match to protein family HMM PF00361 Na+/H+ antiporter, MnhD component, putative	NADH dehydrogenase (quinone)	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative NADH dehydrogenase	Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit-like	NADH-ubiquinone/plastoquinone oxidoreductase family protein identified by match to protein family HMM PF00361	K(+)/H(+) antiporter subunit D (pH adaptation potassium efflux system protein D)	NADH dehydrogenase (quinone)	NADH-Ubiquinone/plastoquinone (complex I), various chains domain protein identified by match to protein family HMM PF00361	putative Na+/H+ antiporter, MnhD component identified by match to protein family HMM PF00361	NADH dehydrogenase (quinone)	
RICPR00273	Putative uncharacterized protein RP285	Na(+)/H(+) antiporter subunit C1	identified by similarity to OMNI:SA0953; match to protein family HMM PF00420; match to protein family HMM PF01898; match to protein family HMM TIGR00941 Na+/H+ antiporter, MnhC component	Na+/H+ antiporter subunit	Na+/H+ antiporter	InterProMatches:IPR001133; multiple resistance and pH homeostasis, Biological Process: mitochondrial electron transport, NADH to ubiquinone (GO:0006120), Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137) MrpC	Multisubunit Na+/H+ antiporter, MnhC subunit	Na+/H+ antiporter subunit	Ortholog of S. aureus MRSA252 (BX571856) SAR0912 Na+/H+ antiporter subunit	Na+/H+ antiporter subunit	Similar to rc||RC0383 rp||RP285; Ortholog to ERGA_CDS_05690 Conserved hypothetical protein	identified by similarity to GP:6650385; match to protein family HMM PF00420; match to protein family HMM PF01898 Na+/H+ antiporter component C, putative	Na+/H+ antiporter, MnhC subunit	Similar to rc||RC0383 rp||RP285; Ortholog to ERWE_CDS_05790 Conserved hypothetical protein	Previously sequenced as Staphylococcus aureus Na+/H+ antiporter subunit MnhC TR:Q9ZNG4 (EMBL:AB015981) (113 aa) fasta scores: E(): 5.2e-39, 99.115% id in 113 aa.  Similar to Bacillus subtilis hypothetical protein YufV TR:O05260 (EMBL:Z93937) (113 aa) fasta scores: E(): 2.5e-19, 53.704% id in 108 aa Na+/H+ antiporter subunit	Multisubunit Na+/H+ antiporter, MnhC subunit	pH adaptation potassium efflux system protein C; sodium/hydrogen antiporter subunit	NADH-ubiquinone oxidoreductase, chain 4L	identified by similarity to GP:4001727; match to protein family HMM PF00420; match to protein family HMM TIGR00941 Na+/H+ antiporter, MnhC component	NADH-ubiquinone oxidoreductase, chain 4L	multicomponent K+:H+ antiporter subunit C	cation transport system protein, putative identified by match to protein family HMM PF00420	Na(+)/H(+) antiporter subunit C identified by match to protein family HMM PF00420; match to protein family HMM TIGR00941	Na+/H+ antiporter subunit	NADH-ubiquinone oxidoreductase, chain 4L	Multisubunit Na+/H+ antiporter, MnhC subunit	putative Na(+)/H(+) antiporter subunit C similarity:fasta; with=UniProt:MRPC_BACSU (EMBL:C70010); Bacillus subtilis.; mrpC; Na(+)/H(+) antiporter subunit C (Multiple resistance and pH homeostasis protein C) (Mrp complex subunit C).; length=113; id 45.614; 114 aa overlap; query 2-115; subject 1-110 similarity:fasta; with=UniProt:Q8UGX4; Agrobacterium tumefaciens (strain C58/ATCC 33970).; mnhC; Na+/H+ antiporter (AGR_C_1661p).; length=125; id 76.000; 125 aa overlap; query 2-126; subject 1-125	NADH-ubiquinone oxidoreductase, chain 4L	putative monovalent cation/proton antiporter identified by similarity to GB:AAS14942.1; match to protein family HMM PF00420	
RICPR00274	PROBABLE CONJUGAL TRANSFER PROTEIN TRBG	Probable conjugal transfer lipoprotein trbg	Legionella vir homologue protein	conserved gene LvhB9	Legionella vir homologue protein	Conjugal transfer protein	Type IV secretory pathway, VirB9 component	VirB9 protein	TrwF protein	TriH protein	Similar to rc||trbG rp||trbG; Ortholog to ERGA_CDS_07840 Probable conjugal transfer protein TRBG precursor	go_process: 0009405 conjugal transfer protein trbG precursor	channel protein VirB9	mating pair formation protein TrbG	Similar to rc||trbG rp||trbG; Ortholog to ERWE_CDS_07930 Probable conjugal transfer protein TRBG precursor	Conjugal transfer protein TrbG/VirB9/CagX	Probable conjugal transfer protein trbG precursor VirB9 protein	Conjugal transfer protein TrbG/VirB9/CagX	type IV secretion system protein VirB9 identified by similarity to GB:AAM00415.1; match to protein family HMM PF03524	VirB9	putative conjugative DNA transfer protein similarity:fasta; with=UniProt:Q7X252_9RHIZ (EMBL:BTR496288); Bartonella tribocorum.; TrwF protein.; length=275; id 27.519; 258 aa overlap; query 1-245; subject 7-246 similarity:fasta; with=UniProt:Q9A5M6_CAUCR (EMBL:AE005911); Caulobacter crescentus.; Type IV secretion system protein B9, putative.; length=252; id 32.000; 225 aa overlap; query 32-249; subject 15-236	Conjugal transfer protein TrbG/VirB9/CagX precursor	type IV secretion system protein VirB9	Conjugal transfer protein TrbG/VirB9/CagX PFAM: Conjugal transfer protein TrbG/VirB9/CagX: (2.8e-41) KEGG: mlo:mlr9258 conjugal transfer protein, trbG, ev=3e-25, 32% identity	Conjugal transfer protein TrbG/VirB9/CagX	type IV secretion system protein VirB9 identified by similarity to GB:AAM00421.1; match to protein family HMM PF03524	conjugal transfer protein G Similar to TrbG [Rhizobium rhizogenes] Similar to entrez-protein:AAO43549.1 Putative location:bacterial periplasmic space Psort-Score: 0.4483	type IV secretion system protein, VirB9 identified by match to protein family HMM PF03524	type IV secretion system protein B9, putative COG3504 Type IV secretory pathway, VirB9 components	
RICPR00275	VIRB8 PROTEIN	Similar to rp||virB8 rc||virB8; Ortholog to ERGA_CDS_04520 VirB8 protein	conserved family - putative type IV secretory pathway, component VirB8 hypothetical protein	Similar to rp||virB8 rc||virB8; Ortholog to ERWE_CDS_04610 VirB8 protein	VirB8 protein	type IV secretion system protein VirB8, putative	VirB8	type IV secretion system protein VirB8 identified by similarity to GB:AAS14504.1	Type IV secretion system protein	VirB8 protein	VirB8	VirB8 protein	channel protein	Putative uncharacterized protein	Type IV secretion system protein VirB8	Putative type IV secretion system protein VirB8	Type IV secretion system protein VirB8, putative	VirB8a protein	
RICPR00276	Uncharacterized protein RP288	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	channel protein	VirB7 protein	
RICPR00277	Uncharacterized protein RP289	Conjugal transfer protein	Type IV secretion protein AvhB8	Type IV secretory pathway, component VirB8	Type IV secretion system protein virB8	Similar to sp|Q9ZDN8|Y289_RICPR rc||RC0387; Ortholog to ERGA_CDS_00170 Conserved hypothetical protein	COG3736 VirB8 type IV secretion system component VirB8 VirB8 protein	Similar to sp|Q9ZDN8|Y289_RICPR rc||RC0387; Ortholog to ERWE_CDS_00170 Conserved hypothetical protein	VirB8 protein	VirB8	type IV secretion system protein VirB8 identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335	VirB8	VirB8	type IV secretion protein VirB8 identified by similarity to GB:AAM00420.1; match to protein family HMM PF04335	transport secretion system IV, VirB8 protein similar to virB8 (SMa1308) [Sinorhizobium meliloti]; putative location:bacterial inner membrane Psort-Score: 0.3845	type IV secretion system protein VirB8 identified by similarity to GB:AAM00411.1; match to protein family HMM PF04335	cmgB8 identified by match to protein family HMM PF04335	Type IV secretory pathway AvhB8 protein	Type IV secretion system protein	VirB8 family protein precursor	Putative uncharacterized protein	VirB8	VirB8 family protein precursor	VirB8 family protein precursor	VirB8	VirB8 protein	channel protein	VirB8 family protein precursor	Putative uncharacterized protein	
RICPR00278	VIRB9 PROTEIN	VirB9	Type IV secretion system protein	VirB9 protein	VirB9	VirB9	VirB9 protein	channel protein	Putative uncharacterized protein	Type IV secretion system protein VirB9	VirB9b protein	
RICPR00279	VIRB10 PROTEIN	Similar to rc||virB10 rp||virB10; Ortholog to ERGA_CDS_00150 VirB10 protein	COG2948 VirB10 type IV secretory pathway VirB10 components similar to AAM00418.1 VirB10 protein	Similar to rc||virB10 rp||virB10; Ortholog to ERWE_CDS_00150 VirB10 protein	VirB10 protein	conjugation TrbI-like protein	VirB10	type IV secretion system protein VirB10 identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743	Conjugation TrbI family protein precursor	Type IV secretion system protein	VirB10 protein	VirB10	VirB10	VirB10 protein	channel protein	Putative uncharacterized protein	VblB10 protein VirB10-like protein, homologous to VirB10 of Sinorhizobium meliloti (&&&ref|NP_435956.1|),InterPro; Bacterial conjugation TrbI-like protein hypothetical protein	Type IV secretion system protein VirB10	Type IV secretion system protein VirB10	Conjugation TrbI family protein	Type IV secretion system protein VirB10	VirB10 protein	
RICPR00280	VIRB11 PROTEIN	conserved gene LvhB11	Legionella vir homologue protein	Type IV secretion protein	Type IV secretory pathway, VirB11 component	VirB11 protein	DNA transfer protein	Similar to rp||virB11 sp|P05360|VIBY_AGRTU sp|P07169|VIBY_AGRT5; Ortholog to ERGA_CDS_00140 VirB11 protein	COG0630 VirB11 type IV secretory pathway VirB11 components, and related ATPases involved in similar to AAM00419.1 VirB11 protein	Similar to rp||virB11 sp|P05360|VIBY_AGRTU sp|P07169|VIBY_AGRT5; Ortholog to ERWE_CDS_00140 VirB11 protein	VirB11 protein	type IV secretion system protein VirB11 identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437	TriJ	VirB11	putative conjugative DNA transfer/component of type IV secretion system similarity:fasta; with=UniProt:Q9KW37_9RICK (EMBL:AB045235); Wolbachia sp. wKueYO.; virB11; Component of type IV secretion system.; length=330; id 36.086; 327 aa overlap; query 13-333; subject 6-328 similarity:fasta; with=UniProt:Q8KW23_9RHOB (EMBL:AF416331); Ruegeria sp. PR1b.; RC167.; length=349; id 37.771; 323 aa overlap; query 10-332; subject 24-344	type IV secretion system protein VirB11	type II secretion system protein E PFAM: type II secretion system protein E: (3.9e-47) KEGG: ama:AM1313 VirB11 protein, ev=4e-45, 36% identity	type II secretion system protein E	type IV secretion system protein VirB11 identified by similarity to GB:AAM00419.1; match to protein family HMM PF00437	type IV secretion system protein VirB11 identified by similarity to GB:AAM00414.1; match to protein family HMM PF00437	type II secretion system protein E	type IV secretion system protein B11, putative COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis	virB11 protein Function unclear	putative chaperonin Pfam:GSPII_E(37-313) similar to Ralstonia metallidurans gi:22980945	type II secretion system protein E PFAM: type II secretion system protein E KEGG: mlo:mlr9260 component of type IV secretion system	P-type DNA transfer ATPase VirB11 precursor	VirB11 protein	VirB11	P-type DNA transfer ATPase VirB11	
RICPR00281	VIRD4 PROTEIN	putative component of type IV secretion system Legionella vir homologue protein	conserved gene LvhD4	putative component of type IV secretion system Legionella vir homologue protein	Conjugation protein	VirD4 protein	Cag island protein, DNA transfer protein	conjugal transfer protein TraG	VirD4 protein	identified by similarity to SP:Q00185; match to protein family HMM PF02534 conjugal transfer protein	TRAG protein	VirD4 protein	TRAG protein	type IV secretion system protein VirD4 identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534	transfer complex protein TraK identified by match to protein family HMM PF02534	TRAG protein	TraG/TraD family	VirD4	type IV secretion system protein VirD4	TRAG protein PFAM: TRAG protein: (3.6e-71) KEGG: ret:RHE_PA00070 transport secretion system IV, VirD4 protein, ev=2e-77, 34% identity	type IV secretion system protein VirD4 identified by similarity to GB:AAM00422.1; match to protein family HMM PF02534	transport secretion system IV, VirD4 protein Similar to VirD4 [Agrobacterium rhizogenes plasmid pRiA4b] Similar to entrez-protein:P13464 Putative location:bacterial inner membrane Psort-Score: 0.3081; go_component: membrane [goid 0016020]; go_component: integral to membrane [goid 0016021]; go_component: extrachromosomal DNA [goid 0046821]; go_process: unidirectional conjugation [goid 0009291]; go_process: conjugation [goid 0000746]	cag pathogenicity island protein 5	type IV secretion system protein VirD4 identified by similarity to GB:AAM00416.1; match to protein family HMM PF02534	TRAG family protein PFAM: TRAG family protein KEGG: rso:RSc2586 probable plasmid conjugation traG transmembrane protein	TraG/TraD family	Type IV secretory pathway, VirD4 component	TRAG family protein PFAM: TRAG family protein KEGG: rso:RSc2586 probable plasmid conjugation traG transmembrane protein	Putative type IV secretory pathway protein VirD4	
RICPR00282	GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE	GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE	COG0248 exopolyphosphatase	Exopolyphosphatase	Guanosine pentaphosphate phosphohydrolase	Ppx/GppA phosphatase	Ppx-GppA domain Citation: PMID: 8394006 Proc Natl Acad Sci U S A. 1993 Aug 1;90(15):7029-33 Ppx/GppA phosphatase	Ppx/GppA phosphatase	Guanosine pentaphosphate phosphohydrolase	Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase: (9.9e-28) KEGG: sil:SPO1117 phosphatase, Ppx/GppA family, ev=0.0, 73% identity	guanosine pentaphosphate phosphohydrolase	Ppx/GppA phosphatase	Ppx/GppA phosphatase family protein identified by match to protein family HMM PF02541	Exopolyphosphatase	hypothetical protein similarity to COG0248 Exopolyphosphatase(Evalue: 2E-59)	Phosphatase, Ppx/GppA family	Exopolyphosphatase	Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase KEGG: rsp:RSP_0782 Ppx/GppA phosphatase	Ppx/GppA family phosphatase, putative	Exopolyphosphatase	(P25552) Guanosine-5-triphosphate3-diphosphate pyrophosphatase (EC 3.6.1.40) (Guanosine pentaphosphate phosphohydrolase) (pppGpp-5-phosphohydrolase) High confidence in function and specificity	Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase KEGG: rsp:RSP_0782 Ppx/GppA phosphatase	Putative Phosphatase, Ppx/GppA family	Phosphotase, Ppx/GppA family, sugar kinase/actin/hsp70 superfamily	Guanosine pentaphosphate phosphohydrolase	Guanosine pentaphosphate phosphohydrolase	Ppx/GppA phosphatase	Guanosine pentaphosphate phosphohydrolase	Guanosine pentaphosphate phosphohydrolase	


RICPR00283	Uncharacterized protein RP295	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00284	Uncharacterized protein RP296	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00285	CYSQ PROTEIN	Residues 1 to 246 of 246 are 98 pct identical to residues 1 to 246 of a 246 aa protein from Escherichia coli K12 ref: NP_418635.1 affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis	Inositol monophosphatase family protein	CysQ protein	Myo-inositol-1(or 4)-monophosphatase	identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 3'(2'),5'-bisphosphate nucleotidase	Sulfite synthesis pathway protein	identified by similarity to SP:P22255; match to protein family HMM PF00459 CysQ	CysQ protein	IPR000760: Inositol monophosphatase; IPR006240: 3(2),5 -bisphosphate nucleotidase, bacterial affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis	similar to Salmonella typhi CT18 cysQ protein cysQ protein	Putative uncharacterized protein cysQ	Sulfite synthesis pathway protein	Inositol monophosphatase family protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type ph : phenotype PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase, converts PAPS to APS	3'(2'),5'-bisphosphate nucleotidase	COG1218 exopolysaccharide production protein	myo-inositol 1-(4-)phosphatase 3'(2'),5'-bisphosphate nucleotidase	Similar to Salmonella typhimurium CysQ protein or STM4404 SWALL:CYSQ_SALTY (SWALL:P26264) (246 aa) fasta scores: E(): 4e-17, 46.33% id in 259 aa, and to Bacteroides thetaiotaomicron CysQ, sulfite synthesis pathway protein BT0411 SWALL:Q8AAQ3 (EMBL:AE016927) (268 aa) fasta scores: E(): 5.4e-77, 76.22% id in 265 aa, and to Helicobacter hepaticus hypothetical protein CysQ or hh1440 SWALL:AAP78037 (EMBL:AE017148) (266 aa) fasta scores: E(): 2.8e-27, 40.65% id in 246 aa putative sulfite synthesis pathway protein	3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase CysQ protein	3'(2'),5'-bisphosphate nucleotidase	3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase	3'(2'),5'-bisphosphate nucleotidase cysQ	sulfite synthesis pathway protein	Exopolysaccharide production protein	identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 3'(2'),5'-bisphosphate nucleotidase	cysQ protein	acts on 3'-phosphoadenosine-5'-phosphosulfate with sugar phosphatase domain; ortholog to Escherichia coli bnum: b4214; MultiFun: Metabolism 1.8.2 CysQ	identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 3'(2'),5'-bisphosphate nucleotidase	
RICPR00286	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	Residues 1 to 853 of 853 are 99 pct identical to residues 1 to 853 of a 853 aa protein from Escherichia coli O157:H7 ref: NP_311616.1 MutS protein	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein MutS	conserved gene DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	DNA mismatch repair protein mutS	In low GC gram positive bacteria, this gene is generally known as hexA; in other prokaryotes the functional equivalent is known as mutS.; identified by similarity to EGAD:37607; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 DNA mismatch repair protein HexA	DNA mismatch repair protein MutS	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070 DNA mismatch repair protein MutS	DNA mismatch repair protein mutS	DNA mismatch repair protein	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein mutS	DNA mismatch repair protein MutS	InterProMatches:IPR005748; DNA mismatch repair recognition,Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: mismatch repair (GO:0006298) MutS	DNA mismatch repair protein MutS	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA mismatch repair protein	HexA DNA mismatch repair	DNA mismatch repair protein mutS	
RICPR00287	Putative sugar phosphate isomerase RP299	Ribose 5-phosphate isomerase B	RpiB	conserved hypothetical protein	Galactoside O-acetyltransferase	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 ribose 5-phosphate isomerase B	Ribose 5-phosphate isomerase, RpiB	identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689 ribose 5-phosphate isomerase B	Ribose-5-phosphate isomerase B	Ribose-5-phosphate isomerase B	Mb2492c, -, len: 162 aa. Equivalent to Rv2465c, len: 162 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 162 aa overlap). Probable isomerase (EC 5.-.-.-), equivalent to AAK46840|MT2540 PUTATIVE CARBOHYDRATE-PHOSPHATE ISOMERASE from Mycobacterium tuberculosis strain CDC1551 (159 aa). Equivalent to Q9CBY1|ML1484 POSSIBLE PHOSPHOPENTOSE ISOMERASE from M.  leprae (162 aa), FASTA scores: opt: 992, E(): 7.1e-59, (89.5% identity in 162 aa overlap). Also highly similar or similar to several diverse isomerases e.g.  Q9L206|SC8E4.02c PUTATIVE ISOMERASE from Streptomyces coelicolor (159 aa), FASTA scores: opt: 661, E(): 6.1e-37, (61.45% identity in 153 aa overlap); P47636|Y396_MYCGE|MG396 HYPOTHETICAL LACA/RPIB FAMILY PROTEIN from Mycoplasma genitalium (152 aa), FASTA scores: opt: 357, E(): 8.2e-17, (42% identity in 150 aa overlap); P53527|Y396_MYCPN|MPN595|MP247 HYPOTHETICAL LACA/RPIB FAMILY PROTEIN from Mycoplasma pneumoniae (152 aa), FASTA scores: opt: 340, E(): 1.1e-15, (38.6% identity in 145 aa overlap); P26592|LACB_STAAU galactose-6-phosphate isomerase from Staphylococcus aureus (171 aa), FASTA scores: opt: 296, E(): 1e-12, (35.4% identity in 158 aa overlap) and P37351|RPIB_ECOLI ribose 5-phosphate isomerase b from Escherichia coli (149 aa), FASTA scores: opt: 262, E(): 1.6e-10, (32.2% identity in 146 aa overlap); etc. COULD BELONG TO THE LACA/RPIB FAMILY. PROBABLE ISOMERASE	ribose 5-phosphate epimerase (pentose phosphate); Biological Process: carbohydrate metabolism (GO:0005975) Ribose/galactose isomerase	ribose 5-phosphate isomerase B	Ribose 5-phosphate isomerase RpiB	RIBOSE 5-PHOSPHATE ISOMERASE	Similar to rc||lacA sp|P39156|YWLF_BACSU rp||lacA sp|P53527|Y396_MYCPN sp|P47636|Y396_MYCGE sp|P37351|RPIB_ECOLI sp|P26423|LACA_STRMU; Ortholog to ERGA_CDS_04200 Ribose-5-phosphate isomerase	COG0698 ribose 5-phosphate isomerase similar to ZP_00210562.1; go_process: 0005975 ribose 5-phosphate isomerase	Ribose 5-phosphate isomerase B	COG0698 ribose 5-phosphate isomerase	Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB or B4090 SWALL:RPIB_ECOLI (SWALL:P37351) (149 aa) fasta scores: E(): 2.9e-21, 45.39% id in 141 aa, and to Bacteroides thetaiotaomicron ribose 5-phosphate isomerase B BT0346 SWALL:Q8AAW6 (EMBL:AE016927) (144 aa) fasta scores: E(): 4.2e-53, 85.41% id in 144 aa, and to Porphyromonas gingivalis W83 ribose 5-phosphate isomerase B, putative PG1747 SWALL:AAQ66750 (EMBL:AE017178) (145 aa) fasta scores: E(): 5e-36, 61.11% id in 144 aa putative ribose 5-phosphate isomerase	Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB or b4090 SWALL:RPIB_ECOLI (SWALL:P37351) (149 aa) fasta scores: E(): 1e-09, 32.21% id in 149 aa, and to Streptomyces coelicolor putative isomerase SCO2627 or SC8E4.02c SWALL:Q9L206 (EMBL:AL138661) (159 aa) fasta scores: E(): 1.8e-28, 57.43% id in 148 aa ribose 5-phosphate isomerase B	ribose-5-phosphate isomerase	Ribose 5-phosphate isomerase B	ribose 5-phosphate isomerase (ribose 5-phosphate epimerase)	ribose 5-phosphate isomerase	Similar to rc||lacA sp|P39156|YWLF_BACSU rp||lacA sp|P53527|Y396_MYCPN sp|P47636|Y396_MYCGE sp|P37351|RPIB_ECOLI sp|P26423|LACA_STRMU; Ortholog to ERWE_CDS_04260 Ribose-5-phosphate isomerase	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0698 ribose 5-phosphate isomerase B	identified by sequence similarity; putative; ORF located using Glimmer; GeneMark; Blastx; COG0698 ribose 5-phosphate isomerase B	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0698 ribose 5-phosphate isomerase B	
RICPR00288	OUTER MEMBRANE ANTIGENIC LIPOPROTEIN B	Membrane-bound metallopeptidase	Outer membrane antigenic lipoprotein B	Membrane-bound metallopeptidase	Membrane proteins related to metalloendopeptidase	peptidoglycan-specific endopeptidase, M23 family	Putative uncharacterized protein	Peptidoglycan-specific endopeptidase, M23 family protein	
RICPR00289	Thymidylate synthase thyX	Thymidylate synthase thyX	Predicted alternative thymidylate synthase	alternative thymidylate synthase	Similar to sp|Q92IL5|THYX_RICCN sp|Q9ZDM6|THYX_RICPR; Ortholog to ERGA_CDS_07060 Thymidylate synthase thyX	COG0207 ThyA thymidylate synthase THY1 protein	Similar to Streptomyces coelicolor hypothetical protein SCO5743 or SC9A10.07 SWALL:O86840 (EMBL:AL031260) (246 aa) fasta scores: E(): 4.4e-51, 59.82% id in 234 aa, and to Dictyostelium discoideum Thy1 protein ThyA or Thy1 SWALL:THY1_DICDI (SWALL:P15808) (260 aa) fasta scores: E(): 4.5e-14, 32.36% id in 207 aa conserved hypothetical protein	Hypothetical protein	thymidylate synthase-complementing family protein (Pfam)	Similar to sp|Q92IL5|THYX_RICCN sp|Q9ZDM6|THYX_RICPR; Ortholog to ERWE_CDS_07140 Thymidylate synthase thyX	Flavin-dependent Thymidylate synthase ThyX	Thymidylate synthase (FAD)	Thymidylate synthase (FAD)	thymidylate synthase, flavin-dependent identified by similarity to SP:Q9C4Y9; match to protein family HMM PF02511; match to protein family HMM TIGR02170	Thymidylate synthase, flavin-dependent	Thymidylate synthase (FAD) PFAM: thymidylate synthase complementing protein ThyX: (3.7e-57) KEGG: ttj:TTHA1096 thymidylate synthase-complementing protein (Thy1), ev=3e-41, 48% identity	thymidylate synthase, flavin-dependent identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170	Thymidylate synthase thyX	Thymidylate synthase	thymidylate synthase, flavin-dependent identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170	thymidylate synthase, flavin-dependent KEGG: jan:Jann_1091 thymidylate synthase (FAD) TIGRFAM: thymidylate synthase, flavin-dependent PFAM: thymidylate synthase complementing protein ThyX	Alternative thymidylate synthase	thymidylate synthase, flavin-dependent TIGRFAM: thymidylate synthase, flavin-dependent PFAM: thymidylate synthase complementing protein ThyX KEGG: nse:NSE_0163 thymidylate synthase, flavin-dependent	thymidylate synthase, flavin-dependent KEGG: sco:SCO5743 thymidylate synthase TIGRFAM: thymidylate synthase, flavin-dependent PFAM: thymidylate synthase complementing protein ThyX	Thymidylate synthase, flavin/dependent	Alternative thymidylate synthase	Thymidylate synthase	FAD-dependent thymidylate synthase	
RICPR00290	Protein tolB	Residues 1 to 431 of 431 are 99 pct identical to residues 1 to 431 of a 439 aa protein pdb: 1C5K Chain A, The Structure Of Tolb, An Essential Component Of The Tol- Dependent Translocation System And Its Interactions With The Translocation Domain Of Colicin E9	Protein tolB	Protein tolB	Protein tolB	Protein tolB	Protein tolB	Protein tolB	TolB protein	conserved gene TolB colicin import protein	TolB protein	identified by match to protein family HMM PF04052 TolB, putative	Protein tolB	Protein tolB	Tol-Pal system beta propeller repeat protein TolB	Protein tolB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark TolB	tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains)	similar to Salmonella typhi CT18 tolB protein precursor tolB protein precursor	Similar to Chlamydia pneumoniae TolB protein SWALL:TOLB_CHLPN (SWALL:Q9Z7C4) (431 aa) fasta scores: E(): 2.2e-112, 64.47% id in 425 aa, and to Brucella melitensis TolB protein SWALL:Q93TG4 (EMBL:AF358662) (443 aa) fasta scores: E(): 3.5e-15, 27.39% id in 303 aa, and to Haemophilus influenzae TolB protein SWALL:TOLB_HAEIN (SWALL:P44677) (427 aa) fasta scores: E(): 4.8e-09, 26.6% id in 312 aa putative TolB protein	Protein tolB	similar to BR1697, tolB protein TolB, tolB protein	Protein tolB	Protein tolB	Protein tolB	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter tolerance to colicins E2, E, A, and K, required for OM integrity	COG0823 TolB periplasmic component of the Tol biopolymer transport system TolB protein precursor	Protein tolB	periplasmic component; COG0823 Tol biopolymer transport system	
RICPR00291	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma factor	RNA polymerase sigma-32 factor	conserved gene RNA polymerase sigma-32 factor RpoH	RNA polymerase sigma-32 factor	RNA polymerase sigma factor	IPR000943: Sigma-70 factor family; IPR007627: Sigma-70 region 2; IPR007630: Sigma-70 region 4 sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock proteins induced by cytoplasmic stress	similar to Salmonella typhi CT18 RNA polymerase sigma-32 factor RNA polymerase sigma-32 factor	similar to BR1650, RNA polymerase sigma-70 factor family protein RNA polymerase sigma-70 factor family protein	RNA polymerase sigma factor	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type f : factor sigma H (sigma 32) factor of RNA polymerase	DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) RpoD protein	RNA polymerase sigma factor	DNA-directed RNA polymerase sigma 32 subunit	RNA polymerase sigma factor	identified by similarity to SP:P00580; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392 RNA polymerase sigma-32 factor	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392 RNA polymerase sigma-32 factor	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392 transcription initiation factor sigma 32	Sigma-70 region 4	Sigma-70 region 2:Sigma-70 region 4	RNA polymerase sigma-32 factor	RpoD family protein	regulation of proteins induced at high temperatures; Code: K; COG: COG0568 RNA polymerase, sigma(32) factor	Sigma-70 region 2:Sigma-70 region 4	Sigma-70 factor family:Sigma-70 region 2:Sigma-70 region 4	RNA polymerase, sigma (32) factor	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2841288, 6387714; Product type f : factor RNA polymerase sigma-32 factor (Heat shock regulatory protein F33.4)	Gene neighborhood linkage with pseudouridine synthase; RpoH1 is sigma 37 and RpoH2 (RSP_0601) is sigma 38. Citation: PMID 9422586: Karls,R.K. et al.(1998) J.  Bacteriol. 180:10-19 PMID 9422585: MacGregor et al.(1998) J.Bacteriol. 180:1-9 sigma factor RpoH1 (Sigma-32 group, heat shock)	
RICPR00292	Cytochrome c oxidase assembly protein ctaG	Probable cytochrome c oxidase assembly transmembrane protein	cytochrome c oxidase assembly protein	conserved gene cytochrome c oxidase, assembly transmembrane protein CoxG	cytochrome c oxidase assembly protein	identified by similarity to SP:P56940; match to protein family HMM PF04442 cytochrome c oxidase assembly protein CtaG	Cytochrome C oxidase assembly transmembrane protein	Cytochrome-c oxidase assembly protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cytochrome C oxidase assembly protein ctaG	Cytochrome oxidase assembly factor	Cytochrome C oxidase assembly protein ctaG	Similar to sp|Q92IL2|COXZ_RICCN sp|Q9ZDM3|COXZ_RICPR; Ortholog to ERGA_CDS_08460 Cytochrome C oxidase assembly protein ctaG	COG3175 COX11 cytochrome oxidase assembly factor cytochrome c oxidase assembly protein	Putative cytochrome c oxidase assembly protein	cytochrome c oxidase assembly protein, putative	Cytochrome c oxidase assembly protein	CoxG Cytochrome c oxidase assembly protein	go_component: mitochondrial inner membrane [goid 0005743]; go_process: aerobic respiration [goid 0009060] cytochrome c oxidase assembly protein cox11	probable cytochrome C oxidase assembly transmembrane protein	cytochrome C oxidase assembly protein ctaG	identified by similarity to SP:P56940; match to protein family HMM PF04442 cytochrome c oxidase assembly protein	Cytochrome c oxidase assembly protein CtaG/Cox11	go_process: aerobic respiration [goid 0009060] cytochrome C oxidase assembly protein, putative	Similar to sp|Q92IL2|COXZ_RICCN sp|Q9ZDM3|COXZ_RICPR; Ortholog to ERWE_CDS_08550 Cytochrome C oxidase assembly protein ctaG	identified by match to protein family HMM PF04442 cytochrome c oxidase assembly protein, CtaG/Cox11 family	identified by similarity to SP:P56940; match to protein family HMM PF04442 cytochrome c oxidase assembly protein, putative	Cytochrome c oxidase assembly protein CtaG/Cox11	Cytochrome c oxidase assembly protein CtaG/Cox11	Cytochrome c oxidase assembly protein CtaG/Cox11	
RICPR00293	Putative uncharacterized protein RP305	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical exported protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00294	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	Residues 1 to 383 of 383 are 99 pct identical to residues 1 to 383 of a 383 aa protein from Escherichia coli K12 ref: NP_415651.1 orf, conserved hypothetical protein	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	Similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase hypothetical protein	conserved gene tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase	Similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase hypothetical protein	tRNA-specific 2-thiouridylase mnmA	tRNA-specific 2-thiouridylase mnmA	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase	tRNA-specific 2-thiouridylase mnmA	TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase	tRNA-specific 2-thiouridylase mnmA	identified by similarity to SP:O25893; match to protein family HMM PF03054; match to protein family HMM TIGR00420 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	tRNA-specific 2-thiouridylase mnmA	tRNA 5-methylaminomethyl-2-thiouridylate- methyltransferase protein	tRNA-specific 2-thiouridylase mnmA	Mb3050c, trmU, len: 367 aa. Equivalent to Rv3024c, len: 367 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 367 aa overlap). Probable trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61), equivalent to O33099|TRMU_MYCLE|ML1707|MLCB637.07 PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE from Mycobacterium leprae (358 aa), FASTA scores: opt: 2033, E(): 5.5e-116, (85.45% identity in 357 aa overlap).  Also highly similar to others e.g.  O86583|TRMU_STRCO|SC2A11.22 from Streptomyces coelicolor (376 aa), FASTA scores: opt: 1336, E(): 1e-73, (56.9% identity in 369 aa overlap); BAB49856|MLR2824 from Rhizobium loti (378 aa), FASTA scores: opt: 826, E(): 8.3e-43, (42.35% identity in 359 aa overlap); Q9ZDM1|TRMU_RICPR|RP306 from Rickettsia prowazekii (358 aa), FASTA scores: opt: 800, E(): 3e-41, (40.1% identity in 359 aa overlap); etc. BELONGS TO THE TRMU FAMILY. PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU	InterProMatches:IPR004506; Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033) tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	
RICPR00295	CATIONIC AMINO ACID TRANSPORTER-1	Probable amino-acid transporter transmembrane protein	Cationic amino acid transporter-1	Amino acid tranporter	transcript_id=ENSDNOT00000000145	Cationic amino acid transporter-1	Amino acid permease-associated region	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: bcn:Bcen_2442 amino acid permease-associated region	transcript_id=ENSMLUT00000014630	amino acid permease identified by match to protein family HMM PF00324	amino acid permease	Cationic amino acid transporter-1	Cationic amino acid transporter-1	Amino acid permease-associated region	transcript_id=ENSOPRT00000012868	Cationic amino acid transporter-1	Cationic amino acid transporter-1	Putative amino acid transport protein	Putative amino acid transporter	amino acid permease	Putative uncharacterized protein	Amino acid permease-associated region	Amino acid permease-associated region	Amino acid permease-associated region	Cationic amino acid transporter-1	Amino acid permease family protein	Amino acid permease family protein	Putative amino acid transporter	
RICPR00296	Histidyl-tRNA synthetase	Residues 1 to 424 of 424 are 99 pct identical to residues 1 to 424 of a 424 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289067.1 histidine tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	conserved gene histidyl tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidyl-tRNA synthetase	Histidyl-tRNA synthetase	histidine-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM TIGR00442 histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Histidyl-tRNA synthetase	Mb2611c, hisS, len: 423 aa. Equivalent to Rv2580c, len: 423 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 423 aa overlap). Probable hisS, histidyl-tRNA synthetase (EC 6.1.1.21), equivalent to P46696|SYH_MYCLE|HISS|ML0494|MLCB1259.12|B1177_C3_248 HISTIDYL-TRNA SYNTHETASE from Mycobacterium leprae (427 aa), FASTA scores: opt: 2380, E(): 2.1e-131, (85.85% identity in 417 aa overlap). Also highly similar to many e.g. Q9KXP2|HISS from Streptomyces coelicolor (425 aa), FASTA scores: opt: 1542, E(): 1.4e-82, (56.0% identity in 418 aa overlap); O32422|SYH_STAAU|HISS from Staphylococcus aureus (420 aa), FASTA scores: opt: 1135, E(): 7.4e-59, (44.9% identity in 412 aa overlap); P04804|SYH_ECOLI|HISS|B2514 from Escherichia coli strain K12 (423 aa), FASTA scores: opt: 1099, E(): 9.4e-57, (43.9% identity in 417 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO CLASS-II AMINOACYL-TRNA SYNTHETASE FAMILY. PUTATIVE HISTIDYL-TRNA SYNTHETASE HISS (HISTIDINE--TRNA LIGASE) (HISRS) (HISTIDINE--TRANSLASE)	InterProMatches:IPR004516; Molecular Function: histidine-tRNA ligase activity (GO:0004821), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: histidyl-tRNA aminoacylation (GO:0006427) histidyl-tRNA synthetase	

RICPR00297	TOLQ PROTEIN	Residues 1 to 230 of 230 are 99 pct identical to residues 1 to 230 of a 230 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286465.1 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins	TolQ colicin import protein	MotA/TolQ/ExbB proton channel family	TolQ protein	Probable tolq-related transport transmembrane protein	TolQ protein	Similar to TolQ, involved in the tonB-independent uptake of proteins hypothetical protein	conserved gene biopolymer transport protein TolQ	Similar to TolQ, involved in the tonB-independent uptake of proteins hypothetical protein	identified by similarity to SP:P05828; match to protein family HMM PF01618 proton transporter TolQ	TolQ-related transport transmembrane protein	TolQ protein	Protein TolQ	TolQ protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark TolQ	IPR002898: MotA/TolQ/ExbB proton channel tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm	similar to Salmonella typhi CT18 TolQ protein TolQ protein	similar to BR1700, tolQ protein TolQ, tolQ protein	TolQ protein	Inner membrane tolQ protein	TolQ colicin import protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type m : membrane component tolerance to group A colicins, single-stranded DNA filamentous phage, required for OM integrity	COG0811 TolQ biopolymer transport protein; go_component: 0016020 TolQ protein	TolQ protein	COG0811 TolQ biopolymer transport proteins	TolQ protein	Similar to: HI0385, TOLQ_HAEIN TolQ	Biopolymer transport proteins TolQ protein	
RICPR00298	TOLR PROTEIN	Biopolymer transport exbd-related transmembrane protein	Residues 1 to 142 of 142 are 100 pct identical to residues 1 to 142 of a 142 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286466.1 putative inner membrane protein, involved in the tonB-independent uptake of group A colicins	TolR protein	Similar to TolR proteins hypothetical protein	conserved gene biopolymer transport protein TolR	Similar to TolR proteins hypothetical protein	TolR protein	TolR protein	identified by similarity to SP:P18784; match to protein family HMM PF02472 TonB system transport protein ExbD, putative	Protein TolR	TolR protein	tol protein, role in outer membrane integrity, uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasm	similar to Salmonella typhi CT18 tolR protein tolR protein	similar to BR1699, TonB system transport protein, ExbD/TolR family TonB system transport protein, ExbD/TolR family	TolR protein	Putative biopolymer transport exbD-like protein 1	N: COG0848 ExbD biopolymer transport protein; go_component: 0016020 TolR protein	TolR protein	COG0848 TolR biopolymer transport protein	TolR protein	Similar to: HI0384, TOLR_HAEIN TolR	Biopolymer transport protein TolR	Similar to TOLR_ECOLI TolR protein from Escherichia coli (142 aa). FASTA: opt: 303 Z-score: 379.2 bits: 76.1 E(): 3.2e-13 Smith-Waterman score: 303; 39.259identity in 135 aa overlap. TolR protein	Biopolymer transport protein	Tol protein, role in outer membrane integrity	ExbD/TolR family protein	identified by similarity to SP:P05829; match to protein family HMM PF02472 tolR protein	biopolymer transport protein	

RICPR00300	PROLINE/BETAIN TRANSPORTER	major facilitator family transporter identified by match to protein family HMM PF00083; match to protein family HMM PF07690	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	proline/betaine transporter	Major facilitator superfamily MFS_1	Putative uncharacterized protein	Putative uncharacterized protein	Proline/betaine transporter	
RICPR00300	PROLINE/BETAIN TRANSPORTER	major facilitator family transporter identified by match to protein family HMM PF00083; match to protein family HMM PF07690	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	proline/betaine transporter	Major facilitator superfamily MFS_1	Putative uncharacterized protein	Putative uncharacterized protein	Proline/betaine transporter	
RICPR00301	ALKALINE PROTEASE SECRETION PROTEIN APRE	Similar to Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 7.3e-11, 21.98% id in 423 aa, and to Actinobacillus pleuropneumoniae RTX-III toxin determinant D ApxIIID or ClyIIID or RtxD SWALL:RT3D_ACTPL (SWALL:Q08633) (477 aa) fasta scores: E(): 3.9e-08, 23.91% id in 460 aa, and to Escherichia coli hemolysin secretion protein D, plasmid HlyD SWALL:HLYD_ECOLI (SWALL:P06739) (478 aa) fasta scores: E(): 5.2e-08, 23.28% id in 378 aa putative hemolysin secretion transport system membrane protein	probable alkaline protease secretion protein	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 HlyD family secretion protein	Type I secretion membrane fusion protein, HlyD family Alkaline protease secretion protein AprE	type I secretion membrane fusion protein, HlyD	Type I secretion membrane fusion protein, HlyD	type I secretion membrane fusion protein, HlyD family identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843	metalloprotease secretion protein	Alkaline protease secretion protein AprE	Hypothetical protein expD2. putative HlyD family secretion protein similarity:fasta; with=UniProt:P96438 (EMBL:C95953); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein expD2.; length=Hypothetical protein; id 32.710; 428 aa overlap; query 24-448; subject 52-472 similarity:fasta; with=UniProt:Q8UAQ0 (EMBL:C98318); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Secretion protein, HlyD family.; length=497; id 80.778; 437 aa overlap; query 13-449; subject 61-497	Type I secretion membrane fusion protein, HlyD TIGRFAM: Type I secretion membrane fusion protein, HlyD: (2.4e-112) PFAM: secretion protein HlyD: (8.3e-33) KEGG: rru:Rru_B0040 type I secretion membrane fusion protein, HlyD, ev=3e-78, 39% identity	type I secretion membrane fusion protein, HlyD family identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843	Type I secretion membrane fusion protein, HlyD	Type I secretion membrane fusion protein, HlyD	type I secretion membrane fusion protein, HlyD family TIGRFAM: type I secretion membrane fusion protein, HlyD family PFAM: secretion protein HlyD family protein KEGG: rru:Rru_B0040 type I secretion membrane fusion protein, HlyD	type I secretion membrane fusion protein, HlyD family TIGRFAM: type I secretion membrane fusion protein, HlyD family PFAM: secretion protein HlyD family protein KEGG: mes:Meso_2600 type I secretion membrane fusion protein, HlyD family	Type I secretion membrane fusion protein, HlyD family	secretion protein, putative	type I secretion membrane fusion protein, HlyD family TIGRFAM: type I secretion membrane fusion protein, HlyD family PFAM: secretion protein HlyD KEGG: mlo:mll2582 metalloprotease transporter	Type I secretion system membrane fusion protein	Probable ABC-type transport system, membrane fusion efflux protein component	Type I secretion membrane fusion protein, HlyD family	Type I secretion membrane fusion protein, HlyD family	Alkaline protease secretion protein AprE	Type I secretion membrane fusion protein, HlyD family	HlyD family secretion protein	Alkaline protease secretion protein AprE	Alkaline protease secretion protein AprE	
RICPR00302	ALKALINE PROTEASE SECRETION ATP-BINDING PROTEIN APRD	ATP-binding protein PrtB	ABC-type protease secretion system, ATPase and permease component, AprD	Putative uncharacterized protein gbs1785	ABC transporter protein, fused permease and ATP binding domains	Similar to rp||aprD sp|Q03024|APRD_PSEAE sp|P23596|PRTD_ERWCH; Ortholog to ERGA_CDS_06490 Alkaline protease secretion ATP-binding protein AprD	conserved family - putative alkaline protease secretion ATP-binding protein hypothetical protein	Transport protein HasD, putative	putative ABC transporter protein	Similar to rp||aprD sp|Q03024|APRD_PSEAE sp|P23596|PRTD_ERWCH; Ortholog to ERWE_CDS_06580 Alkaline protease secretion ATP-binding protein AprD	ABC transporter Alkaline protease secretion ATP-binding protein AprD	identified by similarity to SP:P94366; match to protein family HMM PF00005; match to protein family HMM PF00664 ABC transporter, ATP-binding protein CydD	type I secretion system ATPase, PrtD	Type I secretion system ATPase, PrtD	ABC protein exporter, fused ATPase and inner membrane subunits	type I secretion system ATPase identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842	Type I secretion system ATPase, PrtD	Type I secretion system ATPase, PrtD	Alkaline protease secretion ATP-binding protein AprD	Type I secretion system ATPase, PrtD	Type I secretion system ATPase, PrtD KEGG: rru:Rru_B0039 type I secretion system ATPase, PrtD, ev=1e-152, 50% identity TIGRFAM: Type I secretion system ATPase, PrtD: (7.7e-257) PFAM: ABC transporter, transmembrane region: (3.5e-12) ABC transporter related: (1.5e-59) SMART: ATPase: (1.8e-19)	Type I secretion system ATPase, PrtD	putative protein transport protein similar to hasD (PP2560) [Pseudomonas putida KT2440], rspD (mll1027) [Mesorhizobium loti] and SMc04207[Sinorhizobium meliloti] Similar to swissprot:Q88JT7 Putative location:bacterial inner membrane Psort-Score: 0.2529; go_component: membrane [goid 0016020]; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: transport [goid 0006810]	Type I secretion system ATPase, PrtD	ABC transporter protein	type I secretion system ATPase identified by similarity to GB:AAD09853.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842	ABC transporter, permease/ATP-binding protein identified by match to protein family HMM PF00005; match to protein family HMM PF00664	Type I secretion system ATPase, PrtD	Type I secretion system ATPase, PrtD	
RICPR00303	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Residues 1 to 337 of 337 are 99 pct identical to residues 1 to 337 of a 337 aa protein from Escherichia coli K12 ref: NP_416822.1 putative PTS system enzyme II A component	Aspartate semialdehyde dehydrogenase	Putative aspartate-semialdehyde dehydrogenase	aspartate-semialdehyde dehydrogenase	Aspartate semialdehyde dehydrogenase	USG-1 protein	Aspartate-semialdehyde dehydrogenase	conserved gene aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	aspartate beta-semialdehyde dehydrogenese	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-B-semialdehyde dehydrogenase	Aspartate semialdehyde dehydrogenase	identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 aspartate-semialdehyde dehydrogenase	Aspartate-B-semialdehyde dehydrogenase protein	InterProMatches:IPR005986; Molecular Function: aspartate-semialdehyde dehydrogenase activity (GO:0004073), Biological Process: methionine biosynthesis (GO:0009086), Biological Process: threonine biosynthesis (GO:0009088) aspartate-semialdehyde dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark aspartate semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	putative aspartate-semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	similar to Salmonella typhi CT18 putative semialdehyde dehydrogenase putative semialdehyde dehydrogenase	Aspartate-semialdehyde dehydrogenase	similar to BRA0887, aspartate-semialdehyde dehydrogenase Asd, aspartate-semialdehyde dehydrogenase	
RICPR00304	Uncharacterized HIT-like protein RP317	Residues 7 to 125 of 125 are 99 pct identical to residues 1 to 119 of a 119 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287237.1 orf, conserved hypothetical protein	Uncharacterized HIT-like protein CT_385	Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases	HIT (Histidine triad) family	YcfF protein	Hit-like	conserved hypothetical protein	Similar to histidine triad-like protein YcfF of Escherichia coli	Similar to HIT( Histidine triad nucleotide-binding protein) family protein hypothetical protein	conserved gene HIT family hydrolase	Similar to HIT( Histidine triad nucleotide-binding protein) family protein hypothetical protein	Cell-cycle regulation histidine triad protein	Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)	protein kinase C inhibitor	identified by match to protein family HMM PF01230 HIT family protein	Probable HIT family protein	cell cycle regulation histidine triad (HIT) protein	Putative uncharacterized protein	Histidine triad protein	HIT family hydrolase	identified by match to protein family HMM PF01230 HIT family protein	cell-cycle regulation histidine triad, Hit family	HIT family hydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark histidine triad protein homolog (HIT-like protein)	Probable HIT family protein	Putative uncharacterized protein yuhI	IPR001310: Histidine triad (HIT) protein putative protein kinase C inhibitor	HIT family hydrolase	
RICPR00305	Uncharacterized protein RP318	conserved hypothetical protein	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00306	ATP-dependent protease hslV	Heat shock protein hslV	ATP-dependent protease hslV	Residues 1 to 176 of 176 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290563.1 heat shock protein hslVU, proteasome-related peptidase subunit	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	Peptidase component of the HslUV protease (Heat shock protein)	conserved gene heat shock protein, HslVU, proteasome-related peptidase subunit	Peptidase component of the HslUV protease (Heat shock protein)	ATP-dependent protease hslV	identified by similarity to EGAD:21508; match to protein family HMM PF00227 heat shock protein HslVU, ATPase subunit HslV	identified by similarity to SP:P43772; match to protein family HMM PF00227 ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	ATP-dependent protease hslV	identified by similarity to SP:P39070; match to protein family HMM PF00227 ATP-dependent protease HslVU, HslV subunit	Heat shock protease HslVU	N-terminal serine protease; InterProMatches:IPR001353; Molecular Function: endopeptidase activity (GO:0004175), Cellular Component: proteasome core complex (sensu Eukarya) (GO:0005839), Biological Process: ubiquitin-dependent protein catabolism (GO:0006511) two-component ATP-dependent protease	ATP-dependent protease HslVU (ClpYQ) peptidase subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent HslUV protease peptidase subunit HslV	HslV ATP-dependent heat shock protease	Heat shock protein HslV	IPR001353: Multispecific proteasome protease peptidase component of the HslUV protease	ATP-dependent protease HslV, peptidase subunit	similar to Salmonella typhi CT18 heat shock protein heat shock protein	
RICPR00307	ATP-dependent hsl protease ATP-binding subunit hslU	Heat shock protein hslU	ATP-dependent hsl protease ATP-binding subunit hslU	Residues 1 to 443 of 443 are 100 pct identical to residues 1 to 443 of a 443 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290562.1 heat shock protein hslVU, ATPase subunit, homologous to chaperones	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit HslU	conserved gene ATP dependent Hsl protease, ATP binding subunit	ATP-dependent hsl protease ATP-binding subunit HslU	ATP-dependent hsl protease ATP-binding subunit hslU	identified by similarity to EGAD:14430; match to protein family HMM PF00004; match to protein family HMM TIGR00390 heat shock protein HslVU, ATPase subunit HslU	identified by match to protein family HMM TIGR00390 ATP-dependent hsl protease, ATP-binding subunit HslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	ATP-dependent hsl protease ATP-binding subunit hslU	identified by similarity to SP:P39778; match to protein family HMM PF00004; match to protein family HMM TIGR00390 heat shock protein HslVU, ATPase subunit HslU	Heat shock protein HslVU, ATPase subunit HslU	N-terminal serine protease; InterProMatches:IPR004491; Molecular Function: chaperone activity (GO:0003754), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Cellular Component: HslUV protease complex (GO:0009376), Molecular Function: HslUV protease activity (GO:0009377 two-component ATP-dependent protease	ATP-dependent protease HslVU (ClpYQ) ATPase subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent HslUV protease ATP-binding subunit HslU	HslU ATP-dependent hsl protease ATP-binding subunit HslU ATP dependant protease, ATP binding unit, heatshock protein	Heat shock protein HslU	ATPase component of the HslUV protease	ATP-dependent protease HslU, ATPase subunit	similar to Salmonella typhi CT18 heat shock protein heat shock protein	
RICPR00308	Lipid-A-disaccharide synthase	Lipid-a-disaccharide synthase protein	Residues 1 to 337 of 337 are 99 pct identical to residues 46 to 382 of a 382 aa protein from Escherichia coli K12 ref: NP_414724.1 tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	lipid A disaccharide synthase	identified by similarity to SP:P10441; match to protein family HMM PF02684; match to protein family HMM TIGR00215 lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid A disaccharide synthetase	identified by similarity to GB:AAP77407.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215 lipid-A-disaccharide synthetase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A disaccharide synthase	tetraacyldisaccharide-1-P	similar to Salmonella typhi CT18 lipid-A-disaccharide synthase lipid-A-disaccharide synthase	Lipid A disaccharide synthetase	similar to BR1149, lipid A disaccharide synthase LpxB, lipid A disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-a-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthase	Lipid-A-disaccharide synthetase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme lipid A-disaccharide synthase	Lipid A disaccharide synthase	lipid-A-disaccharide synthase	
RICPR00309	Putative uncharacterized protein RP322	hypothetical protein	Putative uncharacterized protein	Residues 1 to 340 of 340 are 99 pct identical to residues 1 to 340 of a 340 aa protein from Escherichia coli K12 ref: NP_415615.1 putative thymidylate kinase	Putative exported protein	DUF175	Putative aminodeoxychorismate lyase protein	Similar to putative exported protein YceG of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	conserved gene, also probably aminodeoxychorismate lyase periplasmic solute-binding protein	Similar to conserved hypothetical protein hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR003770: Protein of unknown function DUF175 putative periplasmic solute-binding protein	similar to Salmonella typhi CT18 putative secreted protein putative secreted protein	similar to BR0462, conserved hypothetical protein TIGR00247 conserved hypothetical protein TIGR00247	Putative uncharacterized protein	Putative uncharacterized protein	Putative exported protein	Putative periplasmic protein	Hypothetical protein	identified by similarity to OMNI:NTL01LI1523; match to protein family HMM PF02618; match to protein family HMM TIGR00247 conserved hypothetical protein TIGR00247	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative periplasmic solute-binding protein	Putative uncharacterized protein	COG1559 conserved hypothetical protein	hypothetical protein	Predicted periplasmic solute-binding protein Hypothetical protein	
RICPR00310	Protein cyaY	CyaY	Protein implicated in iron transport	Putative iron-binding and oxidizing protein	Protein cyaY	CyaY	Frataxin-like protein	Protein cyaY	frataxin family protein	Frataxin-like protein	CyaY protein	Protein cyaY	
RICPR00311	Probable biotin transporter bioY	Putative uncharacterized protein	biotin biosynthesis protein BioY	biotin synthase	Biotin biosynthesis protein BioY	Putative uncharacterized protein ydbE	Uncharacterized conserved protein	identified by match to protein family HMM PF02632 BioY family protein	Putative Biotin synthase	biotin synthase	BioY family (Pfam) probable biotin synthase	bioY family protein	Putative uncharacterized protein	hypothetical protein, similar to biotin biosynthesis protein	BioY family protein	identified by match to protein family HMM PF02632 bioY family protein	Putative biotin synthesis protein	biotin synthesis BioY protein	BioY family protein	BioY family protein identified by match to protein family HMM PF02632	BioY protein	BioY-family membrane protein	BioY family protein identified by match to protein family HMM PF02632	conserved hypothetical protein COG1268, pfam02632	BioY protein	BioY protein PFAM: BioY protein: (1.4e-37) KEGG: ttj:TTHA0904 biotin biosynthesis protein BioY, ev=2e-42, 53% identity	biotin synthase EC 2.8.1.6	BioY protein	BioY protein PFAM: BioY protein KEGG: mba:Mbar_A0586 biotin synthesis BioY protein	

RICPR00312	Glutamyl-tRNA synthetase 1	identified by similarity to SP:P22249; match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-and glutaminyl-tRNA synthetase	similar to BR1016, glutamyl-tRNA synthetase GltX-1, glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase 1	Similar to sp|Q92IH2|SYE1_RICCN sp|Q9ZDK3|SYE1_RICPR; Ortholog to ERGA_CDS_07930 Glutamyl-tRNA synthetase 1	COG0008 GlnS glutamyl- and glutaminyl-tRNA synthetases glutamate tRNA ligase	COG0008 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Similar to sp|Q92IH2|SYE1_RICCN sp|Q9ZDK3|SYE1_RICPR; Ortholog to ERWE_CDS_08020 Glutamyl-tRNA synthetase 1	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase, class Ic:Aminoacyl-tRNA synthetase, class I:Glutamyl-tRNA synthetase bacterial/mitochondrial	Citation: PMID: 12421319 Mol Microbiol. 2002 Nov;46(4):1157-67, PMID: 10348873 J Bacteriol. 1999 Jun;181(11):3582-6 Glutamyl-tRNA synthetase, class Ic	Glutamyl-tRNA synthetase 1	glutamyl-tRNA synthetase	glutamyl-tRNA synthetase identified by similarity to SP:P45631; match to protein family HMM PF00749	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase TIGRFAM: glutamyl-tRNA synthetase: (1.2e-88) PFAM: glutamyl-tRNA synthetase, class Ic: (7.9e-106) KEGG: sil:SPO0430 glutamyl-tRNA synthetase, ev=0.0, 85% identity	glutamyl-tRNA synthetase identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464	Glutamyl-tRNA synthetase	glutamyl-tRNA synthetase	glutamyl-tRNA synthetase COG0008 Glutamyl- and glutaminyl-tRNA synthetases	Glutamyl-tRNA synthetase 1	
RICPR00313	DNA topoisomerase 1	DNA topoisomerase I	DNA topoisomerase	Residues 15 to 879 of 879 are 99 pct identical to residues 1 to 865 of a 865 aa protein from Escherichia coli K12 ref: NP_415790.1 DNA topoisomerase type I, omega protein	DNA Topoisomerase I-Fused to SWI Domain	DNA topoisomerase	DNA topoisomerase 1	DNA topoisomerase 1	DNA topoisomerase I (omega-protein)	DNA topoisomerase	DNA topoisomerase I	conserved gene DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase	identified by similarity to EGAD:20536; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase I	DNA topoisomerase I	identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase I	DNA topoisomerase 1	DNA topoisomerase I topA-like protein	DNA topoisomerase I	DNA topoisomerase	identified by similarity to SP:P39814; match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051 DNA topoisomerase I	DNA topoisomerase	DNA topoisomerase I	DNA topoisomerase 1	

RICPR00314	THIOREDOXIN PEROXIDASE 1	Thio-Specific Antioxidant (TSA) Peroxidase	Putative alkyl hydroperoxide reductase subunit c	AhpC protein	Alkyl hydroperoxide reductase, small subunit	alkyl hydroperoxide reductase	conserved gene peroxynitrite reductase, AhpC/Tsa family	alkyl hydroperoxide reductase	thioredoxin peroxidase	Probable peroxidase	Peroxiredoxin, AhpC/TSA family	identified by similarity to OMNI:NTL01CJ00310; match to protein family HMM PF00578 antioxidant, AhpC/Tsa family	Alkyl hydroperoxide reductase C22 protein	putative thiol-alkyl hydroperoxide reductase	Peroxiredoxin	similar to Salmonella typhi CT18 probable peroxidase probable peroxidase	Similar to Chlamydia pneumoniae thio-specific antioxidant AhpC or cpn0778 SWALL:Q9Z7C8 (EMBL:AE001659) (196 aa) fasta scores: E(): 1.9e-57, 72.91% id in 192 aa, and to Homo sapiens peroxiredoxin 2 PrdX2 or TdpX1 or NkeFB SWALL:PDX2_HUMAN (SWALL:P32119) (198 aa) fasta scores: E(): 3.9e-38, 49.73% id in 191 aa putative alkyl hydroperoxide reductase	Alkyl hydroperoxide reductase TsaA	Probable peroxiredoxin	Putative alkyl hydroperoxide reductase subunit C	Similar to rp||tdpX1 rc||tdpX1 sp|P21762|TSAA_HELPY sp|P56876|TSAA_HELPJ; Ortholog to ERGA_CDS_03510 Probable peroxiredoxin (26 kDa antigen)	conserved Archaeal 2-cys peroxiredoxin	COG0450 AhpC peroxiredoxin similar to NP_360088.1 thioredoxin peroxidase 1	Antioxidant, AhpC/Tsa family protein	alkyl hydroperoxide reductase C22 protein	Similar to: TSAA_BUCAP probable peroxiredoxin	Similar to Hordeum vulgare 2-cys peroxiredoxin Bas1, chloroplast precursor SWALL:BAS1_HORVU (SWALL:Q96468) (210 aa) fasta scores: E(): 5.3e-21, 48.78% id in 205 aa, and to Bacteroides fragilis thioredoxin peroxidase Tpx SWALL:Q938I6 (EMBL:AY050657) (210 aa) fasta scores: E(): 7.6e-87, 100% id in 210 aa, and to putative thioredoxin peroxidase	Peroxiredoxin AhpC protein	Antioxidant, AhpC/Tsa family	
RICPR00315	Putative uncharacterized protein RP328	Residues 1 to 305 of 305 are 100 pct identical to residues 1 to 305 of a 305 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286238.1 putative protease	Putative uncharacterized protein	predicted membrane protease subunit, stomatin/prohibitin homolog	Probable membrane protease subunit transmembrane protein	Similar to putative protease YbbK of Escherichia coli	Putative uncharacterized protein lp_0332	Membrane protease protein family	identified by match to protein family HMM PF01145 SPFH domain/band 7 family protein	Probable stomatin/Mec-2 family protein	Putative uncharacterized protein	Putative uncharacterized protein	Membrane protease subunit protein	Uncharacterized protein Rv1488/MT1533.2	Mb1524, -, len: 381 aa. Equivalent to Rv1488, len: 381 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 381 aa overlap). Possible exported conserved protein; contains possible N-terminal signal sequence. Similar to YBBK_ECOLI|P77367 hypothetical protein ybbK from Escherichia coli (305 aa), FASTA scores: opt: 716, E(): 0, (37.1% identity in 307 aa overlap).  Similar to stomatin-like proteins e.g. AF065260|AF065260_1 Clostridium difficile (320 aa), FASTA scores: opt: 767, E(): 0, (42.3% identity in 307 aa overlap). POSSIBLE EXPORTED CONSERVED PROTEIN	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	putative membrane protein	Putative uncharacterized protein ygbE	IPR001972: Stomatin putative inner membrane protein	similar to BRA0075, SPFH domain/Band 7 family protein SPFH domain/Band 7 family protein	Putative uncharacterized protein gbs0130	identified by match to PFAM protein family HMM PF01145; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002. SPFH domain/Band 7 family protein	Putative uncharacterized protein	Putative periplasmic protein	Eukaryotic hypersensitive-induced response-like protein	best blastp match gb|AAK34596.1| (AE006613) similar to several eukaryotic hypersensitive-induced response proteins [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protease subunit	SPFH domain/Band 7 family	Probable member of SPFH domain/Band 7 family Conserved hypothetical protein	
RICPR00316	Putative uncharacterized protein RP329	Residues 1 to 574 of 574 are 99 pct identical to residues 1 to 574 of a 574 aa protein from Escherichia coli K12 ref: NP_418002.1 orf, conserved hypothetical protein	Putative membrane protein	IPR000917: Sulfatase putative membrane-associated, metal-dependent hydrolase	Putative uncharacterized protein	Putative membrane protein	integral membrane protein	Similar to Pseudomonas syringae membrane protein, putative PSPto3923 SWALL:Q87Y80 (EMBL:AE016870) (547 aa) fasta scores: E(): 6.5e-31, 30.94% id in 488 aa, and to Rickettsia sibirica hypothetical protein RSIB_ORF.250 SWALL:EAA25508 (EMBL:AABW01000001) (522 aa) fasta scores: E(): 1.3e-30, 27.99% id in 493 aa putative sulfatase	Phosphoethanolamine transferase eptB	unknown	Best Blastp Hit: gb|AAF42335.1| (AE002550) YhbX/YhjW/YijP/YjdB family protein [Neisseria meningitidis MC58] COG2194 Predicted membrane-associated conserved hypothetical protein	Code: R; COG: COG2194 conserved hypothetical protein	Code: R; COG: COG2194 conserved hypothetical protein	Putative membrane-associated metal-dependent hydrolase	Hypothetical membrane protein YhjW	Putative membrane protein	Sulfatase	Membrane-protein YhjW	Membrane protein	Putative membrane protein	conserved hypothetical protein Code: R; COG: COG2194	Membrane protein	predicted metal dependent hydrolase	Putative sulfatase	UDP-N-acetylglucosamine acyltransferase	Predicted PE--lipooligosaccharide phosphorylethanolamine transferase	Putative integral membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00317	Putative Holliday junction resolvase	hypothetical protein	Residues 1 to 138 of 138 are 99 pct identical to residues 1 to 138 of a 138 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289521.1 orf, conserved hypothetical protein	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	putative holliday junction resolvase	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 conserved hypothetical protein TIGR00250	Endonuclease involved in recombination	hypothetical protein	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 conserved hypothetical protein TIGR00250	Putative Holliday junction resolvase	DNA recombination protein, putative	Putative Holliday junction resolvase	Putative Holliday junction resolvase	Holliday junction resolvase protein	Putative Holliday junction resolvase	Mb2584c, -, len: 170 aa. Equivalent to Rv2554c, len: 170 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 170 aa overlap). Conserved hypothetical protein, equivalent to Q9CCS9|ML0513 HYPOTHETICAL PROTEIN from Mycobacterium leprae (184 aa), FASTA scores: opt: 701, E(): 2e-34, (72.05% identity in 161 aa overlap). Also highly similar to Q9KXQ0|SC9C5.24c HYPOTHETICAL 17.7 KDA PROTEIN from Streptomyces coelicolor (167 aa), FASTA scores: opt: 461, E(): 2.3e-20, (54.65% identity in 150 aa overlap); and similar to other hypothetical proteins e.g. Q9KDE4 from Bacillus halodurans (140 aa), FASTA scores: opt: 291, E(): 1.9e-10, (38.7% identity in 137 aa overlap); P74662|SLL1547 from Synechocystis sp. strain PCC 6803 (152 aa), FASTA scores: opt: 290, (36.55% identity in 145 aa overlap); Q52673|YQGF_RHOCA from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (159 aa), FASTA scores: opt: 246, E(): 8.4e-08, (34.8% identity in 135 aa overlap); etc. CONSERVED HYPOTHETICAL PROTEIN	conserved protein YrrK	holliday junction resolvase	Putative Holliday junction resolvase	COG0816 Predicted endonuclease involved in recombination possible Holliday junction resolvase in Mycoplasmas hypothetical protein	

RICPR00319	Putative uncharacterized protein RP332	DTDP-4-dehydrorhamnose reductase	best blastp match gb|AAK33724.1| (AE006530) putative dTDP-4-keto-L-rhamnose reductase [Streptococcus pyogenes M1 GAS] putative dTDP-4-keto-L-rhamnose reductase	Identical to previously sequenced Bacteroides fragilis putative reductase WcgU SWALL:Q9F751 (EMBL:AF285774) (287 aa) fasta scores: E(): 9.2e-116, 100% id in 287 aa, and similar to Vibrio cholerae O37 DTDP-4-dehydrorhamnose reductase SWALL:Q8L347 (EMBL:AF390573) (290 aa) fasta scores: E(): 6.2e-25, 37.87% id in 264 aa putative LPS biosynthesis related reductase	Hypothetical dTDP-4-dehydrorhamnose reductase	identified by match to protein family HMM PF07993 conserved hypothetical protein	NAD-dependent epimerase/dehydratase:dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	Putative dTDP-4-dehydrorhamnose reductase	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 dTDP-4-dehydrorhamnose reductase	predicted dTDP-4-dehydrorhamnose reductase COG1091, pfam04321	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	Carbohydrate oxidoreductase, putative	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	DTDP-4-dehydrorhamnose reductase	Sugar oxidoreductase cytoplasmic protein	Sugar oxidoreductase cytoplasmic protein	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase	dTDP-4-dehydrorhamnose reductase PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain KEGG: rbe:RBE_0710 dTDP-4-dehydrorhamnose reductase	Putative dTDP-4-dehydrorhamnose reductase	Putative reductase	
RICPR00320	UDP-glucose 4-epimerase	Capsular polysaccharide synthesis enzyme Cap8E	Biological Process: biosynthesis (GO:0009058) Polysaccharide biosynthesis protein	capsular polysaccharide synthesis enzyme Cap8E	Putative SUGAR NUCLEOTIDE BIOSYNTHESIS PROTEIN	Ortholog of S. aureus MRSA252 (BX571856) SAR0155 capsular polysaccharide synthesis enzyme	capsular polysaccharide synthesis enzyme Cap8E	UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase UDP-N-acetylglucosamine 4,6-dehydratase	Identical to previously sequenced Bacteroides fragilis putative dehydratase WcgS SWALL:Q9F753 (EMBL:AF285774) (338 aa) fasta scores: E(): 2.8e-127, 100% id in 338 aa, and similar to Escherichia coli Fnl1 protein SWALL:Q8GNF3 (EMBL:AF529080) (344 aa) fasta scores: E(): 3.7e-87, 70.87% id in 333 aa putative LPS biosynthesis related dehydratase	Similar to Streptomyces tenebrarius AprE SWALL:Q9F5R6 (EMBL:AF306787) (332 aa) fasta scores: E(): 8.2e-88, 64.83% id in 327 aa putative dehydratase	similar to polysaccharide biosynthesis protein	Putative uncharacterized protein	capsular polysaccharide synthesis enzyme CapE	identified by match to protein family HMM PF02719; match to protein family HMM PF07993 polysaccharide biosynthesis protein	NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:Polysaccharide biosynthesis protein CapD:dTDP-4-dehydrorhamnose reductase	Identical to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap8E TR:P72371 (EMBL:U73374) (342 aa) fasta scores: E(): 4.3e-127, 100.000% id in 342 aa Highly similar to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap5E TR:P95699 (EMBL:U81973) (342 aa) fasta scores: E(): 1e-126, 99.708% id in 342 aa capsular polysaccharide synthesis enzyme	Predicted nucleoside-diphosphate sugar epimerases CapD protein	Putative nucleoside-diphosphate sugar epimerases	identified by match to protein family HMM PF02719; match to protein family HMM PF07993 capsular polysaccharide biosynthesis protein Cap5E	capsular polysaccharide biosynthesis protein Cap5E identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993	NAD-dependent epimerase/dehydratase	capsular polysaccharide synthesis enzyme CapE	Putative nucleoside-diphosphate sugar epimerase CapD	Polysaccharide biosynthesis protein CapD	Polysaccharide biosynthesis domain protein	polysaccharide biosynthesis protein CapD	capsular polysaccharide biosynthesis protein Cap5E, putative	N-acetyl glucosamine/N-acetyl galactosamine epimerase cytoplasmic protein	N-acetyl glucosamine/N-acetyl galactosamine epimerase cytoplasmic protein	
RICPR00321	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	capsular polysaccharide synthesis enzyme Cap8G	Ortholog of S. aureus MRSA252 (BX571856) SAR0157 capsular polysaccharide synthesis enzyme	capsular polysaccharide synthesis enzyme Cap5G	UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase	Identical to previously sequenced Bacteroides fragilis putative epimerase WcgT SWALL:Q9F752 (EMBL:AF285774) (376 aa) fasta scores: E(): 4.1e-139, 100% id in 376 aa, and similar to Vibrio cholerae O37 UDP-N-acetylglucosamine 2-epimerase SWALL:Q8L346 (EMBL:AF390573) (377 aa) fasta scores: E(): 1.9e-83, 58.71% id in 373 aa putative LPS biosynthesis related epimerase	predicted UDP-N-acetylglucosamine 2-epimerase	capsular polysaccharide synthesis enzyme CapG	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	Highly similar to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap8G TR:P72373 (EMBL:U73374) (374 aa) fasta scores: E(): 2.2e-139, 99.465% id in 374 aa, and to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap5G TR:P95701 (EMBL:U81973) (374 aa) fasta scores: E(): 9.9e-139, 99.198% id in 374 aa capsular polysaccharide synthesis enzyme	UDP-N-acetylglucosamine 2-epimerase	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 UDP-N-acetylglucosamine 2-epimerase Cap5G	capsular polysaccharide biosynthesis protein Cap5G identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236	capsular polysaccharide synthesis enzyme CapG	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase cytoplasmic protein	UDP-N-acetylglucosamine 2-epimerase cytoplasmic protein	putative UDP-N-acetylglucosamine 2-epimerase Wbjd Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PubMedId : 12057956; Product type e : enzyme	UDP-N-acetylglucosamine 2-epimerase PFAM: UDP-N-acetylglucosamine 2-epimerase KEGG: lic:LIC12139 UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase Evidence 2b : Function of strongly homologous gene; PubMedId : 11106477, 12107153; Product type e : enzyme	Putative UDP-N-acetylglucosamine 2-epimerase	Putative UDP-N-acetylglucosamine 2-epimerase	UDP-N-acetylglucosamine 2-epimerase	FnlC protein involved in UDP-L-FucpNAc biosynthesis (A nucleotide sugar for antigen-O bisynthesis). Probable UDP-2-acetamino-2,6-dideoxy-L-talose 2-epimerase	
RICPR00322	Putative uncharacterized protein RP335	Putative uncharacterized protein	
RICPR00323	Putative uncharacterized protein RP336	probable glucosyltransferase	Glycosyl transferase, group 1	Hypothetical protein COG438 Glycosyltransferase [Cell envelope biogenesis, outer membrane]	glycosyl transferase, group 1 family protein	Glycosyltransferase family 4	Glysosyltransferase	Glycosyl transferase group 1	Glycosyl transferase, group 1	Glycosyl transferase, group 1	Glycosyl transferase, group 1, putative	Glycosyl transferase group 1	Probable glycosyltransferase	Glycosyl transferase, group 1 family	Glycosyl transferase group 1	Glycosyl transferase, group 1	Glycosyl transferase group 1	Glycosyl transferase group 1	Glycosyl transferase, group 1	Putative glycosyltransferase	Glycosyl transferase group 1	Glycosyl transferase group 1	Glycosyl transferase group 1	Tlr2389 protein	Glycosyl transferase group 1	Putative glycosyl transferase	Glycosyl transferase group 1	Putative glycosyltransferase	GlgA3	
RICPR00324	Putative uncharacterized protein RP337	Putative uncharacterized protein	
RICPR00325	Putative uncharacterized protein RP338	IPR002656: Acyltransferase 3 family putative inner membrane protein	similar to Salmonella typhimurium putative inner membrane protein putative inner membrane protein	Putative inner membrane protein	conserved hypothetical protein,predicted acyltransferase 3 family family	probable membrane protein	conserved hypothetical transmembrane protein	polysaccharide biosynthesis protein (putative)	Hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein possible membrane protein	Putative membrane protein	Putative uncharacterized protein	Conserved hypothetical membrane protein Msm_1556	Putative uncharacterized protein	conserved hypothetical protein	Putative membrane-associated acyltransferase	Putative uncharacterized protein	Putative uncharacterized protein	Membrane protein, putative	Putative uncharacterized protein	Acyltransferase 3	Acyltransferase 3	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Acyltransferase 3	Putative uncharacterized protein	Putative inner membrane protein	
RICPR00326	Uncharacterized glycosyltransferase RP339	WblT protein	Glycosyltransferase	Glycosyltransferase	Similar to: HI1578, YF78_HAEIN UDP-glcNAc--lipooligosaccharide N-acetylglucosamine glycosyltransferase	Glycosyltransferase	similar to gi|56964929|ref|YP_176660.1| [Bacillus clausii KSM-K16], percent identity 38 in 248 aa, BLASTP E(): 2e-45 putative glycosyltransferase	Glycosyl transferase, family 2	Glycosyl transferase, family 2	predicted glycosyltransferase COG0463	Glycosyl transferase, family 2	Glycosyltransferases involved in cell wall biogenesis-like	Glycosyltransferase involved in cell wall biogenesis COG0463	Glycosyltransferases involved in cell wall biogenesis-like	glycosyl transferase, family 2	Glycosyl transferase, family 2	glycosyl transferase, family 2 PFAM: glycosyl transferase, family 2 KEGG: mag:amb1081 glycosyltransferase	Glycosyltransferase	Glycosyltransferase related enzyme	glycosyltransferase Putative glycosyl transferase MJ1057 (EC 2.-.-.-).  InterPro: Glycosyl transferase family 2 Family membership	glycosyl transferase, group 2 family protein identified by match to protein family HMM PF00535	Glycosyltransferase involved in cell wall biogenesis-like protein	glycosyl transferase, family 2	Glycosyltransferase related enzyme	Glycosyl transferase, family 2	Glycosyltransferase family 2	Putative uncharacterized protein	Glycosyl transferase, family 2	Glycosyltransferase, GT2 family	
RICPR00327	Putative uncharacterized protein RP340	Putative uncharacterized protein	Glycosyl transferase group 1	Glycosyl transferase group 1	Glycosyl transferase group 1	
RICPR00328	Putative uncharacterized protein RP341	Cation efflux system protein	Similar to sp|P76185|YDHJ_ECOLI; Ortholog to ERGA_CDS_05270 Conserved hypothetical protein	identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 efflux transporter, MFP subunit, AcrA/E family	Efflux transporter, RND family, MFP subunit	Secretion protein HlyD	efflux transporter, RND family, MFP subunit identified by match to protein family HMM TIGR01730	Efflux transporter, RND family, MFP subunit	Secretion protein HlyD	membrane fusion protein	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: bur:Bcep18194_B0295 secretion protein, HlyD family	secretion protein HlyD	efflux transporter, RND family, MFP subunit identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit KEGG: neu:NE2037 putative cation-efflux system signal peptide protein	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: sdn:Sden_3429 secretion protein HlyD	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: xac:XAC2064 cation efflux system protein	efflux transporter, RND family, MFP subunit TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: son:SO3102 AcrA/AcrE family protein	Hypothetical protein	Efflux transporter, RND family, MFP subunit precursor	conserved hypothetical periplasmic linker protein KEGG: ppr:PBPRB1678 hypothetical periplasmic linker protein	Efflux transporter, RND family, MFP subunit precursor	Putative uncharacterized protein	Efflux transporter, RND family, MFP subunit	TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit efflux transporter, RND family, MFP subunit	Efflux transporter, RND family, MFP subunit	periplasmic component of efflux system	Efflux transporter, RND family, MFP subunit	Efflux transporter, RND family, MFP subunit precursor	Putative uncharacterized protein	
RICPR00329	Putative uncharacterized protein RP342	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00330	Putative uncharacterized protein RP343	identified by similarity to GB:CAE25485.1 conserved hypothetical protein	Hydrolase protein	similar to BR2116, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Similar to rp||RP343 rc||RC0464; Ortholog to ERGA_CDS_06960 Conserved hypothetical protein	conserved family - putative hydrolase or acyltransferase hypothetical protein	acyltransferase; COG0596 predicted hydrolase	alpha/beta hydrolase fold protein	Similar to rp||RP343 rc||RC0464; Ortholog to ERWE_CDS_07040 Conserved hypothetical protein	Predicted hydrolases or acyltransferases	conserved hypothetical protein	Alpha/beta hydrolase	Esterase/lipase/thioesterase, active site:Alpha/beta hydrolase	conserved hypothetical protein	Alpha/beta hydrolase	conserved hypothetical protein	putative hydrolase identified by similarity to GB:AAB81313.1	abhydrolase domain containing 10 [Source:HGNC Symbol;Acc:25656]	transcript_id=ENSOCUT00000003966	alpha/beta hydrolase fold	transcript_id=ENSDNOT00000008929	Putative hydrolase/acyltransferase	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UIP0 (EMBL:AE008997); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu0253.; length=272; id 70.000; 260 aa overlap; query 5-263; subject 11-270	Alpha/beta hydrolase fold	conserved hypothetical protein KEGG: sil:SPO1285 hypothetical protein, ev=3e-98, 72% identity	conserved hypothetical protein	conserved hypothetical protein identified by similarity to PIR:A71691; match to protein family HMM PF00561	putative hydrolase protein similar to AGR_C_435p [Agrobacterium tumefaciens], BMEI2011 [Brucella melitensis] and SMc00361 [Sinorhizobiummeliloti] Similar to swissprot:Q8UIP0 Putative location:bacterial cytoplasm Psort-Score: 0.2379; go_function: catalytic activity [goid 0003824]	
RICPR00331	CAPM PROTEIN	Putative uncharacterized protein	Lipopolysaccharide biosynthesis-related pr-like protein	identified by similarity to GB:AAD51384.1; match to protein family HMM PF00534 general glycosylation pathway protein	Putative uncharacterized protein	Glycogen synthase	Mb1244c, -, len: 387 aa. Equivalent to Rv1212c, len: 387 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 387 aa overlap). Putative glycosyl transferase (EC 2.-.-.-), highly similar to AJ243803|SCO243803_2 Putative glycosyl transferase from Streptomyces coelicolor (387 aa), FASTA scores: opt: 1344, E(): 0, (54.9% identity in 388 aa overlap). Also similar to MJ1607 probable hexosyltransferase (EC 2.4.1.-) from Methanococcus jannaschii (390 aa), FASTA scores: opt: 445, E(): 7.8e-23, (27.9% identity in 401 aa overlap). The region from aa 267-355 highly similar to Q49959 COSMID B1756 from Mycobacterium leprae (91 aa), FASTA scores, opt: 471, E(): 4.8e-25, (80.9% identity in 89 aa overlap).  Similar to Mycobacterium tuberculosis hypothetical protein, Rv3032. PUTATIVE GLYCOSYL TRANSFERASE	Biological Process: biosynthesis (GO:0009058) Glycosyl transferase, Family 4	glycosyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycosyltransferase	similar to Salmonella typhi CT18 galactosyltransferase galactosyltransferase	Glycosyltransferase	Alpha 1,2 N-acetylglucosamine transferase	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative glycosyltransferase	Putative Glycosyltransferase involved exopolysaccharide (EPS) synthesis	Putative glycosyl transferase	glycosyl transferase	Lipopolysaccharide biosynthesis protein	group 1 family protein glycosyl transferase	putative glycosyltransferase	Glycosyl transferase, group 1	Glycosyltransferase	mannosyltransferase	Glycosyl transferase, group 1	Glycosyl transferase, group 1	putative glycosyltransferase	glycosyl transferase, group 1	predicted glycosyltransferase COG0438, pfam00534	Glycosyl transferase, group 1	
RICPR00332	30S ribosomal protein S4	30S ribosomal protein s4	30S ribosomal protein S4	Residues 1 to 206 of 206 are 99 pct identical to residues 1 to 206 of a 206 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289857.1 30S ribosomal subunit protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30s ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal subunit protein S4	conserved gene 30S ribosomal protein S4	30S ribosomal subunit protein S4	30S ribosomal protein S4	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	SSU ribosomal protein S4P	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	30S ribosomal protein S4	identified by similarity to SP:P02354; match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017 ribosomal protein S4	30S ribosomal protein S4	Ribosomal protein S4	30S ribosomal protein S4	
RICPR00333	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	similar to Polyprenyltransferase (cytochrome oxidase assembly factor) hypothetical protein	conserved gene protoheme IX farnesyltransferase	similar to polyprenyltransferase (cytochrome oxidase assembly factor) hypothetical protein	identified by similarity to EGAD:5818; match to protein family HMM PF01040; match to protein family HMM TIGR01473 protoheme IX farnesyltransferase	cytochrome c oxidase folding protein	identified by match to protein family HMM PF01040; match to protein family HMM TIGR01473 protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase 1	Protoheme IX farnesyltransferase	Cytochrome caa3 oxidase-like protein	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Protoheme IX farnesyltransferase	Mb1486, ctaB, len: 308 aa. Equivalent to Rv1451, len: 308 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 308 aa overlap). Probable ctaB, cytochrome C oxidase assembly factor, and integral membrane protein. Highly similar to several Mycobacterium leprae proteins e.g. Q49685 CYOE cytochrome O ubiquinol oxidase assembly factor (300 aa), FASTA scores: opt: 1636, E(): 0, (82.7% identity in 307 aa overlap); NP_301495.1|NC_002677 putative protoheme IX farnesyltransferase (321 aa); NP_301495.1|NC_002677 putative protoheme IX farnesyltransferase (321 aa). PROBABLE CYTOCHROME C OXIDASE ASSEMBLY FACTOR CTAB	Polyprenyltransferase (cytochrome oxidase assembly factor)	Protoheme IX farnesyltransferase	cytochrome caa3 oxidase (assembly factor) homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR1090 putative protoheme IX farnesyltransferase	cytochrome caa3 oxidase (assembly factor) homolog	putative protoheme IX farnesyltransferase	Similar to sp|Q9ZDI2|COXX_RICPR sp|Q92IF1|COXX_RICCN; Ortholog to ERGA_CDS_08090 Protoheme IX farnesyltransferase	protoheme IX farnesyltransferase	similar to NP_220729.1; go_component: 0016020 cytochrome c oxidase assembly factor	LmjF23.1520, predicted protein, len = 434 aa, possibly farnesyltransferase protein; predicted pI = 9.4234; reasonable similarity to other farnesyltransferase like proteins, contains a UbiA prenyltransferase family domain and 7 probable transmembrane helices (aa 134-156, 218-240, 252-274, 278-300, 321-343, 348-369 and 381-403) protoheme IX farnesyltransferase, putative	
RICPR00334	OUTER MEMBRANE ASSEMBLY PROTEIN	Putative uncharacterized protein	identified by match to protein family HMM PF05170 AsmA family superfamily	identified by match to protein family HMM PF05170 AsmA family superfamily	AsmA	Outer membrane assembly protein	conserved hypothetical protein, AsmA	putative exported protein	AsmA	Outer membrane assembly protein	asmA protein	AsmA	AsmA family protein	AsmA	AsmA family protein	AsmA family protein PFAM: AsmA family protein KEGG: noc:Noc_2265 conserved hypothetical protein, AsmA	Uncharacterized protein involved in outer membrane biogenesis-like	Uncharacterized protein involved in outer membrane biogenesis	Hypothetical protein	Putative outer membrane biogenesis protein	Outer membrane assembly protein	AsmA family protein precursor	Outer membrane assembly protein	Outer membrane assembly protein	Outer membrane assembly protein	Putative uncharacterized protein	Putative secreted protein	outer membrane assembly protein	AsmA family protein precursor	
RICPR00335	Ribosome maturation factor rimM	identified by match to protein family HMM PF01782; match to protein family HMM PF05239 16S rRNA processing protein RimM	Ribosome maturation factor rimM	Ribosome maturation factor rimM	16S rRNA processing protein RimM	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 16S rRNA processing protein RimM	RimM protein, required for 16S rRNA processing	similar to BR1915, 16S rRNA processing protein RimM RimM, 16S rRNA processing protein	Ribosome maturation factor rimM	Ribosome maturation factor rimM	Ribosome maturation factor rimM	Putative 16S rRNA processing protein	Similar to sp|Q9ZDI0|RIMM_RICPR sp|Q92IE7|RIMM_RICCN; Ortholog to ERGA_CDS_09270 Probable 16S rRNA processing protein rimM	Evidence 2b : Function of strongly homologous gene; Product type f : factor 16S rRNA processing protein	COG0806 RimM protein, required for 16S rRNA processing 16S rRNA processing protein	Ribosome maturation factor rimM	COG0806 16S rRNA processing protein	16S rRNA processing protein RimM	Ribosome maturation factor rimM	required for 16S rRNA processing RimM	16S rRNA processing protein RimM	identified by similarity to SP:P21504; match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 16S rRNA processing protein RimM	Similar to sp|Q9ZDI0|RIMM_RICPR sp|Q92IE7|RIMM_RICCN; Ortholog to ERWE_CDS_09360 Probable 16S rRNA processing protein rimM	identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 16S rRNA processing protein RimM	identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273 16S rRNA processing protein RimM	16S rRNA processing protein RimM	RimM protein:PRC-barrel	16S rRNA processing protein RimM	Best Blastp Hit: gb|AAF41019.1| (AE002415) 16S rRNA processing protein RimM [Neisseria meningitidis MC58] COG0806 RimM protein, required for 16S rRNA putative 16S rRNA processing protein	
RICPR00336	Putative uncharacterized protein RP349	Similar to rc||RC0474; Ortholog to ERGA_CDS_01140 Conserved hypothetical protein	Similar to rc||RC0474; Ortholog to ERWE_CDS_01180 Conserved hypothetical protein	unknown	hypothetical protein	unknown	conserved hypothetical protein identified by similarity to GB:AAS14671.1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative exported protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00337	Exodeoxyribonuclease 7 small subunit	Exodeoxyribonuclease 7 small subunit	Residues 1 to 80 of 80 are 100 pct identical to residues 1 to 80 of a 80 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286164.1 exonuclease VII, small subunit	Similar to exodeoxyribonuclease VII, small subunit hypothetical protein	conserved gene exodeoxyribonuclease VII small subunit	Similar to exodeoxyribonuclease VII, small subunit hypothetical protein	identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 exodeoxyribonuclease VII, small subunit	identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 exodeoxyribonuclease VII, small subunit	Probable exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease VII, small subunit	IPR003761: Exonuclease VII, small subunit exonuclease VII, small subunit	similar to Salmonella typhi CT18 exodeoxyribonuclease small subunit exodeoxyribonuclease small subunit	similar to BR0431, exodeoxyribonuclease VII, small subunit XseB, exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease 7 small subunit	Exodeoxyribonuclease 7 small subunit	identified by match to PFAM protein family HMM PF02609 exodeoxyribonuclease VII, small subunit	Exodeoxyribonuclease 7 small subunit	exonuclease VII small subunit; COG1722 exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease 7 small subunit	exodeoxyribonuclease VII small subunit	Exodeoxyribonuclease VII small subunit	hypothetical protein, similar to exodeoxyribonuclease, small subunit	Exodeoxyribonuclease VII small subunit	identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280 exodeoxyribonuclease VII, small subunit	exonuclease VII, small subunit	Code: L; COG: COG1722 exonuclease VII small subunit	similar to gi|27468121|ref|NP_764758.1| [Staphylococcus epidermidis ATCC 12228], percent identity 77 in 66 aa, BLASTP E(): 4e-21 exodeoxyribonuclease small subunit	Exonuclease VII, small subunit	Exodeoxyribonuclease VII, small subunit	
RICPR00338	Putative 3-methyladenine DNA glycosylase	3-methyladenine DNA glycosylase	Putative 3-methyladenine DNA glycosylase	Putative 3-methyladenine DNA glycosylase	Mb1714, -, len: 203 aa. Equivalent to Rv1688, len: 203 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 203 aa overlap). Possible 3-methyladenine DNA glycosylase (EC 3.2.2.-), similar to several eukaryotic 3-methylpurine DNA glycosylases and 3-methyladenine DNA glycosylases e.g. Q39147|X76169 3-METHYLADENINE GLYCOSYLASE from Arabidobsis thaliana (254 aa), FASTA scores: opt: 297, E(): 8.3e-15, (31.8% identity in 198 aa overlap) and P29372|3MG_HUMAN dna-3-methyladenine glycosidase (298 aa), FASTA scores: opt: 220, E(): 7.2e-05, (36.4% identity in 184 aa overlap). BELONGS TO THE MPG FAMILY OF DNA GLYCOSYLASES. Possible 3-methyladenine DNA glycosylase	3-methyladenine DNA glycosylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-methyladenine DNA glycosylase	3-methyladenine DNA glycosylase	Similar to Prokaryotic and Eukaryotic glycosylases including: Chlamydia pneumoniae putative 3-methyladenine DNA glycosylase cpn0505 or cp0248 or cpj0505 SWALL:3MGH_CHLPN (SWALL:Q9Z847) (196 aa) fasta scores: E(): 5.4e-55, 69.35% id in 186 aa and to Rattus norvegicus DNA-3-methyladenine glycosylase mpG SWALL:3MG_RAT (SWALL:P23571) (317 aa) fasta scores: E(): 4.6e-14, 34.51% id in 197 aa putative 3-methyladenine DNA glycosylase	Putative 3-methyladenine DNA glycosylase	Putative 3-methyladenine DNA glycosylase	possible Methylpurine-DNA glycosylase (MPG)	Similar to sp|Q92IE0|3MGH_RICCN sp|Q9ZDH7|3MGH_RICPR; Ortholog to ERGA_CDS_07460 Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)	DNA-3-methyladenine glycosylase II	Similar to sp|Q92IE0|3MGH_RICCN sp|Q9ZDH7|3MGH_RICPR; Ortholog to ERWE_CDS_07540 Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)	DNA-3-methyladenine glycosidase	methylpurine-DNA glycosylase (MPG)	Methylpurine-DNA glycosylase	Methylpurine-DNA glycosylase (MPG)	DNA-3-methyladenine glycosylase identified by similarity to SP:Q39147; match to protein family HMM PF02245; match to protein family HMM TIGR00567	DNA-3-methyladenine glycosylase	Methylpurine-DNA glycosylase (MPG)	DNA-3-methyladenine glycosylase II	DNA-3-methyladenine glycosidase	putative methylpurine-DNA glycosylase similarity:fasta; with=UniProt:Q5EGG7_9SPIO (EMBL:AY884004); Borrelia crocidurae.; mag; Methylpurine-DNA glycosylase.; length=184; id 36.979; 192 aa overlap; query 21-195; subject 3-183 similarity:fasta; with=UniProt:3MGH_AGRT5 (EMBL:AE008348); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-).; length=193; id 51.892; 185 aa overlap; query 14-197; subject 4-188	3-methyladenine DNA glycosylase EC 3.2.2.-	Putative 3-methyladenine DNA glycosylase	3-methyladenine DNA glycosylase	Methylpurine-DNA glycosylase (MPG)	

RICPR00340	NADH-quinone oxidoreductase subunit E	NADH dehydrogenase I E subunit	Respiratory-chain NADH dehydrogenase 24 Kd subunit	NADH:ubiquinone oxidoreductase, subunit E	Probable nadh dehydrogenaseI(Chain e) oxidoreductase protein	NADH dehydrogenase I chain E	conserved gene NADH dehydrogenase I, E subunit	NADH dehydrogenase I chain E	NADH-ubiquinone oxidoreductase, chain E	NADH-ubiquinone oxidoreductase, NQO2 subunit	NADH-quinone oxidoreductase subunit 2	NADH:ubiquinone oxidoreductase chain E	similar to BR0806, NADH dehydrogenase I, E subunit NuoE, NADH dehydrogenase I, E subunit	NADH-ubiquinone oxidoreductase NQO2 subunit	NADH dehydrogenase I, E subunit	NADH dehydrogenase I chain E	Similar to sp|Q9ZDH5|NUOE_RICPR sp|Q92ID9|NUOE_RICCN; Ortholog to ERGA_CDS_04540 NADH-quinone oxidoreductase chain E	COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit NADH dehydrogenase chain E	Similar to Q83BQ9 NADH dehydrogenase I, E subunit from Xanthomonas campestris (174 aa). FASTA: opt: 528 Z-score: 689.7 E(): 1.6e-30 Smith-Waterman score: 528; 52.318 identity in 151 aa overlap NADH dehydrogenase I, E subunit	NADH dehydrogenase I, chain E	NADH-ubiquinone oxidoreductase NQO2 subunit	NADH Dehydrogenase I Chain E	NADH-ubiquinone oxidoreductase chain E	Similar to sp|Q9ZDH5|NUOE_RICPR sp|Q92ID9|NUOE_RICCN; Ortholog to ERWE_CDS_04630 NADH-quinone oxidoreductase chain E	NADH dehydrogenase (ubiquinone), 24 kDa subunit	NADH dehydrogenase (ubiquinone), 24 kDa subunit	NADH dehydrogenase I chain E	Best Blastp Hit: pir||C81222 NADH dehydrogenase I, E chain NMB0245 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225467|gb|AAF40699.1| (AE002381) NADH dehydrogenase I, E subunit [Neisseria meningitidis MC58] COG1905 NADH-ubiquinone oxidoreductase 24 kD; NuoE putative NADH dehydrogenase I chain E	
RICPR00341	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	membrane bound hydrogenase, NiFe-hydrogenase large subunit 2	Probable nadh dehydrogenaseI(Chain d) oxidoreductase protein	NADH dehydrogenase I chain D	conserved gene NADH dehydrogenase I, D subunit	NADH dehydrogenase I chain D	NADH dehydrogenase subunit 7	identified by similarity to SP:O07310; match to protein family HMM PF00346; match to protein family HMM TIGR01962 NADH dehydrogenase I, D subunit	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NAD(P)H-quinone oxidoreductase subunit H	identified by match to protein family HMM PF00346 NADH-quinone oxidoreductase, D subunit	NADH-ubiquinone oxidoreductase chain D protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO4 subunit	NADH:ubiquinone oxidoreductase chain D	NADH-quinone oxidoreductase subunit D	similar to BR0805, NADH dehydrogenase I, D subunit NuoD, NADH dehydrogenase I, D subunit	NADH-quinone oxidoreductase subunit D	NADH-quinone oxidoreductase subunit D	NADH oxidoreductase I	NADH dehydrogenase I chain D	putative NADH Dehydrogenase subunit	Similar to sp|Q9ZDH4|NUOD_RICPR sp|O21270|NUCM_RECAM sp|Q9TC96|NUCM_NEPOL sp|Q37619|NUCM_PROWI; Ortholog to ERGA_CDS_04530 NADH-quinone oxidoreductase chain D	COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 NADH dehydrogenase chain D	Similar to Escherichia coli NADH-quinone oxidoreductase chain C/D NuoC or NuoCD or NuoD or B2286 but truncated 45 amino acids at the N-terminus SWALL:NUCD_ECOLI (SWALL:P33599) (600 aa) fasta scores: E(): 3.2e-44, 31.05% id in 541 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain D BT4065 SWALL:AAO79170 (EMBL:AE016943) (538 aa) fasta scores: E(): 3.9e-195, 88.49% id in 530 aa, and C-terminus is similar to entire protein of Thermoplasma acidophilum probable NADH dehydrogenase, chain D ta0967 SWALL:Q9HJK0 (EMBL:AL445066) (369 aa) fasta scores: E(): 1.7e-52, 42.38% id in 361 aa putative NADH-quinone oxidoreductase chain C/D	Similar to Q9K1C0 NADH dehydrogenase I, D subunit from Neisseria meningitidis (418 aa). FASTA: opt: 2017 Z-score: 2551.9 E(): 3e-134Smith-Waterman score: 2017; 69.249 identity in 413 aa overlap NADH dehydrogenase I, D subunit	NADH-ubiquinone oxidoreductase 49 kDa subunit, putative	
RICPR00342	NADH-quinone oxidoreductase subunit C	NADH-quinone oxidoreductase subunit C	NADH-quinone oxidoreductase subunit C	NADH dehydrogenase I chain C	conserved gene NADH dehydrogenase I, C subunit	identified by similarity to SP:O84971; match to protein family HMM PF00329; match to protein family HMM TIGR01961 NADH-quinone oxidoreductase, C subunit	NADH-quinone oxidoreductase subunit C	NADH-quinone oxidoreductase subunit C	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase subunit C	Mb3171, nuoC, len: 236 aa. Equivalent to Rv3147, len: 236 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 236 aa overlap). Probable nuoC, NADH dehydrogenase, chain C (EC 1.6.5.3), similar to others e.g. Q9XAQ6|NUOC from Streptomyces coelicolor (251 aa), FASTA scores: opt: 1113, E(): 2.6e-64, (67.35% identity in 236 aa overlap); Q9A6X2|CC1954 from Caulobacter crescentus (197 aa), FASTA scores: opt: 351, E(): 1.6e-15, (41.65% identity in 132 aa overlap); BAB48757|MLL1369 from Rhizobium loti (Mesorhizobium loti) (201 aa), FASTA scores: opt: 347, E(): 3e-15, (42.4% identity in 132 aa overlap); etc. Also similar to Q9UUU0|NUGM NUGM PROTEIN PRECURSOR (EC 1.6.99.3) from Yarrowia lipolytica (Candida lipolytica) (281 aa), FASTA scores: opt: 356, E(): 1.1e-15, (34.55% identity in 162 aa overlap). Also similar to MTCY251.05, FASTA score: E():4.9e-05. Equivalent to AAK47574 from Mycobacterium tuberculosis strain CDC1551 but longer 26 aa. BELONGS TO THE COMPLEX I 30 KDA SUBUNIT FAMILY. TBparse score is 0.893. PROBABLE NADH DEHYDROGENASE I (CHAIN C) NUOC (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN C)	NADH:ubiquinone oxidoreductase chain C	similar to BR0804, NADH dehydrogenase I, C subunit NuoC, NADH dehydrogenase I, C subunit	NADH-quinone oxidoreductase subunit C	NADH dehydrogenase I chain C	Similar to sp|O68854|NUC1_RHIME sp|O84971|NUOC_RHOCA rp||nuoC; Ortholog to ERGA_CDS_03070 NADH-quinone oxidoreductase chain C	NADH dehydrogenase I chain C	COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit NADH-ubiquinone oxidoreductase subunit	NADH dehydrogenase I, chain C	NADH Dehydrogenase I Chain C	NADH dehydrogenase subunit	Similar to sp|O68854|NUC1_RHIME sp|O84971|NUOC_RHOCA rp||nuoC; Ortholog to ERWE_CDS_03120 NADH-quinone oxidoreductase chain C	NADH (or F420H2) dehydrogenase, subunit C	NADH (or F420H2) dehydrogenase, subunit C	NADH dehydrogenase I chain C	Best Blastp Hit: sp|Q9JX80|NUOC_NEIMA NADH dehydrogenase I chain C (NADH-ubiquinone oxidoreductase chain C) >gi|7378795|emb|CAB83337.1| (AL162752) NADH dehydrogenase I chain C [Neisseria meningitidis] COG0852 NADH-ubiquinone oxidoreductase 27 kD; NuoC putative NADH dehydrogenase I chain C	NADH (or F420H2) dehydrogenase, subunit C	NADH (or F420H2) dehydrogenase, subunit C	
RICPR00343	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH dehydrogenase I chain B	conserved gene NADH dehydrogenase I, B subunit	NADH dehydrogenase I chain B	identified by similarity to SP:P29918; match to protein family HMM PF01058; match to protein family HMM TIGR01957 NADH dehydrogenase I, B subunit	NADH-quinone oxidoreductase subunit B	identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 NADH-quinone oxidoreductase, B subunit	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	Mb3170, nuoB, len: 184 aa. Equivalent to Rv3146, len: 184 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 184 aa overlap). Probable nuoB, NADH dehydrogenase, chain B (EC 1.6.5.3), similar to others e.g. Q9XAQ5|NUOB from Streptomyces coelicolor (184 aa), FASTA scores: opt: 989, E(): 1.4e-56, (78.25% identity in 184 aa overlap); Q56218|NQO6_THETH|NQO6 from Thermus aquaticus (subsp. thermophilus) (181 aa), FASTA scores: opt: 720, E(): 2.6e-39, (64.45% identity in 152 aa overlap); Q9RU87|DR1505 from Deinococcus radiodurans (181 aa), FASTA scores: opt: 719, E(): 3e-39, (62.6% identity in 155 aa overlap); etc. BELONGS TO THE COMPLEX I 20 KDA SUBUNIT FAMILY. MAY CONTAIN AN IRON-SULFUR 4FE-4S CLUSTER.  TBparse score is 0.912. PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN B)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO6 subunit	NADH-quinone oxidoreductase subunit 6	NADH:ubiquinone oxidoreductase chain B	NADH-quinone oxidoreductase subunit B	similar to BR0803, NADH dehydrogenase I, B subunit NuoB, NADH dehydrogenase I, B subunit	NADH-quinone oxidoreductase subunit B	NADH-quinone oxidoreductase subunit B	NADH oxidoreductase I	NADH dehydrogenase I chain B	Similar to rc||nuoB sp|O21272|NUKM_RECAM; Ortholog to ERGA_CDS_03090 NADH-ubiquinone oxidoreductase chain B	NADH:ubiquinone oxidoreductase, B subunit	COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases NADH dehydrogenase I chain B	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri NADH-quinone oxidoreductase chain B NuoB or B2287 or C2828 or Z3546 or ECS3171 or SF2363 or s2498 SWALL:NUOB_ECOLI (SWALL:P33598) (220 aa) fasta scores: E(): 2.1e-32, 55.06% id in 158 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain B BT4066 SWALL:AAO79171 (EMBL:AE016943) (197 aa) fasta scores: E(): 1.6e-74, 93.81% id in 194 aa, and to Mus musculus 1010001m04rik protein ndufs7 or 1010001m04riK SWALL:Q9DC70 (EMBL:AK003132) (224 aa) fasta scores: E(): 4.7e-34, 56.12% id in 155 aa NADH-quinone oxidoreductase chain B	Similar to Q9K1C2 NADH dehydrogenase I, B subunit from Neisseria meningitidis (160 aa). FASTA: opt: 897 Z-score: 1164.1 E(): 6e-57 Smith-Waterman score: 897; 79.747 identity in 158 aa overlap NADH dehydrogenase I, B subunit	
RICPR00344	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit A	NADH-quinone oxidoreductase subunit A	NADH dehydrogenase I chain A	conserved gene NADH dehydrogenase I, A subunit	NADH dehydrogenase I chain A	NADH dehydrogenase subunit 3	identified by similarity to SP:O84969; match to protein family HMM PF00507 NADH dehydrogenase I, A subunit	NADH-quinone oxidoreductase subunit	NAD(P)H-quinone oxidoreductase subunit 3	identified by similarity to SP:O84969; match to protein family HMM PF00507 NADH-quinone oxidoreductase, A subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit A	Mb3169, nuoA, len: 128 aa. Equivalent to Rv3145, len: 128 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 128 aa overlap). Probable nuoA, integral membrane NADH dehydrogenase, chain A (EC 1.6.5.3), similar to others e.g. Q9XAQ4|NUOA from Streptomyces coelicolor (119 aa), FASTA scores: opt: 405, E(): 5.4e-20, (68.75% identity in 128 aa overlap); Q9RU86|DR1506 from Deinococcus radiodurans (160 aa), FASTA scores: opt: 327, E(): 9e-15, (40.3% identity in 124 aa overlap); BAB47039|NDHC from Triticum aestivum (Wheat), FASTA scores: opt: 273, E(): 2.6e-11, (38.1% identity in 126 aa overlap); etc. Also similar to a NADH-PLASTOQUINONE OXIDOREDUCTASES e.g. P26303|NU3C_WHEAT|NDHC from Triticum aestivum (Wheat) (120 aa), FASTA scores: opt: 273, E(): 2.6e-1, (38.1% identity in 126 aa overlap). BELONGS TO THE COMPLEX I SUBUNIT 3 FAMILY. TBparse score is 0.895. PROBABLE NADH DEHYDROGENASE I (CHAIN A) NUOA (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN A)	NADH-quinone oxidoreductase subunit A	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO7 subunit	NADH-quinone oxidoreductase subunit 7	NADH:ubiquinone oxidoreductase chain A	NADH-quinone oxidoreductase subunit	similar to BR0802, NADH dehydrogenase I, A subunit NuoA, NADH dehydrogenase I, A subunit	NADH-quinone oxidoreductase subunit	NADH-quinone oxidoreductase subunit	NADH oxidoreductase I	NADH dehydrogenase I chain A	putative NADH Dehydrogenase subunit	Similar to sp|Q9ZDH1|NUOA_RICPR sp|Q92ID5|NUOA_RICCN; Ortholog to ERGA_CDS_03100 NADH-quinone oxidoreductase chain A	
RICPR00345	Putative polysaccharide polymerase RP358	Putative lipid A core-O-antigen ligase	O-antigen polymerase precursor	conserved hypothetical protein, possible O-antigen ligase-related	Lipid A core-O-antigen ligase and related enzyme	O-antigen polymerase PFAM: O-antigen polymerase KEGG: rle:pRL90138 putative transmembrane exopolysaccharide production protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative lipid A core-O-antigen ligase	Putative lipid A core-O-antigen ligase	Putative uncharacterized protein	Putative O-antigen polymerase	O-antigen polymerase	Exopolysaccharide biosynthesis family protein	Putative uncharacterized protein	Exopolysaccharide biosynthesis family protein	Exopolysaccharide biosynthesis family protein	Exopolysaccharide biosynthesis family protein	Membrane protein, putative	O-antigen polymerase	O-antigen polymerase	O-antigen polymerase	Putative lipid A core-O-antigen ligase	Exopolysaccharide biosynthesis family protein	
RICPR00346	Uncharacterized protein RP359	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00347	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Residues 1 to 298 of 298 are 99 pct identical to residues 1 to 298 of a 298 aa protein from Escherichia coli K12 ref: NP_417370.1 site-specific recombinase	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Phage integrase:Phage integrase N-terminal SAM- like domain	integrase/recombinase	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Integrase/recombinase xerD	Integrase/recombinase	identified by similarity to EGAD:108451; match to protein family HMM PF00589; match to protein family HMM PF02899 tyrosine recombinase XerD	Integrase-recombinase protein	identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899 tyrosine recombinase XerD	Integrase/recombinase	Tyrosine recombinase xerD	Tyrosine recombinase xerD	Putative uncharacterized protein	Tyrosine site-specific integrase/recombinase protein	Tyrosine recombinase xerD	Mb1727, -, len: 311 aa. Equivalent to Rv1701, len: 311 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 311 aa overlap). Probable integrase/recombinase, similar to many e.g.  XERD_ECOLI|P21891 integrase/recombinase xerd (298 aa), FASTA scores: opt: 583, E(): 0, (41.8% identity in 311 aa overlap). Also similar to other Mycobacterium tuberculosis integrase/recombinase proteins RV2894c|MTCY274.25c (43.1% identity in 304 aa overlap); and Rv2646|MTCY441.16 phiRv2 integrase (31.1% identity in 161 aa overlap). Equivalent to Z95117|MLCB1351_7 from Mycobacterium leprae (316 aa) (85.4% identity in 316 aa overlap). PROBABLE INTEGRASE/RECOMBINASE	InterProMatches:IPR010998, IPR011010; involved in the resolution of chromosome dimers site-specific integrase/recombinase	site-specific tyrosine recombinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark integrase-recombinase XerD	XerD COG4974 Site-specific recombinase XerD integrase-recombinase	IPR002104: Phage integrase; IPR004107: Phage integrase, N-terminal SAM-like recombinase, site-specific	similar to Salmonella typhi CT18 site-specific integrase/recombinase site-specific integrase/recombinase	Similar to Proteus mirabilis site-specific recombinase XerD SWALL:O31206 (EMBL:AF033497) (313 aa) fasta scores: E(): 3e-35, 40.26% id in 298 aa, and to Chlamydophila caviae integrase/recombinase XerD or cca00737 SWALL:Q822E6 (EMBL:AE016996) (298 aa) fasta scores: E(): 1.3e-105, 86.53% id in 297 aa, and to Chlamydia pneumoniae integrase/recombinase XerD or cpn1024 or cp0828 SWALL:Q9Z6N5 (EMBL:AE001683) (301 aa) fasta scores: E(): 1.5e-88, 74.08% id in 301 aa putative site-specific recombinase	similar to BR2031, integrase/recombinase XerD XerD, integrase/recombinase	

RICPR00349	Uncharacterized protein RP363	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00350	Uncharacterized protein RP364	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00351	Enoyl-[acyl-carrier-protein] reductase	Enoyl-[acyl-carrier-protein ] reductase	Residues 1 to 262 of 262 are 100 pct identical to residues 1 to 262 of a 262 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287908.1 enoyl-[acyl-carrier-protein] reductase (NADH)	Enoyl-Acyl-Carrier Protein Reductase	Short-chain dehydrogenase/reductase (SDR) superfamily	Trans-2-enoyl-ACP reductase	FabI protein	Probable enoyl-[acyl-carrier-protein] reductase [nadh] oxidoreductase	Enoyl-[acyl-carrier-protein] reductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	conserved gene enoyl reductase	similar to Enoyl-[acyl-carrier-protein] reductase hypothetical protein	Enoyl-[acyl-carrier protein] reductase	identified by match to protein family HMM PF00106; match to protein family HMM PF00678 enoyl-(acyl-carrier-protein) reductase	enoyl-[acyl-carrier protein] reductase (NADH)	identified by similarity to SP:P29132; match to protein family HMM PF00106 enoyl-(acyl-carrier-protein) reductase	Enoyl-[acyl-carrier-protein] reductase	Trans-2-enoyl-ACP reductase	Enoyl-[acyl-carrier-protein] reductase	identified by similarity to SP:Q9ZFE4; match to protein family HMM PF00106 enoyl-(acyl-carrier-protein) reductase	InhA	Enoyl-[acyl-carrier-protein] reductase	Mb1520, inhA, len: 269 aa. Equivalent to Rv1484, len: 269 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 269 aa overlap). inhA, NADH-dependent enoyl-[acyl-carrier-protein] reductase (EC 1.3.1.9) (see citations below). Identical to INHA_MYCTU|P46533 enoyl-[acyl-carrier-protein] reductase from Mycobacterium tuberculosis and G1155270 Mycobacterium bovis enoyl acp reductase. SOME SIMILARITY TO THE SHORT-CHAIN DEHYDROGENASES/REDUCTASES (SDR) FAMILY. NADH-DEPENDENT ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE INHA (NADH-DEPENDENT ENOYL-ACP REDUCTASE)	InterProMatches:IPR002198, IPR002347; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491) enoyl-acyl carrier protein reductase	enoyl-[acyl-carrier-protein] reductase [NADH]	Enoyl-[acyl carrier protein] reductase	NADH-dependent enoyl-ACP reductase	IPR002347: Glucose/ribitol dehydrogenase enoyl-[acyl-carrier-protein] reductase (NADH)	Enoyl-[acyl-carrier-protein] reductase (NADH)	
RICPR00352	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase 1	Residues 1 to 512 of 512 are 99 pct identical to residues 1 to 512 of a 512 aa protein from Escherichia coli K12 ref: NP_415190.1 apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Similar to apolipoprotein N-acyltransferase (ALP N-acyltransferase) (copper homeostasis protein CutE) hypothetical protein	conserved gene apolipoprotein N-acyltransferase	Similar to apolipoprotein N-acyltransferase (ALP N-acyltransferase) (copper homeostasis protein CutE) hypothetical protein	identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546 apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	identified by similarity to SP:O87576; match to protein family HMM TIGR00546 apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	Mb2285c, -, len: 502 aa. Equivalent to Rv2262c and Rv2261c, len: 360 aa and 140 aa, from Mycobacterium tuberculosis strain H37Rv, (94.7% identity in 357 aa overlap and 100.0% identity in 140 aa overlap). Conserved hypothetical protein, with function unknown but some similarity to N-terminal 70% of P23930|P77703|LNT_ECOLI|CUTE|B0657 APOLIPOPROTEIN N-ACYLTRANSFERASE (EC 2.3.1.-) from Escherichia coli strain K12 (512 aa), FASTA scores: opt: 239, E(): 1.6e-07, (30.4% identity in 359 aa overlap). Note that neighboring ORF shows similarity to N -terminal part of PCC6803 apolipoprotein N-acyltransferase from Synechocystis sp., suggesting possibility of frameshift. Sequence of clones from two sources has been checked but no error found.  Appear to be two extra bases at position 1876970 compared to CDC1551 strain. Conserved hypothetical protein, with function unknown but some similarity to C-terminal end of PCC6803 apolipoprotein N-acyltransferase from Synechocystis sp. Note that next ORF shows similarity to N-terminal part of P74055 APOLIPOPROTEIN N-ACYLTRANSFERASE from Escherichia coli (519 aa), FASTA scores: opt: 142, E(): 0.007, (29.9% identity in 117 aa overlap), suggesting possible frameshift. Sequence of clones from two sources has been checked but no error found.  REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, Rv2262c and Rv2261c exist as 2 genes. In Mycobacterium bovis, a 2 bp deletion (ct-*) results in a single product which is more similar to Rv2262c. CONSERVED HYPOTHETICAL PROTEIN	Apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase	IPR003010: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane	similar to Salmonella typhi CT18 apolipoprotein N-acyltransferase apolipoprotein N-acyltransferase	Similar to Chlamydia pneumoniae apolipoprotein N-acyltransferase Lnt or cutE or cpn0653 or cp0094 SWALL:LNT_CHLPN (SWALL:Q9Z7Q1) (541 aa) fasta scores: E(): 2.8e-131, 58.22% id in 541 aa, and to Escherichia coli apolipoprotein N-acyltransferase Lnt or CutE SWALL:LNT_ECOLI (SWALL:P23930) (512 aa) fasta scores: E(): 2.8e-05, 21.42% id in 518 aa conserved hypothetical lipoprotein	Apolipoprotein N-acyltransferase	similar to BR2158, apolipoprotein N-acyltransferase CutE, apolipoprotein N-acyltransferase	Putative apolipoprotein N-acyltransferase	Putative apolipoprotein N-acyltransferase	Apolipoprotein N-acyltransferase, putative	Similar to sp|Q9ZDG3|LNT_RICPR rc||lnt; Ortholog to ERGA_CDS_01150 Apolipoprotein N-acyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme apolipoprotein N-acyltransferase, copper homeostasis protein	
RICPR00353	Uncharacterized protein RP367	Putative abc-type uncharacterized transport system, periplasmic component abc transporter protein	ABC transporter, substrate binding protein	ABC transporter substrate-binding protein	ABC transporter substrate binding protein	ABC transporter substrate-binding protein	putative ABC transporter substrate binding protein	similar to BR2053, ABC transporter, periplasmic substrate-binding protein, hypothetical ABC transporter, periplasmic substrate-binding protein, hypothetical	Putative uncharacterized protein gbs1262	identified by Glimmer2; putative conserved hypothetical protein	ABC transporter substrate-binding protein	best blastp match gb|AAK33912.1| (AE006546) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Putative ABC transporter substrate-binding protein - unknown substrate	ABC transporter substrate binding protein	Protein of unknown function DUF534	unknown	identified by similarity to GB:CAD64823.1; match to protein family HMM PF04392 ABC transporter, substrate-binding protein, putative	ABC transporter substrate-binding protein	Protein of unknown function DUF534	Putative ABC transporter, substrate-binding lipoprotein precursor	protein of unknown function DUF534	putative exported protein	ABC transporter substrate-binding protein	ABC transporter substrate-binding protein	protein of unknown function DUF534	ABC-type transport system, periplasmic component	ABC-type uncharacterized transport system, periplasmic component COG2984	ABC transporter substrate-binding protein COG2984 [R] ABC-type uncharacterized transport system, periplasmic component	conserved hypothetical exported protein similarity:fasta; with=UniProt:Q92L69_RHIME (EMBL:SME591793); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc03830.; length=317; id 88.328; 317 aa overlap; query 1-317; subject 1-317	
RICPR00354	Uncharacterized protein RP368	Putative transmembrane abc transporter protein	ABC transporter permease protein	ABC transporter permease protein	Sugar ABC transporter	ABC transporter permease	ABC transporter membrane spanning permease	similar to BR2055, branched-chain amino acid ABC transporter, permease protein branched-chain amino acid ABC transporter, permease protein	ABC transporter permease protein	best blastp match gb|AAK33914.1| (AE006547) putative ABC transport protein (permease) [Streptococcus pyogenes M1 GAS] putative ABC transport protein (permease)	Putative ABC transporter membrane-spanning permease - unknown substrate	ABC transporter membrane-spanning protein	inner-membrane translocator	ABC transporter permease protein	ABC transporter permease protein	Bacterial inner-membrane translocator	Putative ABC transporter, membrane-spanning subunit	ABC transporter, permease protein	inner-membrane translocator	ABC transporter permease protein	ABC transporter, inner membrane subunit	ABC transporter permease protein	ABC-type uncharacterized transport system, permease component COG4120	ABC transporter permease protein COG0390 [R] ABC-type uncharacterized transport system, permease component	putative transmembrane component of ABC transporter similarity:fasta; with=UniProt:Q92L70_RHIME (EMBL:SME591793); Rhizobium meliloti (Sinorhizobium meliloti).; PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN.; length=283; id 91.166; 283 aa overlap; query 10-291; subject 1-283	Inner-membrane translocator	inner-membrane translocator	Branched-chain amino acid transport system / permease component identified by match to protein family HMM PF02653	ABC transporter permease protein	

RICPR00355	ABC TRANSPORTER ATP-BINDING PROTEIN	putative ABC transporter, ATP-binding protein similar to SMc03828 [Sinorhizobium meliloti] and AGR_C_4841p [Agrobacterium tumefaciens] Similar to swissprot:Q92L71 Putative location:bacterial inner membrane Psort-Score: 0.2232; go_component: membrane [goid 0016020]; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: transport [goid 0006810]	Putative ABC transporter ATP-binding protein	Putative ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	Putative ABC transporter, ATP-binding protein	ABC transporter related	
RICPR00356	Uncharacterized protein RP370	conserved family - putative disulfide bond formation protein hypothetical protein	DsbB Disulfide bond formation protein	Similar to sp|Q9ZDF9|Y370_RICPR rc||RC0504; Ortholog to ERWE_CDS_02230 Conserved hypothetical protein	Disulfide bond formation protein DsbB	Disulfide bond formation protein DsbB	disulfide bond formation protein, DsbB family identified by match to protein family HMM PF02600	Disulfide bond formation protein DsbB	disulfide bond formation protein, DsbB family identified by match to protein family HMM PF02600	disulfide bond formation family protein identified by match to protein family HMM PF02600	disulfide bond formation protein COG1495 Disulfide bond formation protein DsbB	Disulfide bond formation protein	Putative uncharacterized protein	Disulfide bond formation protein DsbB	Disulfide bond formation protein DsbB	Putative uncharacterized protein	disulfide bond formation protein B	Putative uncharacterized protein	Disulphide bond formation protein DsbB precursor	Putative uncharacterized protein	Disulphide bond formation protein DsbB	Putative uncharacterized protein	
RICPR00357	Lysyl-tRNA synthetase	lysyl-tRNA synthetase	lysyl-tRNA synthetase	Lysyl-tRNA synthetase class I	similar to BRA0790, lysyl-tRNA synthetase, hypothetical hypothetical lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	Similar to sp|Q92IB5|SYK_RICCN sp|Q9ZDF8|SYK_RICPR; Ortholog to ERGA_CDS_04330 Lysyl-tRNA synthetase	COG1190 LysU lysyl-tRNA synthetase class II similar to NP_360142.1; go_process: 0006430 lysyl-tRNA synthetase	class I; COG1384 lysyl-tRNA synthetase	Similar to Pyrococcus horikoshii lysyl-tRNA synthetase LysS or ph0224 SWALL:SYK_PYRHO (SWALL:O57963) (523 aa) fasta scores: E(): 2e-56, 33.2% id in 530 aa lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysine-tRNA ligase	lysine--tRNA ligase, class I (lysyl-tRNA synthetase, class I)	Lysyl-tRNA synthetase	Similar to sp|Q92IB5|SYK_RICCN sp|Q9ZDF8|SYK_RICPR; Ortholog to ERWE_CDS_04390 Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysyl-tRNA synthetase class 1c	lysine--tRNA ligase (EC 6.1.1.6)	Lysyl-tRNA synthetase (archaeal), class 1c	Aminoacyl-tRNA synthetase, class I:Lysyl-tRNA synthetase (archaeal), class 1c	lysyl-tRNA synthetase	Lysine--tRNA ligase	class I:Cytochrome b/b6, N-terminal Lysyl-tRNA synthetase	Lysyl-tRNA synthetase	lysyl-tRNA synthetase	lysyl-tRNA synthetase identified by similarity to SP:O29052; match to protein family HMM PF01921; match to protein family HMM TIGR00467	LysS lysyl-tRNA synthetase	lysyl-tRNA synthetase	
RICPR00358	Putative uncharacterized protein RP372	Similar to unknown protein	identified by match to protein family HMM PF03547 auxin efflux carrier family protein	transporter	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	Putative uncharacterized protein	conserved hypothetical protein	Auxin Efflux Carrier	Auxin Efflux Carrier	Predicted permease	identified by match to protein family HMM PF03547 putative transporter	putative transporter	Auxin Efflux Carrier	Auxin Efflux Carrier	Auxin Efflux Carrier	Putative permease	predicted Permease COG0679	Auxin Efflux Carrier PFAM: Auxin Efflux Carrier: (1.6e-14) KEGG: ttj:TTHA0659 hypothetical protein, ev=2e-45, 41% identity	Auxin Efflux Carrier	Auxin Efflux Carrier	Auxin Efflux Carrier	Auxin Efflux Carrier	Auxin efflux carrier family protein	Auxin Efflux Carrier	Auxin Efflux Carrier PFAM: Auxin Efflux Carrier KEGG: plt:Plut_0560 permeases-like	Auxin Efflux Carrier PFAM: Auxin Efflux Carrier KEGG: bur:Bcep18194_B1694 auxin efflux carrier	Auxin Efflux Carrier	Predicted permease	putative permease identified by match to protein family HMM PF03547	
RICPR00359	Probable NADP-dependent malic enzyme	identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949 NADP-dependent malic enzyme	Phosphate acetyltransferase	NADP-dependent malic enzyme	Similar to rc||tme sp|Q9ZDF6|MAO2_RICPR sp|O30808|MAO2_RHIME sp|Q9ZFV8|MAO2_SALTY sp|P76558|MAO2_ECOLI sp|P43837|MAO2_HAEIN; Ortholog to ERGA_CDS_01130 NADP-dependent malic enzyme	COG0039 Mdh malate/lactate dehydrogenases; go_process: 0006108 NADP-dependent malic enzyme	Similar to Escherichia coli NADP-dependent malic enzyme MaeB or B2463 SWALL:MAO2_ECOLI (SWALL:P76558) (759 aa) fasta scores: E(): 2.3e-127, 49.8% id in 755 aa, and to Rhizobium meliloti NADP-dependent malic enzyme Tme or R00394 or SMC01126 SWALL:MAO2_RHIME (SWALL:O30808) (761 aa) fasta scores: E(): 9.2e-121, 46.1% id in 757 aa putative NADP-dependent malic enzyme	probable NADP-dependent malic enzyme	Similar to rc||tme sp|Q9ZDF6|MAO2_RICPR sp|O30808|MAO2_RHIME sp|Q9ZFV8|MAO2_SALTY sp|P76558|MAO2_ECOLI sp|P43837|MAO2_HAEIN; Ortholog to ERWE_CDS_01170 NADP-dependent malic enzyme	Malate oxidoreductase and phosphate acetyltransferase	Malate dehydrogenase(oxaloacetatedecarboxylating) (NADP+), Phosphateacetyltransferase	Phosphate acetyltransferase Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)	putative Malic oxidoreductase; Pta, Phosphotransacetylase	Malate dehydrogenase (Oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase	Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase	NADP-dependent malic enzyme	malate dehydrogenase identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949	Malate oxidoreductase and phosphate acetyltransferase	putative NADP-dependent malate dehydrogenase similarity:fasta; with=UniProt:MAO2_ECOLI (EMBL:ECD874); Escherichia coli.; maeB; NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME).; length=759; id 46.667; 750 aa overlap; query 17-759; subject 7-754 similarity:fasta; with=UniProt:MAO2_RHIME (EMBL:AF017444); Rhizobium meliloti (Sinorhizobium meliloti).; tme; NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME).; length=761; id 85.677; 761 aa overlap; query 1-761; subject 1-761	malate dehydrogenase oxaloacetate decarboxylating (NADP+), phosphate acetyltransferase	Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase PFAM: phosphate acetyl/butaryl transferase: (1.9e-64) malic enzyme-like: (5.7e-78) malic enzyme, NAD-binding: (2.2e-124) KEGG: sil:SPO0012 NADP-dependent malic enzyme, ev=0.0, 89% identity	malate dehydrogenase identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949	malate dehydrogenase (oxaloacetate-decarboxylating) protein similar to tme (SMc01126) [Sinorhizobium meliloti] Similar to entrez-protein:O30808 Putative location:bacterial inner membrane Psort-Score: 0.1850; go_function: oxidoreductase activity [goid 0016491]; go_function: catalytic activity [goid 0003824]; go_function: acyltransferase activity [goid 0008415]; go_function: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity [goid 0004473]; go_function: malic enzyme activity [goid 0004470]; go_process: metabolism [goid 0008152]; go_process: malate metabolism [goid 0006108]	malate dehydrogenase (oxaloacetate decarboxylating)/ phosphate acetyltransferase	Malate dehydrogenase (Oxaloacetate- decarboxylating) (NADP(+))/Phosphate acetyltransferase	malate dehydrogenase identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF01515; match to protein family HMM PF03949	NADP-dependent malic enzyme	NADP-dependent malic enzyme	NADP-dependent malic enzyme COG0281 Malic enzyme	
RICPR00360	PROTEIN TRANSPORT PROTEIN SEC7	conserved gene guanine nucleotide exchange protein	RalF protein, translocated into host cells by the Dot/Icm system	RalF protein	Putative uncharacterized protein	
RICPR00361	PROLINE/BETAINE TRANSPORTER	MFS type sugar transporter PFAM00083 Proline/betaine transporter	Proline/betaine transporter	permease of the major facilitator superfamily	Putative Permease of the major facilitator superfamily (MFS); putative sugar transporter	Putative Permease of the major facilitator superfamily	Proline/betaine transporter	Major facilitator superfamily MFS_1	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Major facilitator superfamily MFS_1	Probable MFS permease	proline/betaine transporter	Proline/betaine transporter	Putative General substrate transporter, MFS family	General substrate transporter	Sialic acid-transport integral membrane protein NanT	Permease of the major facilitator superfamily	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Proline/betaine transporter	Proline/betaine transporter	Major facilitator superfamily MFS_1	
RICPR00362	Malate dehydrogenase	Residues 23 to 334 of 334 are 99 pct identical to residues 1 to 312 of a 312 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289804.1 malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	identified by similarity to EGAD:38063; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01763 malate dehydrogenase	identified by similarity to SP:Q59202; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01763 malate dehydrogenase, NAD-dependent	Malate dehydrogenase	identified by similarity to SP:P49814; match to protein family HMM PF00056; match to protein family HMM PF02866 malate dehydrogenase	Malate dehydrogenase, NAD-dependent	InterProMatches:IPR001236; Molecular Function: oxidoreductase activity (GO:0016491) malate dehydrogenase	malate dehydrogenase	IPR001236: Lactate/malate dehydrogenase; IPR001252: Malate dehydrogenase, active site malate dehydrogenase	Malate dehydrogenase	similar to Salmonella typhi CT18 malate dehydrogenase malate dehydrogenase	Malate dehydrogenase	similar to BR1927, malate dehydrogenase Mdh, malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	Similar to sp|Q9ZDF3|MDH_RICPR sp|Q92IA0|MDH_RICCN; Ortholog to ERGA_CDS_04180 Malate dehydrogenase	lactate/malate dehydrogenase	COG0039 Mdh malate/lactate dehydrogenases; go_function: 0016491 malate dehydrogenase	malate dehydrogenase	Similar to: HI1210, MDH_HAEIN malate dehydrogenase	Similar to Chloroflexus aurantiacus malate dehydrogenase Mdh SWALL:MDH_CHLAU (SWALL:P80040) (309 aa) fasta scores: E(): 1.3e-50, 47.55% id in 307 aa, and to Bacillus halodurans malate dehydrogenase Mdh or CitH or BH3158 SWALL:MDH_BACHD (SWALL:Q9K849) (314 aa) fasta scores: E(): 4.8e-49, 47.4% id in 308 aa putative malate dehydrogenase	Malate/lactate dehydrogenases Mdh protein	Probable malate dehydrogenase	Malate dehydrogenase	Malate dehydrogenase	identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01772 malate dehydrogenase	
RICPR00363	ADP,ATP carrier protein 2	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein homolog	ADP,ATP carrier protein	
RICPR00364	CTP synthase	CTP synthase	CTP synthase	Residues 1 to 545 of 545 are 100 pct identical to residues 1 to 545 of a 545 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289334.1 CTP synthetase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	PyrG	CTP synthetase	CTP synthase	CTP synthase	CTP synthase	conserved gene CTP synthase PyrG	CTP synthase	CTP synthase	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00337 CTP synthase	CTP synthase	CTP synthase	CTP synthetase	identified by match to protein family HMM PF00117; match to protein family HMM PF06418; match to protein family HMM TIGR00337 CTP synthase	CTP synthase	CTP synthetase	CTP synthase	CTP synthase	CTP synthase	CTP synthase	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00337 CTP synthase	
RICPR00365	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	Residues 1 to 248 of 248 are 99 pct identical to residues 1 to 248 of a 248 aa protein from Escherichia coli K12 ref: NP_415438.1 CTP:CMP-3-deoxy-D-manno-octulosonate transferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	conserved gene 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	hypothetical protein	identified by match to protein family HMM PF02348 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	identified by similarity to SP:P04951; match to protein family HMM PF02348; match to protein family HMM TIGR00466 3-deoxy-D-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase protein	3-deoxy-manno-octulosonate cytidylyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-deoxy-manno-octulosonate cytidylyltransferase	CTP:CMP-3-deoxy-D-manno-octulosonate transferase	similar to Salmonella typhi CT18 3-deoxy-manno-octulosonate cytidylyltransferase 3-deoxy-manno-octulosonate cytidylyltransferase	Similar to Escherichia coli 3-deoxy-manno-octulosonate cytidylyltransferase KpsU SWALL:KSU5_ECOLI (SWALL:P42216) (245 aa) fasta scores: E(): 5.4e-28, 40.83% id in 240 aa, and to Chlamydia muridarum 3-deoxy-manno-octulosonate cytidylyltransferase KdsB or tc0454 SWALL:KDSB_CHLMU (SWALL:Q9PKL1) (254 aa) fasta scores: E(): 8.9e-64, 68.14% id in 248 aa 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	similar to BR0038, 3-deoxy-manno-octulosonate cytidylyltransferase KdsB, 3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	3-deoxy-manno-octulosonate cytidylyltransferase	Putative 3-deoxy-manno-octulosonate cytidylyltransferase	
RICPR00366	Uncharacterized protein RP382	conserved hypothetical protein similar to NP_220763.1 hypothetical protein	Similar to sp|Q9ZDE9|Y382_RICPR rc||RC0526; Ortholog to ERWE_CDS_08800 Conserved hypothetical protein	unknown	Cytochrome c oxidase, subunit I	putative membrane protein	unknown	putative cytochrome c oxidase, subunit I	putative cytochrome c oxidase, subunit I	Heme/copper-type cytochrome/quinol oxidase, subunit 1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Membrane protein, putative	
RICPR00367	GTP cyclohydrolase 1	GTP cyclohydrolase I	Residues 1 to 222 of 222 are 100 pct identical to residues 1 to 222 of a 222 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288736.1 GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase I	conserved gene GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase I	identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063 GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	Mb3639c, folE, len: 202 aa. Equivalent to Rv3609c, len: 202 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 202 aa overlap). Probable folE (alternate gene name: gchA), GTP cyclohydrolase I (EC 3.5.4.16), equivalent to O69531|GCH1_MYCLE|FOLE|ML0223|MLCB2548.08c GTP CYCLOHYDROLASE I from Mycobacterium leprae (205 aa) FASTA scores: opt: 1112, E(): 3.8e-63, (81.95% identity in 205 aa overlap). Also highly similar to many e.g.  Q9X8I3|GCH1_STRCO|FOLE|SCE9.10c from Streptomyces coelicolor (201 aa), FASTA scores: opt: 873, E(): 4.2e-48, (67.4% identity in 187 aa overlap); Q9KCC7|MTRA|BH1646 from Bacillus halodurans (188 aa), FASTA scores: opt: 757, E(): 8.1e-41, (62.3% identity in 183 aa overlap); P19465|GCH1_BACSU|FOLE|MTRA from Bacillus subtilis (190 aa), FASTA scores: opt: 750, E(): 2.3e-40, (58.95% identity in 190 aa overlap); etc. Contains PS00860 GTP cyclohydrolase I signature 2. BELONGS TO THE GTP CYCLOHYDROLASE I FAMILY. GTP CYCLOHYDROLASE I FOLE (GTP-CH-I)	InterProMatches:IPR001474; Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Biological Process: biosynthesis (GO:0009058) GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase I	IPR001474: GTP cyclohydrolase I GTP cyclohydrolase I	similar to Salmonella typhi CT18 GTP cyclohydrolase I GTP cyclohydrolase I	GTP cyclohydrolase 1	GTP cyclohydrolase 1	GTP cyclohydrolase I	identified by match to PFAM protein family HMM PF01227 GTP cyclohydrolase I	GTP cyclohydrolase I	GTP cyclohydrolase 1	best blastp match sp|O33723|GCH1_STRPY GTP CYCLOHYDROLASE I (GTP-CH-I) GTP cyclohydrolase	
RICPR00368	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Residues 19 to 590 of 590 are 99 pct identical to residues 1 to 572 of a 572 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285888.1 proline tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	prolyl aminoacyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA synthesis factor)	conserved gene prolyl-tRNA synthase	Prolyl-tRNA synthetase (Proline--tRNA ligase)(ProRS)(Global RNA synthesis factor)	Prolyl-tRNA synthetase	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	Prolyl-tRNA synthetase	proline-tRNA ligase	identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	Prolyl-tRNA synthetase	prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	Prolyl-tRNA synthetase	identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409 prolyl-tRNA synthetase	

RICPR00369	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Residues 1 to 203 of 203 are 98 pct identical to residues 1 to 203 of a 203 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288298.1 Holliday junction helicase subunit B; branch migration; repair	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	holliday junction DNA helicase	conserved gene Holliday junction DNA helicase RuvA	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvA	identified by similarity to EGAD:92909; match to protein family HMM PF01330; match to protein family HMM PF02904; match to protein family HMM TIGR00084 Holliday junction DNA helicase RuvA	RuvA Holliday junction DNA helicase	holliday junction DNA helicase RuvA	identified by match to protein family HMM PF01330; match to protein family HMM PF07499 Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase, subunit A	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase ruvA	Holliday junction ATP-dependent DNA helicase ruvA	identified by similarity to SP:P08576; match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM TIGR00084 Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Holliday junction DNA helicase RuvA	Holliday junction ATP-dependent DNA helicase ruvA	Mb2624c, ruvA, len: 196 aa. Equivalent to Rv2593c, len: 196 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 196 aa overlap). Probable ruvA, Holliday junction binding protein (see citations below), equivalent to P40832|RUVA_MYCLE|ML0482|B1177_C2_188 HOLLIDAY JUNCTION DNA HELICASE from Mycobacterium leprae (203 aa), FASTA scores: opt: 923, E(): 9.9e-50, (76.85% identity in 203 aa overlap). Also highly similar to others e.g. Q9L290|RUVA from Streptomyces coelicolor (201 aa) (201 aa), FASTA scores: opt: 549, E(): 8.2e-27, (47.55% identity in 204 aa overlap); Q9AE10|RUVA from Corynebacterium glutamicum (Brevibacterium flavum) (206 aa), FASTA scores: opt: 440, E(): 4e-20, (47.1% identity in 206 aa overlap); P08576|RUVA_ECOLI|B1861|Z2913|ECS2571 from Escherichia coli strains K12 and O157:H7 (203 aa), FASTA scores: opt: 312, E(): 2.8e-12, (34.85% identity in 201 aa overlap); etc. BELONGS TO THE RUVA FAMILY. PROBABLE HOLLIDAY JUNCTION DNA HELICASE RUVA	InterProMatches:IPR000085; Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310) Holliday junction DNA helicase	
RICPR00370	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Residues 1 to 336 of 336 are 99 pct identical to residues 1 to 336 of a 336 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288297.1 Holliday junction helicase subunit A; branch migration; repair	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	RuvB	holliday junction DNA helicase	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction ATP-dependent DNA helicase ruvB	Highly similar to Holliday junction DNA helicase RuvB hypothetical protein	conserved gene Holliday junction DNA helicase RuvB	Highly similar to Holliday junction DNA helicase RuvB hypothetical protein	Holliday junction ATP-dependent DNA helicase ruvB	identified by similarity to SP:O32055; match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	RuvB Holliday junction DNA helicase	holliday junction DNA helicase RuvB	identified by match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase, subunit B	Holliday junction ATP-dependent DNA helicase ruvB	Holliday junction DNA helicase ruvB	Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	identified by similarity to SP:Q51426; match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM TIGR00635 Holliday junction DNA helicase RuvB	Holliday junction ATP-dependent DNA helicase ruvB	
RICPR00371	PROBABLE TRANSPORT ATP-BINDING PROTEIN MSBA	Lipid A export ATP-binding/permease protein msbA	Multidrug ABC transporter	ABC transporter ATP-binding protein; Molecular Function: ATP-binding cassette (ABC) transporter activity (GO:0004009), Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) ABC transporter	lipid A transport protein, ABC transporter,ATP-binding and membrane protein. Similar to Q47908 ValA from Francisella novicida strain U112 (572 aa).  FASTA: opt: 3334 Z-score: 3684.8 E(): 2.4e-197 Smith-Waterman score: 3334; 97.810 identity in 548 aa overlap (54-601:13-559). Similar to MSBA_HAEIN (P44407) Lipid A export ATP-binding protein from Haemophilus influenzae (587 aa). FASTA: opt: 1570 Z-score: 1735.1 E(): 9.4e-89 Smith-Waterman score: 1570; 41.913identity in 575 aa overlap. Lipid A transport protein, ABC transporter,ATP-binding and membrane protein	ABC-type multidrug transport system, ATPase and permease component	Multidrug resistance protein	ATP-binding transport protein; multicopy suppressor of HtrB	ABC transporter related	ABC transporter, transmembrane region	ABC transporter related	Lipid A export ATP-binding/permease protein MsbA	Multidrug resistance protein	putative transmembrane component of ABC transporter similarity:fasta; with=UniProt:MSBA_ECOLI (EMBL:C85617); Escherichia coli.; msbA; Lipid A export ATP-binding/permease protein msbA.; length=582; id 36.380; 558 aa overlap; query 34-587; subject 26-579 similarity:fasta; with=UniProt:Q92T26 (EMBL:SME591782); Rhizobium meliloti (Sinorhizobium meliloti).; PUTATIVE ATP-BINDING ABC TRANSPORTER PROTEIN.; length=601; id 75.966; 595 aa overlap; query 1-594; subject 1-594	probable multidrug ABC transporter, ATP binding protein similar to SMc02836 [Sinorhizobium meliloti], mlr4641 [Mesorhizobium loti] and BRA1050 [Brucella suis1330] Similar to swissprot:Q92T26 Putative location:bacterial inner membrane Psort-Score: 0.4715; go_component: membrane [goid 0016020]; go_function: ATP binding [goid 0005524]; go_function: nucleotide binding [goid 0000166]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: transport [goid 0006810]	ABC transporter related	Lipid A export ATP-binding/permease protein MsbA	ATP-binding cassette (ABC) LPS transporter,permease	pseudo ABC transporter, ATP-binding/permease protein (fragment)	lipid A ABC transporter, ATP-binding/permease protein	ABC transporter related	Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA	Lipid A transport protein, ABC transporter,ATP-binding and membrane protein lipid A transport protein, ABC transporter,ATP-binding and membrane protein. Similar to Q47908 ValA from Francisella novicida strain U112 (572 aa).  FASTA: opt: 3334 Z-score: 3684.8 E(): 2.4e-197 Smith-Waterman score: 3334; 97.810 identity in 548 aa overlap (54-601:13-559). Similar to MSBA_HAEIN (P44407) Lipid A export ATP-binding protein from Haemophilus influenzae (587 aa). FASTA: opt: 1570 Z-score: 1735.1 E(): 9.4e-89 Smith-Waterman score: 1570; 41.913identity in 575 aa overlap.	phospholipid-lipopolysaccharide ABC transporter	lipid A export ATP-binding/permease protein	ABC transporter related PFAM: ABC transporter, transmembrane region; ABC transporter related SMART: AAA ATPase KEGG: ctc:CTC00426 multidrug resistance ABC transporter	ABC transporter, ATP-binding protein/permease	Lipid A export ATP-binding/permease protein MsbA	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA KEGG: hch:HCH_02703 lipid A export ATP-binding/permease protein MsbA TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA PFAM: ABC transporter, transmembrane region; ABC transporter related SMART: AAA ATPase	
RICPR00372	Putative uncharacterized protein RP388	truncated peptide ABC transporter ATP binding/permease protein, truncated	ABC transporter ATP-binding protein - glutamine, truncation	truncated peptide-2 ABC exporter (Pep2E) family, ATP binding/membrane-spanning protein, truncated	go_component: mitochondrial inner membrane [goid 0005743]; go_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; go_process: iron ion homeostasis [goid 0006879] ABC multidrug transporter, putative	ABC transporter ATP-binding protein	lantibiotic transport ATP-binding protein	polar amino acid uptake ABC transporter (PAAT) family, ATP-binding protein, truncation identified by similarity to SP:P48243; match to protein family HMM PF00005	Putative ABC RTX toxin transporter, fused ATP binding/permease domains	pseudo ABC transporter, ATP-binding/permease protein (fragment)	ABC RTX toxin transporter, fused ATP- binding/permease domains	ABC-type oligopeptide transport, ATP-binding component oppD fragment 4 (P24137) Oligopeptide transport ATP-binding protein oppF High confidence in function and specificity	Putative oligopeptide transport protein	ABC RTX toxin transporter, fused ATP binding/permease domains	ABC-type antimicrobial peptide transport system, ATPase component	jgi|Lotgi1|146605|e_gw1.928.1.1	Transport ATP-binding protein MsbA	status:Predicted	Bacteriocin processing peptidase	Putative salivaricin A modification enzyme	ABC transporter, ATP-binding protein	ABC transporter, ATP-binding protein	pseudo putative bacteriocin transport/processing ATP-binding protein (fragment) Probable gene remnant. Similar to the C-terminal region of Streptococcus pyogenes serotype M3 bacteriocin processing peptidase/bacteriocin export ABC transporter UniProt:Q1J803 (EMBL:CP000262 (717 aa) fasta scores: E()=3e-32, 81.935% id in 155 aa	Multidrug resistance protein 1	Truncated ABC transporter, ATP-binding/permease protein	jgi|Capca1|117232|e_gw1.29142.2.1	Probable permease protein of ABC transporter system	ABC transporter ATP-binding protein	jgi|Emihu1|45733|gw1.95.21.1	

RICPR00373	PENICILLIN-BINDING PROTEIN DACF	Residues 8 to 331 of 338 are 98 pct identical to residues 1 to 327 of a 400 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286605.1 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6	D-Ala-D-Ala Carboxypeptidase	DacA protein	D-alanyl-D-alanine carboxypeptidase	DacB	D-alanyl-D-alanine carboxypeptidase	Mb2935, dacB2, len: 291 aa. Equivalent to Rv2911, len: 291 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 291 aa overlap). Probable dacB2, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein) (EC 3.4.16.4), an ala-rich protein. Highly similar (except in N-terminus) to Q9CCM2|ML0691 PUTATIVE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE from Mycobacterium leprae (411 aa), FASTA scores: opt: 749, E(): 9.3e-39, (46.75% identity in 276 aa overlap). Also similar to penicillin binding proteins / D-alanyl-D-alanine carboxypeptidases e.g. Q9KCJ8|SC4G1.16c D-ALANYL-D-ALANINE CARBOXYPEPTIDASE from Streptomyces coelicolor (382 aa), FASTA scores: opt: 386, E(): 2.1e-16, (31.25% identity in 285 aa overlap); P35150|DACB_BACSU PENICILLIN-BINDING PROTEIN 5* PRECURSOR from Bacillus subtilis (382 aa), FASTA scores: opt: 384, E(): 3.6e-17, (30.7% identity in 244 aa overlap); Q9K8X5|DACB|BH2877 D-ALANYL-D-ALANINE CARBOXYPEPTIDASE (PENICILLIN-BINDING PROTEIN 5) from Bacillus halodurans (395 aa), FASTA scores: opt: 359, E(): 9.7e-15, (30.3% identity in 241 aa overlap); P33364|PBP7_ECOLI|PBPG|B2134 penicillin-binding protein 7 precursor from Escherichia coli strain K12 (313 aa), FASTA scores: opt: 273, E(): 7.5e-10, (27.8% identity in 263 aa overlap); etc. Also similar to O53380|Rv3330|MTV016.30 PENICILLIN-BINDING PROTEIN from Mycobacterium tuberculosis (405 aa), FASTA scores: opt: 746, E(): 1.4e-38, (47.0% identity in 266 aa overlap). Seems to contain PF00768 Peptidase_S11 domain PFAM. BELONGS TO PEPTIDASE FAMILY S11; ALSO KNOWN AS THE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 1 FAMILY. Thought to be a membrane-bound protein. Note that previously known as dacB. PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2 (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE)	D-alanyl-D-alanine carboxypeptidase	similar to Salmonella typhi CT18 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor) D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)	similar to BR1072, D-alanyl-D-alanine carboxypeptidase D-alanyl-D-alanine carboxypeptidase	Putative uncharacterized protein gbs0142	identified by match to PFAM protein family HMM PF00768 penicillin-binding protein 4, putative	Serine-type D-Ala-D-Ala carboxypeptidase	best blastp match emb|CAC21495.1| (AJ300704) DD-carboxypeptidase [Enterococcus faecalis] putative DD-carboxypeptidase	identified by match to protein family HMM PF00768 D-alanyl-D-alanine carboxypeptidase, putative	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor)	Putative D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase fraction A penicillin-binding protein 5	D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	Penicillin-binding protein DacF precursor	identified by match to protein family HMM PF00768 D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	D-alanyl-D-alanine carboxypeptidase 1, S11 family	serine-type D-ala-D-ala carboxypeptidase	Serine-type D-Ala-D-Ala carboxypeptidase	D-alanyl-D-alanine carboxypeptidase	
RICPR00374	RlpA-like protein	Rare lipoprotein A precursor	Rare lipoprotein A	Rare lipoprotein A	Rare lipoprotein A	Rare lipoprotein A	lipoprotein	Rare lipoprotein A	Rare lipoprotein A	
RICPR00375	Putative uncharacterized protein RP391	Putative uncharacterized protein	Similar to unknown protein YraP of Escherichia coli	Predicted lipoprotein, OsmY ortholog	Similar to sp|P35664|YGS2_ANACE rp||RP391; Ortholog to ERGA_CDS_06880 Conserved hypothetical protein	conserved hypothetical protein similar to NP_360175.1 hypothetical protein	Similar to: HI1658, YRAP_HAEIN predicted periplasmic or secreted lipoprotein	conserved hypothetical protein	possible periplasmic protein Putative phospholipid-binding domain	Similar to sp|P35664|YGS2_ANACE rp||RP391; Ortholog to ERWE_CDS_06970 Conserved hypothetical protein	ortholog to Escherichia coli bnum: b3150; MultiFun: Transport 4.9.B putative periplasmic protein	unknown	Code: R; COG: COG2823 putative periplasmic protein	Transport-associated domain	periplasmic or secreted lipoprotein	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	Code: R; COG: COG2823 putative periplasmic protein	putative osmotically inducible protein identified by similarity to SP:P27291; match to protein family HMM PF04972	Transport-associated	conserved hypothetical protein	transport-associated	Putative periplasmic or secreted lipoprotein	Code: R; COG: COG2823 putative periplasmic protein	Transport-associated	putative osmotically inducible protein identified by similarity to SP:P27291; match to protein family HMM PF04972	Putative uncharacterized protein	Transport-associated precursor	lipoprotein, putative	putative osmotically inducible protein identified by similarity to SP:P27291; match to protein family HMM PF04972	
RICPR00376	Probable intracellular septation protein	Residues 1 to 179 of 179 are 99 pct identical to residues 1 to 179 of a 179 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287497.1 orf, conserved hypothetical protein	Probable intracellular septation protein	Probable intracellular septation protein	Probable intracellular septation protein	Probable intracellular septation protein	similar to intracellular septation protein hypothetical protein	conserved gene intracellular septation protein A	similar to intracellular septation protein hypothetical protein	identified by match to protein family HMM PF04279 intracellular septation protein A	Probable intracellular septation protein	Intracellular septation protein	IPR006008: Intracellular septation protein A putative intracellular septation protein	similar to Salmonella typhi Ty2 putative intracellular septation protein putative intracellular septation protein	similar to BR1935, intracellular septation protein A IspZ, intracellular septation protein A	Intracellular septation protein	Probable intracellular septation protein	Putative morphogene	Intracellular septation protein A	COG2917 intracellular septation protein A	intracellular septation protein	Similar to: HI0826, ISPZ_HAEIN probable intracellular septation protein A	Intracellular septation protein A Hypothetical protein	Probable intracellular septation protein	Similar to ISPZ_RALSO (Q8XYL2) Probable intracellular septation protein from Ralstonia solanacearum (Pseudomonas solanacearum) (186 aa). FASTA: opt: 549 Z-score: 659.0 E(): 8.2e-29 Smith-Waterman score: 549; 38.150 identity in 173 aa overlap. intracellular septation protein A family protein	Intracellular septation protein A	Probable intracellular septation protein	Probable intracellular septation protein	intracellular septation protein A	
RICPR00377	Putative uncharacterized protein RP393	high-affinity iron permease	putative membrane protein	identified by match to protein family HMM PF03239 membrane protein, putative	identified by match to protein family HMM PF03239 membrane protein, putative	Iron permease FTR1	FTR1 family protein	Code: P; COG: COG0672 High-affinity iron permease	Iron permease FTR1	putative permease	iron permease FTR1	Iron permease FTR1	Iron permease FTR1	FTR1 family protein	Iron permease FTR1	Iron permease FTR1	iron permease, FTR1 family	Ferrous iron permease efeU	iron permease FTR1 PFAM: iron permease FTR1 KEGG: pfl:PFL_3255 membrane protein, putative	Iron permease FTR1	Ferrous iron permease efeU	iron permease FTR1 PFAM: iron permease FTR1 KEGG: bur:Bcep18194_A6336 iron permease FTR1	iron permease FTR1	High-affinity Fe2+/Pb2+ permease	Iron permease FTR1	iron permease FTR1 PFAM: iron permease FTR1 KEGG: rru:Rru_A2597 iron permease FTR1	Iron permease FTR1	iron permease FTR1 PFAM: iron permease FTR1 KEGG: bcn:Bcen_2373 iron permease FTR1	Oxidase-dependent Fe2+ Transporter, (OFeT)Family, FTR1-like	
RICPR00378	Uncharacterized protein RP394	similar to BRA0382, hypothetical protein hypothetical protein	This gene assignment is based partly on a multiple alignment of the best pairwise matches. conserved hypothetical protein	conserved hypothetical protein	unknown	conserved hypothetical protein	unknown	hypothetical protein	Hypothetical protein precursor	conserved hypothetical protein	Hypothetical protein precursor	Putative exported protein	conserved hypothetical protein KEGG: rpc:RPC_3632 hypothetical protein	conserved hypothetical protein	Predicted periplasmic lipoprotein involved in iron transport	Hypothetical protein	conserved hypothetical protein KEGG: bmb:BruAb2_0819 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein, conserved	hypothetical protein	Putative uncharacterized protein	Putative exported protein	Putative uncharacterized protein precursor	
RICPR00379	Uncharacterized protein RP395	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	FKBP-type peptidyl-prolyl cis-trans isomerase	Putative uncharacterized protein	Putative uncharacterized protein	FKBP-type peptidyl-prolyl cis-trans isomerase	
RICPR00380	Putative dioxygenase RP396	Protocatechuate-3,4-dioxygenase, beta subunit	Intradiol ring-cleavage dioxygenase	Protocatechuate-3,4-dioxygenase, beta subunit	dioxygenase family protein identified by similarity to SP:P15110; match to protein family HMM PF00775	Putative uncharacterized protein	Protocatechuate-3,4-dioxygenase, beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	protocatechuate 3,4-dioxygenase beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	Dioxygenase precursor	Dioxygenase, putative	Putative protocatechuate-3,4-dioxygenase, beta subunit	
RICPR00380	Putative dioxygenase RP396	Protocatechuate-3,4-dioxygenase, beta subunit	Intradiol ring-cleavage dioxygenase	Protocatechuate-3,4-dioxygenase, beta subunit	dioxygenase family protein identified by similarity to SP:P15110; match to protein family HMM PF00775	Putative uncharacterized protein	Protocatechuate-3,4-dioxygenase, beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	protocatechuate 3,4-dioxygenase beta subunit	Protocatechuate-3,4-dioxygenase, beta subunit	Dioxygenase precursor	Dioxygenase, putative	Putative protocatechuate-3,4-dioxygenase, beta subunit	
RICPR00381	THIOL:DISULFIDE INTERCHANGE PROTEIN TLPA	Thioredoxin	identified by similarity to SP:P33926 putative electron transfer protein	thiol:disulfide interchange protein	Thiol:disulfide interchange protein TlpA	Thioredoxin	putative thioredoxin	Thiol:disulfide interchange protein tlpA	Redoxin PFAM: Redoxin: (3.4e-15) KEGG: sil:SPO0331 thiol:disulfide interchange protein, putative, ev=5e-63, 64% identity	Redoxin domain protein precursor	Redoxin domain protein	secreted protein containing a thioredoxin domain	Redoxin domain protein PFAM: Redoxin domain protein KEGG: pol:Bpro_3502 hypothetical protein	thiol:disulfide interchange protein tlpA, putative	conserved hypothetical thioredoxin Hypothetical thioredoxin. Homology with BPP3919 of B. parapertussis of 38%. Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. Tigrfam: dsbE: periplasmic protein thiol:disulfi signal peptide probable 1 TMHs Family membership	Redoxin domain protein PFAM: Redoxin domain protein KEGG: shm:Shewmr7_0232 redoxin domain protein	Antioxidant, AhpC/TSA family	Redoxin PFAM: Redoxin KEGG: mlo:mll3505 thioredoxin-like protein	Cytochrome c biogenesis ResA protein	Putative thioredoxin	thioredoxin, putative KEGG: son:SO0269 thioredoxin, putative	Alkyl hydroperoxide reductase, Thiol specific antioxidant, Mal allergen precursor	Thiol:disulfide interchange protein tlpA	Thiol:disulfide interchange protein tlpA	Thiol:disulfide interchange protein tlpA	Thiol:disulfide interchange protein tlpA	StoA	thiol:disulfide interchange protein	Thiol:disulfide interchange protein TlpA	
RICPR00382	POSSIBLE PROTEASE SOHB	predicted endopeptidase IV, S49 family	identified by match to protein family HMM PF01343 peptidase, family S49	Protease protein	Putative protease	Similar to Chlamydia pneumoniae protease sohB or cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) fasta scores: E(): 1.4e-87, 69.9% id in 319 aa putative exported protease	Protease sohB	Putative protease	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 peptidase, U7 family	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative protease; putative signal peptide peptidase sppA	Putative signal peptide peptidase SppA	Peptidase, putative	Similar to Q87YG1 Signal peptide peptidase SppA, 36K type from Pseudomonas syringae (332 a). FASTA: opt: 839 Z-score: 1007.2 E(): 3.3e-48 Smith-Waterman score: 839; 46.622 identity in 296 aa overlap ORF ftt1746 Peptidase	predicted periplasmic serine proteases (ClpP class)	Peptidase family S49	Periplasmic serine protease, ClpP class	Hypothetical endopeptidase IV	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	Peptidase S49	Signal peptide peptidase SppA	Best Blastp Hit: emb|CAB83609.1| (AL162752) putative protease [Neisseria meningitidis] COG0616 Periplasmic serine proteases putative protease	peptidase S49	Peptidase S49, SppA	Member of the U7 Peptidase family Peptidase family S49	peptidase S49	peptidase S49	Peptidase S49, SppA	Signal peptide peptidase SppA, 36K type	
RICPR00383	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Residues 2 to 152 of 152 are 99 pct identical to residues 1 to 151 of a 151 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290220.1 deoxyuridinetriphosphatase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase)	conserved gene deoxyuridinetriphosphatase	Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase)	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'triphosphate nucleotidohydrolase protein	Deoxyuridine 5'-triphosphate nucleotidohydrolase	Mb2716c, dut, len: 154 aa. Equivalent to Rv2697c, len: 154 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 154 aa overlap). Probable dut, deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23), equivalent to Q49992|DUT_MYCLE|ML1028 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE from Mycobacterium leprae (154 aa), FASTA scores: opt: 928, E(): 2.1e-51, (90.25% identity in 154 aa overlap). Also highly similar to others e.g. O54134|DUT_STRCO|SC2E9.09 from Streptomyces coelicolor (183 aa), FASTA scores: opt: 534, E(): 1.2e-26, (56.1% identity in 148 aa overlap); O66592|DUT_AQUAE|AQ_220 from Aquifex aeolicus (150 aa), FASTA scores: opt: 398, E(): 3.3e-18, (48.05% identity in 152 aa overlap); Q9X3X5|DUT_ZYMMO from Zymomonas mobilis (146 aa), FASTA scores: opt: 396, E(): 4.4e-18, (49.0% identity in 147 aa overlap); etc. BELONGS TO THE DUTPASE FAMILY. PUTATIVE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE DUT (DUTPASE) (DUTP PYROPHOSPHATASE) (DEOXYURIDINE 5'-TRIPHOSPHATASE) (DUTP DIPHOSPHATASE) (DEOXYURIDINE-TRIPHOSPHATASE)	phage-related protein deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark dUTPase	deoxyuridinetriphosphatase	dUTPase	similar to Salmonella typhi CT18 deoxyuridine 5'-triphosphate nucleotidohydrolase deoxyuridine 5'-triphosphate nucleotidohydrolase	Similar to Rhizobium meliloti deoxyuridine 5'-triphosphate nucleotidohydrolase Dut or DnaS or r00345 or smc00461 SWALL:DUT_RHIME (SWALL:Q92SM6) (160 aa) fasta scores: E(): 1.4e-24, 54.28% id in 140 aa, Chlamydophila caviae deoxyuridine 5`-triphosphate nucleotidohydrolase Dut or cca00347 SWALL:Q823Q9 (EMBL:AE016995) (147 aa) fasta scores: E(): 1.1e-49, 93.19% id in 147 aa and Brucella melitensis, and Brucella suis deoxyuridine 5'-triphosphate nucleotidohydrolase dut or bmei0358 or br1675 SWALL:DUT_BRUME (SWALL:Q8YIT4) (157 aa) fasta scores: E(): 6.5e-25, 54.22% id in 142 aa deoxyuridine 5'-triphosphate nucleotidohydrolase	Deoxyuridine 5'-triphosphate nucleotidohydrolase	similar to BR1675, deoxyuridine 5-triphosphate nucleotidohydrolase Dut, deoxyuridine 5-triphosphate nucleotidohydrolase	Putative uncharacterized protein gbs0108	
RICPR00384	PUTATIVE SOLUBLE LYTIC MUREIN TRANSGLYCOSYLASE	Soluble lytic murein transglycosylase	identified by match to protein family HMM PF01464 transglycosylase, Slt family	Murein transglycosylase protein	similar to BR0643, transglycosylase SLT domain protein transglycosylase SLT domain protein	Soluble lytic murein transglycosylase	COG0741 transglycosylase	Murein transglycosylase	putative soluble lytic murein transglycosylase precursor (slt)	Soluble lytic murein transglycosylase precursor	lytic transglycosylase	Citation: Proc. Natl. Acad. Sci. U.S.A. 98 (7), 4136-4141 (2001) Putative soluble lytic transglycosylase	Lytic transglycosylase, catalytic	Lytic transglycosylase, catalytic	Lytic transglycosylase, catalytic	Soluble lytic murein transglycosylase precursor	putative soluble lytic murein transglycosylase precursor Similar to Escherichia coli O157:H7 slt soluble lytic murein transglycosylase precursor (ec 3.2.1.-) (slt70) (exomuramidase). UniProt:SLT_ECOLI (EMBL:H86138) (645 aa),and to Agrobacterium tumefaciens (strain C58/ATCC 33970) soluble lytic transglycosylase. UniProt:Q8UGL5 (694 aa) similarity:fasta; with=UniProt:SLT_ECOLI (EMBL:H86138); Escherichia coli O157:H7.; slt; Soluble lytic murein transglycosylase precursor (EC 3.2.1.-) (Slt70) (Exomuramidase).; length=645; id 27.648; 557 aa overlap; query 121-647; subject 118-634 similarity:fasta; with=UniProt:Q8UGL5; Agrobacterium tumefaciens (strain C58/ATCC 33970).; Soluble lytic transglycosylase.; length=694; id 66.968; 663 aa overlap; query 1-658; subject 36-693	Lytic transglycosylase, catalytic	Lytic transglycosylase, catalytic PFAM: Lytic transglycosylase, catalytic: (4.5e-15) Tetratricopeptide TPR_4: (0.051) KEGG: sil:SPO3555 transglycosylase, Slt family, ev=0.0, 61% identity	Lytic transglycosylase, catalytic	probable murein transglycosylase protein similar to SMc02403 [Sinorhizobium meliloti] and AGR_C_1881p [Agrobacterium tumefaciens] Similar to swissprot:Q92R56 Putative location:bacterial periplasmic space Psort-Score: 0.9409; go_function: hydrolase activity, acting on glycosyl bonds [goid 0016798]; go_function: hydrolase activity [goid 0016787]; go_process: carbohydrate metabolism [goid 0005975]	Lytic transglycosylase, catalytic	Lytic transglycosylase, catalytic precursor	Soluble lytic murein transglycosylase	Lytic transglycosylase, catalytic	Transglycosylase, Slt family	transglycosylase COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)	Soluble lytic murein transglycosylase and related regulatory protein	Lytic transglycosylase, catalytic PFAM: Lytic transglycosylase, catalytic KEGG: rsp:RSP_0881 putative soluble lytic transglycosylase	

RICPR00386	Putative carboxypeptidase RP402	Probable transmembrane protein	hypothetical protein	Uncharacterized protein	Peptidase U61, LD-carboxypeptidase A	muramoyltetrapeptide carboxypeptidase	Putative uncharacterized protein yrgH	Hypothetical protein RC0549	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	conserved hypothetical protein	Similar to Escherichia coli muramoyltetrapeptide carboxypeptidase LdcA or B1192 SWALL:LDCA_ECOLI (SWALL:P76008) (304 aa) fasta scores: E(): 8.4e-12, 27.16% id in 254 aa, and to Bacteroides thetaiotaomicron putative carboxypeptidase BT2549 SWALL:Q8A4P8 (EMBL:AE016936) (302 aa) fasta scores: E(): 1.1e-86, 73.48% id in 298 aa, and to Bacillus cereus muramoyltetrapeptide carboxypeptidase bc1367 SWALL:Q81G43 (EMBL:AE017002) (306 aa) fasta scores: E(): 4.7e-27, 34.53% id in 304 aa putative muramoyltetrapeptide carboxypeptidase	Similar to Y402_RICPR (Q9ZDC9) Hypothetical protein RP402 from Rickettsia prowazekii (317 aa). FASTA: opt: 431 Z-score: 518.0 E(): 5.9e-21 Smith-Waterman score: 432; 28.909 identity in 339 aa overlap ORF ftt0101 conserved membrane hypothetical protein	Putative resistance protein MccF	identified by similarity to SP:P76008; match to protein family HMM PF02016 muramoyltetrapeptide carboxypeptidase, putative	identified by match to protein family HMM PF02016 LD-carboxypeptidase family protein	Muramoyltetrapeptide carboxypeptidase	Peptidase U61, LD-carboxypeptidase A	Microcin C7 self-immunity protein	Putative uncharacterized protein	Code: V; COG: COG1619 conserved hypothetical protein	Code: V; COG: COG1619 conserved hypothetical protein	uncharacterized protein family UPF0094	Twin-arginine translocation pathway signal	Putative uncharacterized protein	hypothetical protein	Peptidase U61, LD-carboxypeptidase A	muramoyltetrapeptide carboxypeptidase, putative	Peptidase U61, LD-carboxypeptidase A	Microcin C7 self-immunity protein	
RICPR00387	Uncharacterized protein RP403	conserved hypothetical protein	RecB family exonuclease	Putative uncharacterized protein	Putative uncharacterized protein	RecB family exonuclease	RecB family exonuclease	Putative uncharacterized protein	ATP-dependent nuclease subunit B	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00388	Putative glutamine amidotransferase-like protein RP404	Putative uncharacterized protein lp_0117	Glutamine amidotransferase, class I	glutamine amidotransferase (class I), putative	Putative uncharacterized protein	POSSIBLE AMIDOTRANSFERASE	Mb2884c, -, len: 308 aa. Equivalent to Rv2859c, len: 308 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 308 aa overlap). Possible amidotransferase (EC 6.3.5.- or 2.-.-.-), equivalent (but longer 58 aa) to Q9CBU9|ML1573 POSSIBLE AMIDOTRANSFERASE from Mycobacterium leprae (249 aa), FASTA scores: opt: 1226, E(): 3e-64, (71.55% identity in 239 aa overlap).  Also similar to other amidotransferases and hypothetical proteins, but shorter in N-terminus e.g. O88072|SCI35.37 HYPOTHETICAL 25.3 KDA PROTEIN from Streptomyces coelicolor (242 aa), FASTA scores: opt: 683, E(): 1.2e-32, (47.65% identity in 235 aa overlap); AAK79730|Q97I88|CAC1764 PREDICTED GLUTAMINE AMIDOTRANSFERASE from Clostridium acetobutylicum (241 aa), FASTA scores: opt: 458, E(): 1.6e-19, (32.95% identity in 246 aa overlap); AAK75201|Q97QV9|SP1089 GLUTAMINE AMIDOTRANSFERASE CLASS I from Streptococcus pneumoniae (229 aa), FASTA scores: opt: 431, E(): 5.6e-18, (34.75% identity in 236 aa overlap); etc. Contains three 17 aa repeats at the N-terminus very similar to those in other Mycobacterium tuberculosis proteins e.g. Q10699|YY30_MYCTU|Rv2090|MT2151|MTCY49.30 PUTATIVE 5'-3' EXONUCLEASE RV2090 (EC 3.1.11.-). POSSIBLE AMIDOTRANSFERASE	Putative uncharacterized protein gbs1690	identified by match to PFAM protein family HMM PF00117 glutamine amidotransferase, class I	Putative Glutamine amidotransferase	Putative uncharacterized protein	glutamine amidotransferase (class I), putative	Possible amidotransferase	Hypothetical glutamine amidotransferase	Predicted glutamine amidotransferases	identified by match to protein family HMM PF00117; match to protein family HMM PF07722 glutamine amidotransferase class I domain protein	Code: R; COG: COG2071 probable amidotransferase subunit	identified by similarity to GB:AAM25818.1; match to protein family HMM PF00117; match to protein family HMM PF07722 putative glutamine amidotransferase	Glutamine amidotransferase, class I	peptidase C26	Peptidase C26	Putative glutamine amidotransferase	predicted glutamine amidotransferase COG2071	Glutamine amidotransferase, class I COG2071 [R] Predicted glutamine amidotransferases	peptidase C26	Putative glutamine amidotransferase	Hypothetical protein	Glutamine amidotransferase, class I	glutamine amidotransferase related enzyme	
RICPR00389	Probable cytochrome c oxidase subunit 1	Probable cytochrome c oxidase polypeptideI(Cytochrome aa3 subunit 1) transmembrane protein	cytochrome c oxidase, subunit I	conserved gene cytochrome c oxidase, subunit I	cytochrome c oxidase, subunit I	cytochrome c oxidase subunit I	identified by similarity to SP:P33517; match to protein family HMM PF00115 cytochrome c oxidase, aa3-type, subunit I	Cytochrome-c oxidase, subunit I	Cytochrome c oxidase subunit I	Probable cytochrome c oxidase subunit 1	Cytochrome c oxidase, subunit I	Probable cytochrome c oxidase subunit 1	Mb3069c, ctaD, len: 573 aa. Equivalent to Rv3043c, len: 573 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 573 aa overlap). Probable ctaD, integral membrane cytochrome C oxidase polypeptide I (EC 1.9.3.1), equivalent to Q9CBQ5|ML1728 from Mycobacterium leprae (574 aa), FASTA scores: opt: 3738, E(): 3.8e-216, (95.4% identity in 566 aa overlap). Also similar to other CYTOCHROME C OXIDASES POLYPEPTIDE I e.g. Q9AEL9|CTAD from Corynebacterium glutamicum (Brevibacterium flavum) (584 aa), FASTA scores: opt: 3065, E(): 6.8e-176, (72.65% identity in 567 aa overlap); Q9X813|SC6G10.28c from Streptomyces coelicolor (578 aa), FASTA scores: opt: 2888, E(): 2.6e-165, (71.7% identity in 544 aa overlap); Q9K451|CTAD from Streptomyces coelicolor (573 aa), FASTA scores: opt: 2757, E(): 1.8e-157, (70.2% identity in 537 aa overlap). Contains PS00077 Cytochrome c oxidase subunit I, copper B binding region signature. BELONGS TO THE HEME-COPPER RESPIRATORY OXIDASE FAMILY. PROBABLE CYTOCHROME C OXIDASE POLYPEPTIDE I CTAD (CYTOCHROME AA3 SUBUNIT 1)	cytochrome caa3 oxidase subunit I CoxA	Cytochrome c oxidase polypeptide I+III	Cytochrome c oxidase, subunit 1	Cytochrome c oxidase, subunit I	Similar to sp|O54069|COX1_RICPR; Ortholog to ERGA_CDS_08080 Probable cytochrome c oxidase polypeptide I	cytochrome c and quinol oxidase polypeptide I	COG0843 CyoB Heme/copper-type cytochrome/quinol oxidases, subunit 1 cytochrome c oxidase subunit I	Cytochrome c oxidase, subunit I	Cytochrome c oxidase, subunit I	Similar to Corynebacterium glutamicum cytochrome c oxidase subunit I CtaD SWALL:Q93HZ5 (EMBL:AB052748) (584 aa) fasta scores: E(): 2.6e-138, 63.18% id in 527 aa cytochrome c oxidase subunit I	Cytochrome C oxidase, subunit 1	identified by similarity to SP:P31833; match to protein family HMM PF00115 cytochrome c oxidase, subunit I	chain I cytochrome-c oxidase	Probable cytochrome c oxidase polypeptide I (EC 1.9.3.1) (Cytochrome AA3 subunit 1).,Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B (By similarity). cytochrome c oxidase subunit I	Similar to sp|O54069|COX1_RICPR; Ortholog to ERWE_CDS_08180 Probable cytochrome c oxidase polypeptide I	
RICPR00390	Probable cytochrome c oxidase subunit 2	cytochrome c oxidase subunit II	identified by similarity to SP:P08306; match to protein family HMM PF00116; match to protein family HMM PF02790 cytochrome c oxidase, subunit II	Cytochrome c oxidase subunit 2	Cytochrome c oxidase subunit 2	Cytochrome c oxidase subunit 2	InterProMatches:IPR000345, IPR001505; Molecular Function: electron transporter activity (GO:0005489), Biological Process: electron transport (GO:0006118), Molecular Function: heme binding (GO:0020037), Molecular Function: copper ion binding (GO:0005507) cytochrome caa3 oxidase (subunit II)	cytochrome caa3 oxidase subunit II CoxB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cytochrome C oxidase subunit II	Cytochrome c oxidase subunit 2	Cytochrome c oxidase, subunit 2	similar to BR0467, cytochrome c oxidase, subunit II CoxB, cytochrome c oxidase, subunit II	Cytochrome c oxidase subunit 2	putative cytochrome c oxidase, subunit II	Similar to sp|Q9ZDC6|COX2_RICPR; Ortholog to ERGA_CDS_08070 Probable cytochrome c oxidase polypeptide II	COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 cytochrome c oxidase subunit II	Cytochrome c oxidase subunit 2	Cytochrome C oxidase, subunit 2	cytochrome C oxidase subunit II	probable cytochrome c oxidase polypeptide II (Cytochrome aa3 subunit 2)	Similar to sp|Q9ZDC6|COX2_RICPR; Ortholog to ERWE_CDS_08170 Probable cytochrome c oxidase polypeptide II	identified by similarity to SP:P08306; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790 cytochrome c oxidase, subunit II	cytochrome c oxidase subunit II	Cytochrome c oxidase polypeptide II	cytochrome c oxidase, subunit II	cytochrome-c-like terminal oxidase (EC 1.9.3.1), subunit II 1	Putative cytochrome c oxidase, subunit II precursor	Cytochrome-c oxidase	Copper center Cu(A):Cytochrome c oxidase, subunit II	
RICPR00391	Putative uncharacterized protein RP407	YebA protein	similar to membrane proteins related to metalloendopeptidases hypothetical protein	conserved gene peptidase, M23/M37 family	similar to membrane proteins related to metalloendopeptidases hypothetical protein	Putative uncharacterized protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Peptidase, M23/M37 family	Peptidase, M23/M37 family	Putative peptidase	M23/M37 peptidase	identified by match to protein family HMM PF01551 peptidase, M23/M37 family	identified by match to protein family HMM PF01551 peptidase, M23/M37 family	Peptidase M23B	Membrane proteins related to metalloendopeptidases	peptidase family protein	Peptidase M23B	Peptidase M23B	Membrane-bound metallopeptidase	Peptidase M23B	peptidase, M23/M37 family	Peptidase M23B precursor	Peptidase M23B	membrane proteins related to metalloendopeptidases	Peptidase M23B precursor	peptidoglycan-specific endopeptidase, M23 family	Peptidase M23B precursor	peptidase M23B PFAM: peptidase M23B KEGG: neu:NE1430 peptidase family M23/M37	peptidase M23B PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein KEGG: shm:Shewmr7_2963 peptidase M23B	
RICPR00392	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Residues 1 to 164 of 164 are 98 pct identical to residues 1 to 164 of a 164 aa protein from Escherichia coli K12 ref: NP_414568.1 prolipoprotein signal peptidase (SPase II)	Lipoprotein signal peptidase	Signal peptidase II/lipoprotein signal peptidase family	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	identified by similarity to EGAD:101825; match to protein family HMM PF01252; match to protein family HMM TIGR00077 lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	prolipoprotein signal peptidase (spase II)	Lipoprotein signal peptidase	Lipoprotein signal peptidase	identified by similarity to SP:P00804; match to protein family HMM PF01252; match to protein family HMM TIGR00077 lipoprotein signal peptidase	InterProMatches:IPR001872; processing of prolipoproteins,Molecular Function: aspartic-type endopeptidase activity (GO:0004190), Biological Process: proteolysis and peptidolysis (GO:0006508), Cellular Component: membrane (GO:0016020) signal peptidase II LspA	signal peptidase II	Lipoprotein signal peptidase	IPR001872: Peptidase A8, signal peptidase II prolipoprotein signal peptidase (SPase II)	Lipoprotein signal peptidase	similar to Salmonella typhi CT18 lipoprotein signal peptidase lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	Lipoprotein signal peptidase	lipoprotein signal peptidase	identified by match to PFAM protein family HMM PF01252 lipoprotein signal peptidase	
RICPR00393	Uncharacterized protein RP409	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00394	UDP-N-acetylmuramoylalanine--D-glutamate ligase	udp-n-acetylmuramoylalanine--d-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	Residues 1 to 438 of 438 are 99 pct identical to residues 1 to 438 of a 438 aa protein from Escherichia coli K12 ref: NP_414630.1 UDP-N-acetylmuramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	conserved gene UDP-N-muramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine-D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by similarity to SP:P14900; match to protein family HMM PF02875; match to protein family HMM TIGR01087 UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	UDP-N-acetylmuramoylalanine--D-glutamate ligase	Mb2179c, -, len: 486 aa. Equivalent to Rv2155c, len: 486 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 486 aa overlap). Probable murD, UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9). FASTA best: MURD_BACSU Q03522 (451 aa) opt: 534, E(): 2.7e-25; (28.8% identity in 483 aa overlap); contains PS01011 Folylpolyglutamate synthase signature 1 UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD	InterProMatches:IPR005762; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764), Biological Process: cell wall biosynthesis (sensu Bacteria) (GO:0009273) UDP-N-acetylmuramoylalanyl-D-glutamate ligase	
RICPR00395	CELL DIVISION PROTEIN FTSW	Putative uncharacterized protein	identified by similarity to SP:P16457; match to protein family HMM PF01098 cell division protein FtsW	identified by match to protein family HMM PF01098 cell division protein, FtsW/RodA/SpoVE family	Cell division protein	similar to BR1432, cell division protein FtsW FtsW, cell division protein	Cell division protein ftsW	conserved hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1087 putative cell division protein	conserved hypothetical protein	Similar to Q9KPG6 Cell division protein FtsW from Vibrio cholerae (398 aa). FASTA: opt: 1114 Z-score: 1237.3 E(): 5e-61 Smith-Waterman score: 1114; 44.892 identity in 372 aa overlap cell division protein FtsW	cell division protein	Cell division protein FtsW	Cell division protein FtsW	Cell cycle protein	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cell division protein FtsW or b0089 SWALL:FTSW_ECOLI (SWALL:P16457) (414 aa) fasta scores: E(): 2.5e-31, 32.62% id in 377 aa, and to Enterococcus hirae probable cell division protein FtsW SWALL:FTSW_ENTHR (SWALL:Q47866) (397 aa) fasta scores: E(): 2.8e-40, 36.34% id in 399 aa putative cell division protein	Cell division protein FtsW	Cell cycle protein	identified by similarity to EGAD:20048; match to protein family HMM PF01098 cell division protein,FtsW/RodA/SpoVE family	Cell cycle protein:Phosphopantetheine attachment site	Integral membrane protein. Inner membrane.  (predicted) Gene in the dcw cluster. Citation: Khattar et al. 1994. J. Bacteriol. 176: 7140-7147. cell division protein FtsW	cell cycle protein	cell division protein FtsW, putative identified by match to protein family HMM PF01098	cell division protein, FtsW/RodA/SpoVE family identified by match to protein family HMM PF01098	cell cycle protein	cell cycle protein	Cell cycle protein	Cell division protein ftsW	Cell division protein FtsW TIGRFAM: Cell division protein FtsW: (5.8e-141) PFAM: cell cycle protein: (7.6e-63) KEGG: sil:SPO1194 cell division protein FtsW, ev=0.0, 85% identity	
RICPR00396	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	Residues 1 to 355 of 355 are 99 pct identical to residues 1 to 355 of a 355 aa protein from Escherichia coli K12 ref: NP_414632.1 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapep tide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	conserved gene UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapep tide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	identified by match to protein family HMM PF03033; match to protein family HMM PF04101 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, putative	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	identified by similarity to SP:P37585; match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl-(Pentape p tide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase protein	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	Mb2177c, murG, len: 410 aa. Equivalent to Rv2153c, len: 410 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 410 aa overlap). Probable MURG PROTEIN (UPD-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase. FASTA score: MURG_BACSU P37585 murg protein (363 aa) opt: 494, E(): 1.1e-20; (27.9% identity in 365 aa overlap) UPD-N-acetylglucosamine-N-acetylmuramyl- (pentapep tide) pyrophosphoryl-undecaprenol-N-acetylglucosamine transferase MurG	InterProMatches:IPR006009; Biological Process: UDP-N-acetylgalactosamine biosynthesis (GO:0019277), Cellular Component: inner membrane (GO:0019866), Molecular Function: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity (GO:0050511) Glycosyl transferase Family 28	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol	MurG COG0707 UDP-N-acetylglucosamineLPS N-acetylglucosamine transferase p-N-acetylmuramoyl-pentapeptide-transferase	
RICPR00397	Uncharacterized lipoprotein RP413	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00398	CAPM PROTEIN	Glycosyl transferase	Similar to lipopolysaccharide 1	similar to glycosyltransferases hypothetical protein	conserved gene CapM protein, capsular polysaccharide biosynthesis	similar to glycosyltransferases hypothetical protein	Glycosyltransferase	lipopolysaccharide 1,6-galactosyltransferase	Putative uncharacterized protein	identified by match to protein family HMM PF00534 glycosyl transferase, group 1 family protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative glycosyltransferase	Similar to Edwardsiella ictaluri putative glycosyltransferase WbeIH SWALL:Q937X7 (EMBL:AY057452) (345 aa) fasta scores: E(): 3.3e-20, 30.33% id in 356 aa, and to Pyrococcus furiosus glycosyltransferase PF0307 SWALL:Q8U3Z3 (EMBL:AE010155) (336 aa) fasta scores: E(): 5e-11, 26.6% id in 342 aa putative LPS biosynthesis related glycosyltransferase	Predicted glycosyltransferases RfaG protein	Similar to Q8EMF7 Galacturonosyl transferase from Oceanobacillus iheyensis (362 aa). FASTA: opt: 908 Z-score: 1050.2 E(): 1.2e-50 Smith-Waterman score: 908; 40.223 identity in 358 aa overlap galacturonosyl transferase	putative glycosyl transferase, gene fragment	Lipopolysaccharide core biosynthesis glycosyl transferase LpsE	Glycosyltransferase	putative glycosyl transferase	Glycosyltransferase	Best Blastp Hit: gb|AAF42053.1| (AE002520) alpha-1,2-N-acetylglucosamine transferase [Neisseria meningitidis MC58] COG0438 Glycosyltransferases I; RfaK putative alpha-1,2-N-acetylglucosamine transferase	glycosyl transferase, group 1	glycosyltransferase	Glycosyl transferase, group 1	lipopolysaccharide core biosynthesis glycosyl transferase Also similar to BAV2233 (27.027 38d.)	putative lipopolysaccharide core biosynthesis glycosyl transferase protein	Glycosyl transferase, group 1	hypothetical protein	glycosyl transferase, group 1	conserved hypothetical protein	
RICPR00399	Diaminopimelate epimerase	Residues 1 to 275 of 275 are 99 pct identical to residues 1 to 275 of a 275 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290438.1 diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	conserved gene diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	identified by similarity to GP:6729756; match to protein family HMM PF01678; match to protein family HMM TIGR00652 diaminopimelate epimerase	Diaminopimelate epimerase protein	InterProMatches:IPR001653; Molecular Function: diaminopimelate epimerase activity (GO:0008837), Biological Process: lysine biosynthesis via diaminopimelate (GO:0009089) diaminopimelate epimerase	Diaminopimelate epimerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Diaminopimelate epimerase	diaminopimelate epimerase	IPR001653: Diaminopimelate epimerase diaminopimelate epimerase	Diaminopimelate epimerase	similar to Salmonella typhi CT18 diaminopimelate epimerase diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Diaminopimelate epimerase	Similar to sp|Q8YJF0|DAPF_BRUME sp|Q8UC03|DAPF_AGRT5 sp|Q9A280|DAPF_CAUCR sp|Q8YVD0|DAP2_ANASP; Ortholog to ERGA_CDS_00210 Diaminopimelate epimerase	
RICPR00400	Putative methylthiotransferase RP416	Putative uncharacterized protein	Putative 2-methylthioadenine synthetase	identified by similarity to OMNI:SA1633; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 conserved hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 MiaB-like tRNA modifying enzyme	Hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 MiaB-like tRNA modifying enzyme	Putative uncharacterized protein	conserved hypothetical protein	2-methylthioadenine synthetase	Putative uncharacterized protein TTHA1618	2-methylthioadenine synthetase	Similar to several including: Chlamydia pneumoniae hypothetical protein Cpn0477/cp0277/cpj0477 cpn0477 or cp0277 or cpj0477 SWALL:Y477_CHLPN (SWALL:Q9Z874) (421 aa) fasta scores: E(): 4.1e-119, 71.97% id in 421 aa, and to Thermoanaerobacter tengcongensis 2-methylthioadenine synthetase MiaB or tte0962 SWALL:Q8RB61 (EMBL:AE013061) (437 aa) fasta scores: E(): 5.5e-40, 34.82% id in 425 aa, and to Thermotoga maritima hypothetical protein Tm0830 SWALL:Y830_THEMA (SWALL:Q9WZT7) (434 aa) fasta scores: E(): 6.3e-40, 36.83% id in 429 aa conserved hypothetical protein	Putative uncharacterized protein	similar to BR1933, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	conserved hypothetical protein	Hypothetical UPF0004 protein JHP0270	Ortholog of S. aureus MRSA252 (BX571856) SAR1653 conserved hypothetical protein	conserved hypothetical protein	Similar to sp|Q9ZDB6|Y416_RICPR; Ortholog to ERGA_CDS_07860 Conserved hypothetical protein	Putative uncharacterized protein	COG0621 conserved hypothetical protein	Similar to Staphylococcus aureus hypothetical protein SAV1576 or SA1405 SWALL:Q99TS0 (EMBL:AP003362) (448 aa) fasta scores: E(): 4.3e-56, 38.33% id in 433 aa, and to Bacillus subtilis hypothetical protein YqeV or BSU25430 SWALL:YQEV_BACSU (SWALL:P54462) (451 aa) fasta scores: E(): 5.7e-55, 39.1% id in 422 aa conserved hypothetical protein	Putative oxidoreductase	conserved hypothetical protein	similar to unknown protein	Similar to sp|Q9ZDB6|Y416_RICPR; Ortholog to ERWE_CDS_07950 Conserved hypothetical protein	identified by match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 tRNA modification enzyme, MiaB family	
RICPR00401	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Residues 1 to 327 of 327 are 99 pct identical to residues 1 to 327 of a 327 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288148.1 phenylalanine tRNA synthetase, alpha-subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase, alpha subunit	conserved gene phenylalanyl tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha chain	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	phenylalanyl-tRNA synthetase alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	Phenylalanyl-tRNA synthetase alpha chain	identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468 phenylalanyl-tRNA synthetase, alpha subunit	Phenylalanyl-tRNA synthetase alpha chain	
RICPR00402	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Residues 1 to 795 of 795 are 99 pct identical to residues 1 to 795 of a 795 aa protein from Escherichia coli K12 ref: NP_416228.1 phenylalanine tRNA synthetase, beta-subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase, beta subunit	conserved gene phenylalanyl tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	phenylalanyl-tRNA synthetase	identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	phenylalanyl-tRNA synthetase beta subunit	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	Phenylalanyl-tRNA synthetase beta chain	identified by similarity to SP:P56145; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472 phenylalanyl-tRNA synthetase, beta subunit	Phenylalanyl-tRNA synthetase beta chain	
RICPR00403	DNA polymerase III subunit beta	DNA polymerase III, beta chain	DNA polymerase III beta subunit	Residues 1 to 316 of 316 are 99 pct identical to residues 51 to 366 of a 366 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290334.1 DNA polymerase III, beta-subunit	DNA polymerase III subunit beta	DNA polymerase III, beta subunit protein	DNA polymerase III, beta chain	DNA polymerase III subunit beta	DnaN protein	DNA polymerase III, beta chain	Probable dna polymerase III (Beta chain) protein	DNA polymerase III, beta chain	DNA polymerase III, beta chain	conserved gene DNA polymerase III beta chain	DNA polymerase III, beta chain	DNA-directed DNA polymerase III, beta chain	identified by similarity to EGAD:16050; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA pol III beta chain	DNA polymerase III beta subunit	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA-directed DNA polymerase, beta subunit	DNA polymerase III, beta chain	DNA polymerase III, beta chain	DNA POLYMERASE III, BETA CHAIN	DNA polymerase III beta subunit	identified by similarity to OMNI:NTL01CJ00004; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 DNA polymerase III, beta subunit	DNA polymerase III subunit beta	DNA polymerase III, beta subunit	DNA polymerase III subunit beta	
RICPR00404	Uncharacterized protein RP420	unknown	conserved hypothetical protein	Hypothetical protein precursor	Putative uncharacterized protein	conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	hypothetical cytosolic protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00405	Leucyl-tRNA synthetase	Residues 1 to 891 of 891 are 99 pct identical to residues 17 to 907 of a 907 aa protein from Escherichia coli gb: AAB40843.1 leucine tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	leucyl-tRNA synthetase	conserved gene leucyl tRNA synthetase	leucyl-tRNA synthetase	leucyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396 leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	identified by similarity to SP:P07813; match to protein family HMM PF00133; match to protein family HMM TIGR00396 leucyl-tRNA synthetase	Leucyl-tRNA synthetase protein	Leucyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark leucyl-tRNA synthetase	Leucyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002302: Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia leucine tRNA synthetase	Leucyl-tRNA synthetase	similar to Salmonella typhi CT18 leucyl-tRNA synthetase leucyl-tRNA synthetase	Leucyl-tRNA synthetase	similar to BR1807, leucyl-tRNA synthetase LeuS, leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	Leucyl-tRNA synthetase	
RICPR00406	Putative uncharacterized protein RP422	Ribonuclease D	probable ribonuclease D	identified by match to protein family HMM PF01612 exonuclease, putative	Ribonuclease D	RNAse D protein	Ribonuclease D	similar to BR0120, 3-5 exonuclease family protein 3-5 exonuclease family protein	Ribonuclease d	putative ribonuclease D	Similar to rp||RP422 rc||rnd2; Ortholog to ERGA_CDS_08220 Probable ribonuclease D	COG0349 Rnd ribonuclease D other copies include: AM151; go_component: 0005622 ribonuclease D	COG0349 ribonuclease D 3'-5' exonuclease	Ribonuclease D	ribonuclease D	Similar to rp||RP422 rc||rnd2; Ortholog to ERWE_CDS_08320 Probable ribonuclease D	Ribonuclease D	3'-5' exonuclease	3'-5' exonuclease	3'-5' exonuclease	3'-5' exonuclease	Ribonuclease D	3'-5' exonuclease	3'-5' exonuclease	3'-5' exonuclease family protein identified by match to protein family HMM PF01612	3'-5' exonuclease	3'-5' exonuclease family protein identified by match to protein family HMM PF01612	3'-5' exonuclease	3'-5' exonuclease family protein identified by match to protein family HMM PF01612	
RICPR00407	Uncharacterized protein RP423	similar to BR1130, conserved hypothetical protein conserved hypothetical protein	unknown	Septum formation initiator	Septum formation initiator	putative cell division protein similarity:fasta; with=UniProt:Q7CZA0_AGRT5 (EMBL:AE008068); Agrobacterium tumefaciens (strain C58/ATCC 33970).; AGR_C_2633p. AGR_C_2633p.; length=114; id 68.269; 104 aa overlap; query 1-104; subject 10-113	Septum formation initiator	putative septum formation initiator protein similar to AGR_C_2633p [Agrobacterium tumefaciens] Similar to swissprot:Q8UFG9 Putative location:bacterial inner membrane Psort-Score: 0.0446	Septum formation initiator	Septum formation initiator	Septum formation initiator family protein	Septum formation initiator PFAM: Septum formation initiator KEGG: mlo:mlr0382 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Septum formation initiator precursor	Putative uncharacterized protein	Septum formation initiator	Septum formation initiator precursor	Septum formation initiator	Putative uncharacterized protein	Septum formation initiator	Septum formation initiator GO_process: cell cycle [GO ID 0007049]	septum formation initiator	Putative uncharacterized protein	conserved hypothetical protein similar to septum formation initiators,InterPro; Septum formation initiator hypothetical protein	Septum formation initiator precursor	Septum formation initiator	Septum formation initiator precursor	Septum formation initiator	
RICPR00408	Phosphatidate cytidylyltransferase	Residues 1 to 247 of 247 are 95 pct identical to residues 52 to 298 of a 298 aa protein from Escherichia coli K12 ref: NP_415927.1 putative phosphatidate cytidiltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	identified by similarity to OMNI:VC2255; match to protein family HMM PF01148 phosphatidate cytidylyltransferase	InterProMatches:IPR000374; Molecular Function: phosphatidate cytidylyltransferase activity (GO:0004605), Biological Process: phospholipid biosynthesis (GO:0008654), Cellular Component: membrane (GO:0016020) phosphatidate cytidylyltransferase (CDP-diglyceride synthase)	phosphatidate cytidylyltransferase	CdsA COG0575 CDP-diglyceride synthetase phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	CDP-diglyceride synthetase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	identified by match to PFAM protein family HMM PF01148 phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Similar to sp|Q9ZDA8|CDSA_RICPR sp|O31752|CDSA_BACSU sp|Q59173|CDSA_BRUAB sp|P73548|CDSA_SYNY3 rc||cdsA sp|P76091|YNBB_ECOLI; Ortholog to ERGA_CDS_07520 Phosphatidate cytidylyltransferase	COG0575 CdsA CDP-diglyceride synthetase; go_component: 0016020 phosphatidate cytidylyltransferase	COG0575 CDP-diglyceride synthetase	Similar to Pseudomonas aeruginosa phosphatidate cytidylyltransferase CdsA or Cds or pa3651 SWALL:CDSA_PSEAE (SWALL:Q59640) (271 aa) fasta scores: E(): 3e-18, 34.04% id in 282 aa, and to Bacteroides thetaiotaomicron phosphatidate cytidylyltransferase BT4006 SWALL:Q8A0L5 (EMBL:AE016943) (280 aa) fasta scores: E(): 3.8e-92, 78.41% id in 278 aa, and to Porphyromonas gingivalis W83 phosphatidate cytidylyltransferase CdsA or PG0046 SWALL:AAQ65297 (EMBL:AE017172) (284 aa) fasta scores: E(): 1.8e-33, 38.84% id in 278 aa putative phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Similar to Streptomyces coelicolor putative integral membrane protein SCO5628 or SC6A9.39C SWALL:O86769 (EMBL:AL031035) (391 aa) fasta scores: E(): 1.7e-18, 35.44% id in 268 aa, and to Escherichia coli phosphatidate cytidylyltransferase CdsA or Cds or b0175 or z0186 or ecs0177 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 1.5e-15, 33.85% id in 192 aa putative integral membrane phospholipid biosynthetic nucleotidyltransferase	phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase	Similar to sp|Q9ZDA8|CDSA_RICPR sp|O31752|CDSA_BACSU sp|Q59173|CDSA_BRUAB sp|P73548|CDSA_SYNY3 rc||cdsA sp|P76091|YNBB_ECOLI; Ortholog to ERWE_CDS_07600 Phosphatidate cytidylyltransferase	identified by similarity to SP:O31752 phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148 phosphatidate cytidylyltransferase	phosphatidate cytidylyltransferase	Phosphatidate cytidylyl transferase	
RICPR00409	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Residues 1 to 253 of 253 are 99 pct identical to residues 1 to 253 of a 253 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285868.1 orf, conserved hypothetical protein	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	conserved gene undecaprenyl diphosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	Undecaprenyl pyrophosphate synthetase	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 undecaprenyl diphosphate synthase	Putative uncharacterized protein	Undecaprenyl diphosphate synthase	Undecaprenyl pyrophosphate synthetase	Mb2382c, -, len: 296 aa. Equivalent to Rv2361c, len: 296 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 296 aa overlap). Long (C50) chain Z-isoprenyl diphosphate synthase (EC 2.5.1.-) (see citation below), equivalent to UPPS_MYCLE|ML0634|B1937_F2_65|P38119 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE from Mycobacterium leprae (296 aa), FASTA scores: opt: 1789, E(): 1.8e-97, (86.5% identity in 296 aa overlap). Also highly similar to others e.g. UPPS|Q9L2H4 UNDECAPRENYL PYROPHOSPHATE SYNTHETASE from Streptomyces coelicolor (277 aa), FASTA scores: opt: 1098, E(): 8.2e-60, (63.5% identity in 247 aa overlap); Q55482|UPPS_SYNY3|SLL0506 from Synechocystis sp. strain PCC 6803 (249 aa), FASTA scores: opt: 686, E(): 4.2e-33, (46.4% identity in 235 aa overlap); O67291|UPPS_AQUAE|AQ_1248 from Aquifex aeolicus (231 aa), FASTA scores: opt: 684, E(): 5.2e-33, (46.3% identity in 229 aa overlap); etc. Also similar to Rv1086|MTV017.39 from Mycobacterium tuberculosis. Contains PS01066 Hypothetical YBR002c family signature. SEEMS TO BELONG TO THE UPP SYNTHETASE FAMILY. Note that previously known as uppS. LONG (C50) CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHASE (Z-DECAPRENYL DIPHOSPHATE SYNTHASE)	InterProMatches:IPR001441; Biological Process: metabolism (GO:0008152), Molecular Function: transferase activity (GO:0016740) undecaprenyl pyrophosphate synthetase	
RICPR00410	Sensor protein	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 sensor histidine kinase	sensor histidine kinase (homolog to spaK Bsu)	Sensor protein	InterProMatches:IPR009082; involved in global regulation of aerobic and anaerobic respiration two-component sensor histidine kinase	two-component sensor histidine kinase	similar to Salmonella typhi CT18 two-component sensor kinase EnvZ two-component sensor kinase EnvZ	Two-component system histidine kinase	similar to BR1522, osmolarity sensor protein EnvZ EnvZ	Sensor protein	two-component sensor histidine kinase	sensor histidine kinase (homolog to spaK Bsu)	Osmolarity sensor protein envZ	Osmolarity sensor protein envZ	identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF02518 sensor histidine kinase	osmolarity sensor protein envZ	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 sensor histidine kinase	Osmolarity sensor protein EnvZ	Signal transduction histidine kinase	sensor histidine kinase	ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein, C-term...	BLAST shows BaeS domain (COG0642: Signal transduction histidine kinase). This protein may be involved in the signal transduction mechanism. ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase. signal transduction kinase protein	periplasmic sensor signal transduction histidine kinase	periplasmic sensor signal transduction histidine kinase	Periplasmic Sensor Signal Transduction Histidine Kinase	histidine kinase	periplasmic sensor signal transduction histidine kinase	Sensor protein	Periplasmic Sensor Signal Transduction Histidine Kinase	
RICPR00411	PETR PROTEIN	PetR	Two-component response regulator	PetR protein	PetR	PetR	PetR protein	transcriptional regulatory protein	PetR protein	Response regulator protein OmpR	
RICPR00412	Probable branched-chain-amino-acid aminotransferase	Probable branched-chain amino acid aminotransferase protein	Similar to branched-chain amino acid aminotransferase	identified by similarity to SP:P00510; match to protein family HMM PF01063; match to protein family HMM TIGR01122 branched-chain amino acid aminotransferase	Branched-chain-amino-acid transaminase	Branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122 branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase	Branched-chain-amino-acid aminotransferase IlvE	putative Branched-chain amino acid aminotransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme branched-chain amino acid transferase	Branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase	branched-chain amino acid aminotransferase	identified by similarity to SP:P00510; match to protein family HMM PF01063; match to protein family HMM TIGR01122 branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase	branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase I	branched-chain amino acid aminotransferase identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122	branched-chain amino acid aminotransferase	branched-chain amino acid aminotransferase I	branched-chain amino acid aminotransferase identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122	branched-chain amino acid aminotransferase	branched-chain amino acid aminotransferase	IlvE branched-chain amino acid aminotransferase	Branched-chain amino acid aminotransferase	aminotransferase, class IV	branched-chain amino acid aminotransferase	Branched chain amino acid aminotransferase	
RICPR00413	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Residues 7 to 298 of 298 are 100 pct identical to residues 1 to 292 of a 292 aa protein from Escherichia coli K12 ref: NP_416973.1 dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	dihydrodipicolinate synthase	conserved gene dihydropicolinate synthase	dihydrodipicolinate synthase	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 dihydrodipicolinate synthase	dihydrodipicolinate synthase	identified by similarity to SP:P05640; match to protein family HMM PF00701; match to protein family HMM TIGR00674 dihydrodipicolinate synthase	Dihydrodipicolinate synthase	dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 dihydrodipicolinate synthase	Dihydrodipicolinate synthase	Dihydrodipicolinate synthase protein	Dihydrodipicolinate synthase	Mb2774c, dapA, len: 300 aa. Equivalent to Rv2753c, len: 300 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 300 aa overlap). Probable dapA, dihydrodipicolinate synthase (EC 4.2.1.52), equivalent to Q9CBW4|DAPA_MYCLE|ML1513 DIHYDRODIPICOLINATE SYNTHASE from Mycobacterium leprae (300 aa), FASTA scores: opt: 1699, E(): 2.2e-98, (86.65% identity in 300 aa overlap). Also highly similar to many e.g. P19808|DAPA_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (301 aa), FASTA scores: opt: 1089, E(): 2e-60, (58.7% identity in 288 aa overlap); O86841|DAPA_STRCO|SC9A10.08 from Streptomyces coelicolor (299 aa), FASTA scores: opt: 1044, E(): 1.3e-57, (55.75% identity in 287 aa overlap); P05640|DAPA_ECOLI (292 aa), FASTA scores: opt: 515, E(): 0, (33.8% identity in 287 aa overlap); etc. Contains PS00665 and PS00666 Dihydrodipicolinate synthetase signatures 1 and 2. BELONGS TO THE DHDPS FAMILY. PROBABLE DIHYDRODIPICOLINATE SYNTHASE DAPA (DHDPS) (DIHYDRODIPICOLINATE SYNTHETASE)	InterProMatches:IPR005263 dihydrodipicolinate synthase	Dihydrodipicolinate synthase	dihydrodipicolinate synthase	Dihydrodipicolinate synthase	IPR002220: Dihydrodipicolinate synthetase dihydrodipicolinate synthase	
RICPR00414	SsrA-binding protein	SSRA-binding protein	SsrA-binding protein	Residues 1 to 160 of 160 are 100 pct identical to residues 1 to 160 of a 160 aa protein from Escherichia coli O157:H7 ref: NP_311509.1 small protein B	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SmpB protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	similar to SsrA-binding protein hypothetical protein	conserved gene SsrA (tmRNA) binding protein	similar to SsrA-binding protein hypothetical protein	SsrA-binding protein	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein tmRNA binding protein SmpB	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	SsrA-binding protein	tmRNA-binding protein SsrA	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	SsrA-binding protein	identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 SsrA-binding protein	
RICPR00415	Outer membrane protein	Similar to outer membrane protein hypothetical protein	conserved gene 27 kDa outer membrane protein	Similar to outer membrane protein hypothetical protein	Outer membrane protein	IPR006663: Thioredoxin domain 2 putative thiol-disulfide isomerase	Protein-disulfide isomerase	similar to Salmonella typhi CT18 putative exported protein putative exported protein	similar to BR0909, outer membrane protein, hypothetical outer membrane protein, hypothetical	Similar to rc||RC0597 rp||RP431; Ortholog to ERGA_CDS_07300 Similar to thiol:disulfide interchange protein dsbA	conserved family - putative disulfide oxidoreductase hypothetical protein	COG1651 protein-disulfide isomerase	copper sensitivity protein ScsC	Protein-disulfide isomerase	Putative thiol-disulfide isomerase	Outer membrane protein	Similar to rc||RC0597 rp||RP431; Ortholog to ERWE_CDS_07380 Similar to thiol:disulfide interchange protein dsbA	Thiol:disulfide interchange protein DsbA	DSBA oxidoreductase	DSBA oxidoreductase	DSBA oxidoreductase	Citation: MEDLINE 21833510 (ortholog from B.  subtilis) COG1651, DsbG, Protein-disulfide isomerase ; PS50223: THIOREDOXIN_2. PFam01323: DSBA,DSBA-like thioredoxin domain. Putative protein-disulfide isomerase	DSBA oxidoreductase	DSBA thioredoxin domain protein identified by match to protein family HMM PF01323	DSBA oxidoreductase	disulfide oxidoreductase identified by similarity to GB:AAM22615.1; match to protein family HMM PF01323	DSBA oxidoreductase	DSBA thioredoxin domain protein identified by match to protein family HMM PF01323	suppressor for copper-sensitivity C	
RICPR00416	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Residues 1 to 289 of 289 are 99 pct identical to residues 1 to 289 of a 289 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286445.1 succinyl-CoA synthetase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	succinyl-CoA synthetase, alpha subunit	conserved gene succinyl CoA synthetase alpha chain	succinyl-CoA synthetase, alpha subunit	identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA synthetase alpha chain	identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019 succinyl-CoA synthase, alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Succinyl-CoA ligase [ADP-forming] subunit alpha	Mb0977, sucD, len: 303 aa. Equivalent to Rv0952, len: 303 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 303 aa overlap). Probable sucD, succinyl-CoA synthetase, alpha chain (EC 6.2.1.5), equivalent to AL035500|MLCL373_4|NP_301242.1|NC_002677 succinyl-CoA synthase [alpha] chain from Mycobacterium leprae (300 aa), FASTA score: (86.3% identity in 300 aa overlap). Also highly similar to others e.g.  CAB92672.1|AL356832 from Streptomyces coelicolor (294 aa); P53591|SUCD_COXBU from Escherichia coli (288 aa), FASTA scores: opt: 855, E(): 0, (53.8% identity in 286 aa overlap); etc. Contains PS00399 ATP-citrate lyase and succinyl-CoA ligases active site, and PS00017 ATP/GTP-binding site motif A (P-loop). PROBABLE SUCCINYL-COA SYNTHETASE (ALPHA CHAIN) SUCD (SCS-ALPHA)	InterProMatches:IPR005810; Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) succinyl-CoA synthetase (alpha subunit)	succinyl-CoA synthetase alpha subunit	Succinyl-CoA ligase [ADP-forming] subunit alpha	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinyl-CoA synthetase alpha subunit	IPR005810: Succinyl-CoA ligase, alpha subunit succinyl-CoA synthetase, alpha subunit	Succinyl-CoA synthetase, alpha subunit	similar to Salmonella typhi CT18 succinyl-CoA synthetase alpha chain succinyl-CoA synthetase alpha chain	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 succinyl-CoA synthetase alpha chain SucD or B0729 or C0806 or Z0883 or ECS0754 SWALL:SUCD_ECOLI (SWALL:P07459) (288 aa) fasta scores: E(): 2.8e-63, 60.35% id in 285 aa, and to Coxiella burnetii succinyl-CoA synthetase alpha chain SucD or CBU1396 SWALL:SUCD_COXBU (SWALL:P53591) (294 aa) fasta scores: E(): 2.4e-65, 63.34% id in 281 aa succinyl-CoA synthetase alpha chain	
RICPR00417	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	Residues 1 to 388 of 388 are 100 pct identical to residues 1 to 388 of a 388 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286444.1 succinyl-CoA synthetase, beta subunit	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	SucC protein	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	succinyl-CoA synthetase, beta subunit	conserved gene succinyl CoA synthetase beta chain	succinyl-CoA synthetase, beta subunit	identified by similarity to EGAD:108441; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 succinyl-CoA synthase, beta subunit	identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 succinyl-CoA synthase, beta subunit	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA ligase [ADP-forming] subunit beta	Succinyl-CoA synthetase beta chain	identified by similarity to SP:Q9KA20; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016 succinyl-CoA synthase, beta subunit	SucC	Succinyl-CoA synthetase beta subunit protein	Succinyl-CoA ligase [ADP-forming] subunit beta	Mb0976, sucC, len: 387 aa. Equivalent to Rv0951, len: 387 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 387 aa overlap). Probable sucC, succinyl-Coa synthetase, beta chain (EC 6.2.1.5), equivalent to AL035500|MLCL373_3|NP_301241.1|NC_002677 succinyl-CoA synthase [beta] chain from Mycobacterium leprae (393 aa), FASTA score: (86.7% identity in 391 aa overlap). Also highly similar to others e.g.  AB92671.1|AL356832 succinyl-CoA synthetase beta chain from Streptomyces coelicolor (394 aa); P25126|SUCC_THEFL SUCCINYL-COA SYNTHETASE BETA CHAIN from Thermus aquaticus (378 aa); P07460|SUCC_ECOLI succinyl-CoA synthetase beta chain from Escherichia coli (388 aa), FASTA scores: opt: 933, E(): 0, (41.0% identity in 390 aa overlap); etc. PROBABLE SUCCINYL-COA SYNTHETASE (BETA CHAIN) SUCC (SCS-BETA)	InterProMatches:IPR005809; Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolism (GO:0008152) succinyl-CoA synthetase (beta subunit)	succinyl-CoA synthetase beta subunit	Succinyl-CoA synthetase beta chain	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinyl-CoA synthetase beta subunit	Succinyl-CoA synthetase beta chain	IPR005809: Succinyl-CoA synthetase, beta subunit succinyl-CoA synthetase, beta subunit	Succinyl-CoA synthetase, beta subunit	
RICPR00418	Uncharacterized protein RP434	unknown	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Tim44-like domain protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00419	Ribosome-binding factor A	identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082 ribosome-binding factor A	Ribosome-binding factor A	similar to BR2166, ribosome-binding factor A RbfA, ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A	ribosome-binding factor A	Ribosome-binding factor A	putative ribosome-binding factor protein similarity:fasta; with=UniProt:RBFA_ECOLI (EMBL:HS134244); Shigella flexneri.; rbfA; Ribosome-binding factor A (P15B protein).; length=132; id 33.929; 112 aa overlap; query 12-120; subject 6-114 similarity:fasta; with=UniProt:RBFA_RHIME (EMBL:SME591783); Rhizobium meliloti (Sinorhizobium meliloti).; rbfA; Ribosome-binding factor A.; length=135; id 84.328; 134 aa overlap; query 1-134; subject 1-134	Ribosome-binding factor A	ribosome-binding factor A PFAM: ribosome-binding factor A: (2.8e-13) KEGG: sil:SPO3835 ribosome-binding factor A, ev=5e-63, 87% identity	ribosome-binding factor A	ribosome binding factor A, rRNA processing protein similar to rbfA (SMc00320) [Sinorhizobium meliloti] and AGR_C_129p [Agrobacterium tumefaciens] Similar to entrez-protein:Q92SW3 Putative location:bacterial cytoplasm Psort-Score: 0.2805; go_process: rRNA processing [goid 0006364]	ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A identified by match to protein family HMM PF02033	ribosome-binding factor A	Ribosome-binding factor A	ribosome-binding factor A PFAM: ribosome-binding factor A KEGG: sil:SPO3835 ribosome-binding factor A	ribosome-binding factor A	ribosome-binding factor A PFAM: ribosome-binding factor A KEGG: nha:Nham_0032 ribosome-binding factor A	Ribosome-binding factor A	
RICPR00420	Uncharacterized protein RP436	Similar to sp|O05963|Y436_RICPR rc||RC0607; Ortholog to ERGA_CDS_01690 Conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	DedA family, yqaA putative transmembrane protein	Similar to sp|O05963|Y436_RICPR rc||RC0607; Ortholog to ERWE_CDS_01740 Conserved hypothetical protein	Predicted membrane protein	conserved hypothetical protein	Putative membrane protein	conserved hypothetical protein identified by similarity to GB:AAS13900.1	Hypotheticaal protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Predicted membrane protein	hypothetical protein	Predicted membrane protein	Predicted membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00421	Uncharacterized protein RP437	RDD family protein	Putative uncharacterized protein	Putative uncharacterized protein	RDD family protein	RDD family protein	Putative uncharacterized protein	hypothetical membrane spanning protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00422	Recombination protein recR	Recombination protein recR	Recombination protein recR	Residues 1 to 201 of 201 are 100 pct identical to residues 1 to 201 of a 201 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286213.1 recombination and repair	Recombination protein recR	Recombination protein recR	Recombination protein recR	RecR	recombination protein recR	Recombination protein recR	Recombination protein recR	Recombination and repair protein recR	conserved gene recombinational DNA repair protein RecR	Recombination and repair protein recR	Recombination protein recR	identified by similarity to EGAD:19739; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	Recombination protein RecR	recombination protein RecR	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	recombination protein	Recombination protein recR	Recombination protein recR	Recombinational DNA repair protein	identified by similarity to SP:P24277; match to protein family HMM PF02132; match to protein family HMM TIGR00615 recombination protein RecR	Recombination protein recR	DNA recombination protein	Recombination protein recR	
RICPR00423	Uncharacterized protein RP439	
RICPR00424	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	identified by similarity to OMNI:SA1011; match to protein family HMM PF01513 conserved hypothetical protein	ATP-NAD kinase	identified by match to protein family HMM PF01513 ATP-NAD kinase, putative	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Putative uncharacterized protein	NAD(+) kinase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	COG0061 Predicted sugar kinase putative inorganic polyphosphate-ATP-NAD kinase	ATP-NAD kinase	similar to BR0937, conserved hypothetical protein conserved hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	Probable inorganic polyphosphate/ATP-NAD kinase	Putative uncharacterized protein	identified by Glimmer2; putative; The product of this gene was detected by Western blot analysis. For details on the method see Tettelin et al. 2002. conserved hypothetical protein	Hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	best blastp match gb|AAK34001.1| (AE006555) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Similar to sp|Q92I08|PPNK_RICCN sp|Q9ZDA2|PPNK_RICPR; Ortholog to ERGA_CDS_07800 Probable inorganic polyphosphate/ATP-NAD kinase	conserved family - putative kinase hypothetical protein	Conserved hypothetical protein	COG0061 predicted sugar kinase	conserved hypothetical protein	Probable inorganic polyphosphate/ATP-NAD kinase	probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)	hypothetical protein, similar to inorganic polyphosphate/ATP-NAD kinase	Similar to sp|Q92I08|PPNK_RICCN sp|Q9ZDA2|PPNK_RICPR; Ortholog to ERWE_CDS_07890 Probable inorganic polyphosphate/ATP-NAD kinase	
RICPR00425	Putative uncharacterized protein RP441	hypothetical protein	hydrolase, metallo-beta-lactamase superfamily	Ribonuclease J 1	Predicted hydrolase	Metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753; match to protein family HMM PF02147; match to protein family HMM TIGR00649 metallo-beta-lactamase family protein	Conserved hypothetical	Zn-dependent hydrolase	probable hydrolase	identified by match to protein family HMM PF00753; match to protein family HMM PF07521 metallo-beta-lactamase family protein	metallo-beta-lactamase superfamily protein	Hypothetical protein SE0787	Putative uncharacterized protein	Metallo-beta-lactamase superfamily hydrolase	identified by similarity to GP:28203198; match to protein family HMM PF00753; match to protein family HMM TIGR00649 metallo-beta-lactamase family protein	Putative uncharacterized protein	Metallo-beta-lactamase family protein	Metallo-beta-lactamase superfamily protein	Mb2773c, -, len: 558 aa. Equivalent to Rv2752c, len: 558 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 558 aa overlap). Conserved hypothetical protein, equivalent to Q9CBW5|ML1512 HYPOTHETICAL PROTEIN from Mycobacterium leprae (558 aa), FASTA scores: opt: 3301, E(): 1.2e-195, (89.05% identity in 558 aa overlap). Also highly similar to other hypothetical proteins from a wide range of prokaryotes e.g. CAC19480|P54122|YOR4_CORGL from Corynebacterium glutamicum (Brevibacterium flavum) (718 aa), FASTA scores: opt: 2142, E(): 3.5e-124, (57.2% identity in 554 aa overlap) (N-terminus longer); O86842|SC9A10.09 from Streptomyces coelicolor (561 aa), FASTA scores: opt: 2077, E(): 2.9e-120, (55.95% identity in 556 aa overlap); Q9ZI80 from Streptomyces toyocaensis (528 aa), FASTA scores: opt: 1843, E(): 7.3e-106, (52.45% identity in 528 aa overlap) (N-terminus shorter 30 aa); etc. CONSERVED HYPOTHETICAL PROTEIN	Conserved hypothetical protein hydrolase	metallo-b-lactamase superfamily protein	Metallo-beta-lactamase superfamily protein	Putative uncharacterized protein yciH	Predicted hydrolase of the metallo-beta-lactamase superfamily	Putative uncharacterized protein	similar to BR0817, metallo-beta-lactamase family protein metallo-beta-lactamase family protein	Putative uncharacterized protein gbs1804	Putative uncharacterized protein	
RICPR00426	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Residues 1 to 339 of 339 are 100 pct identical to residues 1 to 339 of a 339 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290191.1 glycerol-3-phosphate dehydrogenase (NAD+)	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	GpsA	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	similar to glycerol-3-phosphate dehydrogenase (NAD+) hypothetical protein	conserved gene glycerol-3-phosphate dehydrogenase [NAD(P)+]	similar to glycerol-3-phosphate dehydrogenase (NAD+) hypothetical protein	Glycerol-3-phosphate dehydrogenase	identified by similarity to EGAD:8708; match to protein family HMM PF01210 glycerol-3-phosphate dehydrogenase, [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	glycerol-3-phosphate dehydrogenase [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	Glycerol-3-phosphate dehydrogenase	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	identified by similarity to SP:P46919; match to protein family HMM PF01210 glycerol-3-phosphate dehydrogenase, NAD(P)-dependent	Probable glycerol-3-phosphate dehydrogenase 2	Mb0579c, gpdA1, len: 341 aa. Equivalent to Rv0564c, len: 341 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 341 aa overlap). Possible gpdA1(alternate gene names: gpsA, glyC), glycerol-3-phosphate dehydrogenase [NAD(P)+] dependant (EC 1.1.1.94), similar to many other glycerol-3-phosphate dehydrogenases e.g. P46919|GPDA_BACSU from Bacillus subtilis (345 aa), FASTA scores: opt: 731, E(): 0, (37.3% identity in 332 aa overlap); etc. Also similar to Rv2982c|gpdA2|MTCY349.05|Z83018|MTCY349_5 from Mycobacterium tuberculosis (334 aa), FASTA scores: opt: 740, E(): 0, (40.4% identity in 322 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE NAD-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE FAMILY. PROBABLE GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(P)+] GPDA1 (NAD(P)H-DEPENDENT GLYCEROL-3-PHOSPHATE DEHYDROGENASE) (NAD(P)H-DEPENDENT DIHYDROXYACETONE-PHOSPHATE REDUCTASE)	InterProMatches:IPR006168; synthesis of the sn-glycerol 3-phosphate,Molecular Function: glycerol-3-phosphate dehydrogenase (NAD+) activity (GO:0004367), Biological Process: glycerol-3-phosphate metabolism (GO:0006072), Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331) NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	glycerol-3-phosphate dehydrogenase [NAD(P)+]	Glycerol-3-phosphate dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycerol-3-phosphate dehydrogenase	
RICPR00427	Putative uncharacterized protein RP443	Putative uncharacterized protein	Predicted permease	Similar to rp||RP443 rc||RC0616; Ortholog to ERGA_CDS_07890 Conserved hypothetical protein	conserved hypothetical protein similar to NP_220824.1 hypothetical protein	identified by match to protein family HMM PF03547 auxin efflux carrier family protein	Similar to rp||RP443 rc||RC0616; Ortholog to ERWE_CDS_07980 Conserved hypothetical protein	Predicted permease	Code: R; COG: COG0679 putative receptor protein	Auxin Efflux Carrier	Code: R; COG: COG0679 putative receptor protein	putative transporter identified by match to protein family HMM PF03547	Auxin Efflux Carrier	Auxin Efflux Carrier	Putative permease	Code: R; COG: COG0679 putative receptor protein	auxin efflux carrier family protein identified by match to protein family HMM PF03547	Putative uncharacterized protein	putative transporter identified by similarity to GB:AAS13992.1; match to protein family HMM PF03547	Auxin efflux transporter type protein	Predicted permease	Auxin Efflux Carrier PFAM: Auxin Efflux Carrier KEGG: mag:amb2287 predicted permease	auxin efflux carrier family protein, putative	putative receptor protein Code: R; COG: COG0679	Auxin Efflux Carrier PFAM: Auxin Efflux Carrier KEGG: cps:CPS_0767 auxin efflux carrier family protein	putative transporter protein	Auxin Efflux Carrier	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00428	Putative uncharacterized protein RP444	Putative hydrolase protein	similar to hypothetical protein hypothetical protein	conserved gene hydrolase	similar to hypothetical protein hypothetical protein	identified by match to protein family HMM PF00561 hydrolase, alpha/beta fold family	Hydrolase protein	Similar to rc||RC0617; Ortholog to ERGA_CDS_07820 Conserved hypothetical protein	conserved family - putative hydrolase hypothetical protein	putative Esterase/lipase/thioesterase family protein	Similar to rc||RC0617; Ortholog to ERWE_CDS_07910 Conserved hypothetical protein	Alpha/beta hydrolase fold	Alpha/beta hydrolase fold	Predicted hydrolases or acyltransferases	Alpha/beta hydrolase	Citation: Fischer F et al, J Bacteriol. 1999 Sep;181(18):5725-33. PMID: 10482514 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily predicted hydrolases or acyltransferases	Alpha/beta hydrolase	alpha/beta hydrolase	hydrolase, alpha/beta fold family identified by match to protein family HMM PF00561	Alpha/beta hydrolase fold	putative D-(-)-3-hydroxybutyrate oligomer hydrolase	alpha/beta hydrolase	Alpha/beta hydrolase	Putative hydrolase/acyltransferase	putative hydrolase similarity:fasta; with=UniProt:Q985C1_RHILO (EMBL:BA000012); Rhizobium loti (Mesorhizobium loti).; Mll7742 protein.; length=299; id 49.658; 292 aa overlap; query 1-292; subject 1-289	Alpha/beta hydrolase fold	Alpha/beta hydrolase fold	alpha/beta hydrolase fold PFAM: alpha/beta hydrolase fold: (3.6e-13) KEGG: sil:SPOA0436 hydrolase, alpha/beta fold family, ev=4e-70, 50% identity	hydrolase, alpha/beta fold family identified by match to protein family HMM PF00561	
RICPR00429	Thioredoxin reductase	Thioredoxin reductase	Residues 33 to 353 of 353 are 99 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286765.1 thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	conserved gene thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292 thioredoxin-disulfide reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Mb3944, trxB2, len: 335 aa. Equivalent to Rv3913, len: 335 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 335 aa overlap). Probable trxB2, thioredoxin reductase (EC 1.6.4.5) (see citation below), equivalent to O30973|TRXB_MYCSM THIOREDOXIN REDUCTASE from Mycobacterium smegmatis (311 aa), FASTA scores: opt: 1575, E(): 1.8e-87, (78.35% identity in 305 aa overlap); and highly similar, but shorter at C-terminus, to P46843|TRXB_MYCLE|TRXB/A|TRX|ML2703 BIFUNCTIONAL THIOREDOXIN REDUCTASE/THIOREDOXIN from Mycobacterium leprae (458 aa), FASTA scores: opt: 1766, E(): 8.7e-99, (83.25% identity in 328 aa overlap). Also highly similar to many e.g. P52215|TRXB_STRCO|SCH24.12 from Streptomyces coelicolor (321 aa), FASTA scores: opt: 1249, E(): 7.2e-68, (60.4% identity in 313 aa overlap); Q9Z8M4|TRXB_CHLPN from Chlamydia pneumoniae (Chlamydophila pneumoniae) (311 aa), FASTA scores: opt: 978, E(): 1.3e-51, (49.85% identity in 307 aa overlap); P09625|TRXB_ECOLI|B0888 from Escherichia coli strain K12 (320 aa), FASTA scores: opt: 948, E(): 8.6e-50, (49.2% identity in 309 aa overlap); etc. Contains PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. BELONGS TO THE PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASES CLASS-II. COFACTOR: FAD (BY SIMILARITY). PROBABLE THIOREDOXIN REDUCTASE TRXB2 (TRXR) (TR)	Thioredoxin reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark thioredoxin reductase	Thioredoxin reductase	IPR000103: Pyridine nucleotide-disulphide oxidoreductase, class-II; IPR000759: Adrenodoxin reductase; IPR001100: Pyridine nucleotide-disulphide oxidoreductase, class I;IPR001327: FAD-dependent pyridine nucleotide-disulphide oxidoreductase;IPR008255: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site thioredoxin reductase	Thioredoxin reductase	
RICPR00430	GLYCOSYL TRANSFERASE	Glycosyl transferase, family 2	Similar to putative glycosyltransferase	Glycosyltransferase	polysaccharide biosynthesis protein/putative rhamnosyl transferase	PGL/p-HBAD biosynthesis glycosyltransferase Rv2957/MT3031	Mb2981, -, len: 275 aa. Equivalent to Rv2957, len: 275 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 275 aa overlap). Possible glycosyl transferase (EC 2.4.1.-); possibly secreted protein.  Highly similar to O88109|GSD|GTFD GSD PROTEIN from Mycobacterium avium subsp. silvaticum, Mycobacterium paratuberculosis, and Mycobacterium avium (266 aa), FASTA scores: opt: 1010, E(): 2.5e-62, (68.8% identity in 221 aa overlap). Also some similarity with other proteins and especially glycosyl transferases e.g. Q9AEE4 HYPOTHETICAL 31.4 KDA PROTEIN from Leptospira interrogans (265 aa), FASTA scores: opt: 371, E(): 3.3e-18, (34.43% identity in 212 aa overlap); Q9EXY4 PUTATIVE GLYCOSYL TRANSFERASE from Escherichia coli (248 aa), FASTA scores: opt: 339, E(): 5e-16, (32.4% identity in 210 aa overlap); Q9RCC4 GLYCOSYLTRANSFERASE-LIKE PROTEIN from Yersinia pestis (247 aa), FASTA scores: opt: 333, E(): 1.3e-15, (31.8% identity in 217 aa overlap); Q9EXY1 PUTATIVE GLYCOSYL TRANSFERASE from Escherichia coli (248 aa), FASTA scores: opt: 328, E(): 2.9e-15, (31.9% identity in 210 aa overlap); etc.  Equivalent to AAK47357 from Mycobacterium tuberculosis strain CDC1551 (256 aa) but longer 19 aa. POSSIBLE GLYCOSYL TRANSFERASE	putative exopolysaccharide biosynthesis protein, Glycosyl Transferase Family 2,YveO	Cell wall biogenesis glycosyltransferase	Rhamnosyltransferase	Putative uncharacterized protein	Glycosyl transferase	Lacto-N-neotetraose biosynthesis glycosyl tranferase	polysaccharide biosynthesis protein/putative rhamnosyl transferase	Glycosyl transferase, family 2	identified by match to protein family HMM PF00535 glycosyl transferase, group 2 family protein	Glycosyl transferase, family 2	Glycosyl transferase, family 2	Glycosyltransferase	Best Blastp Hit: gb|AAA68012.1| (U14554) glycosyl transferase [Neisseria gonorrhoeae] COG0463 Glycosyltransferases involved in cell wall; LgtD glycosyl transferase	Code: M; COG: COG0463 putative beta1,3-glucosyltransferase	Putative teichoic acid/polysaccharide glycosyl transferase, family 2	glucosyltransferase protein	glycosyl transferase, family 2	glycosyl transferase	Glycosyl transferase	glycosyl transferase, family 2	Putative beta1,3-glucosyltransferase WaaV	Glycosyl transferase, family 2	
RICPR00431	Probable DNA helicase II homolog	DNA helicase II	ATP-dependent DNA helicase	Residues 19 to 738 of 738 are 99 pct identical to residues 1 to 720 of a 720 aa protein from Escherichia coli K12 ref: NP_418258.1 DNA-dependent ATPase I and helicase II	DNA helicase II	UvrD/REP helicase	ATP-dependent DNA helicase pcrA	UvrD protein	Probable dna helicase II protein	DNA helicase II	DNA helicase II	conserved gene DNA dependent ATPase I and helicase II	DNA helicase II	ATP-dependent DNA helicase PcrA	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 ATP-dependent DNA helicase PcrA	DNA helicase II	ATP-dependent helicase PcrA	identified by match to protein family HMM PF00580 DNA helicase II, putative	DNA helicase II	DNA helicase II	ATP-dependent DNA helicase pcrA	Superfamily I DNA/RNA helicase	identified by similarity to SP:Q53727; match to protein family HMM PF00580 ATP-dependent DNA helicase, UvrD/REP family	UvrD	DNA helicase II protein	ATP-dependent DNA helicase pcrA	Mb0974, uvrD1, len: 771 aa. Equivalent to Rv0949, len: 771 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 771 aa overlap). Probable uvrD1, ATP dependent DNA helicase (EC 3.6.1.-), equivalent to P_301239.1|NC_002677 putative ATP-dependent DNA helicase from Mycobacterium leprae (778 aa). Also highly similar to others e.g. CAB92660.1|AL356832 from Streptomyces coelicolor (831 aa) (N-terminus longer); P56255|PCRA_BACST from Bacillus stearothermophilus (724 aa); Q10213|YAY5_SCHPO from Schizosaccharomyces pombe (Fission yeast) (887 aa), FASTA scores: opt: 927, E(): 0, (33.5% identity in 659 aa overlap); etc. Also similar to several other UvrD-like proteins in Mycobacterium tuberculosis e.g. Rv3201c, Rv3198c, Rv3202c. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE UVRD SUBFAMILY OF HELICASES. Note that previously known as uvrD. PROBABLE ATP DEPENDENT DNA HELICASE UVRD1	InterProMatches:IPR005751; plasmid rolling-circle replication,Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA unwinding (GO:0006268) ATP-dependent DNA helicase	ATP-dependent DNA helicase, UvrD/REP family	
RICPR00432	Uncharacterized protein RP448	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00433	THREONINE DEHYDRATASE	Probable amino-acid dehydratase protein	Similar to putative serine-threonine dehydratase	Putative threonine dehydratase	Pyridoxal-phosphate dependent enzyme	LmjF06.0730, predicted protein, len = 339 aa, possibly threonine dehydratase; predicted pI = 8.2554; contains a pyridoxal-phosphate dependent enzyme domain (pfam:PF00291;5.2e-26;codon 14-323); reasonable similarity to Q98DQ4, putative threonine dehydratase in Rhizobium loti threonine dehydratase-like protein	Threonine dehydratase family protein	identified by similarity to SP:P05792; match to protein family HMM PF00291 putative threonine dehydratase, catabolic	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	Threonine dehydratase	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	threonine dehydratase catabolic	threonine dehydratase identified by match to protein family HMM PF00291	transcript_id=ENSOCUT00000001979	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	transcript_id=ENSDNOT00000004709	Threonine dehydratase	Threonine dehydratase COG1171	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	serine/threonine dehydratase family protein identified by match to protein family HMM PF00291	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	Pyridoxal-phosphate dependent enzyme	threonine dehydratase, catabolic identified by similarity to SP:P05792; match to protein family HMM PF00291; match to protein family HMM PF01842; match to protein family HMM TIGR01127	Threonine dehydratase	threonine dehydratase, catabolic identified by similarity to SP:P05792; match to protein family HMM PF00291; match to protein family HMM TIGR01127	Pyridoxal-5'-phosphate-dependent enzyme, beta subunit	
RICPR00434	ATP-dependent protease La	Residues 1 to 799 of 799 are 99 pct identical to residues 1 to 799 of a 799 aa protein from Escherichia coli gb: AAB40195.1 ATP-dependent protease LA	ATP-dependent protease La	Lon; ATP-dependent protease la protein	ATP-dependent protease La	ATP-dependent protease	ATP-dependent protease La	ATP-dependent protease La	similar to ATP-dependent protease La hypothetical protein	conserved gene ATP-dependent protease La	similar to ATP-dependent protease La hypothetical protein	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	Endopeptidase La	ATP-dependent protease La	InterProMatches:IPR004815; Molecular Function: ATP-dependent peptidase activity (GO:0004176), Molecular Function: ATP binding (GO:0005524), Biological Process: ATP-dependent proteolysis (GO:0006510) class III heat-shock ATP-dependent Lon protease	ATP-dependent Lon protease	ATP-dependent protease La	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent serine proteinase La	ATP-dependent protease La	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR001984: Peptidase family S16; IPR008268: Peptidase S16, active site DNA-binding, ATP-dependent protease la; cleaves RcsA and SulA, heat shock k-protein (DNA binding activity)	ATP-dependent Lon protease	similar to Salmonella typhi CT18 Lon protease Lon protease	similar to BR1106, ATP-dependent protease La Lon, ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	ATP-dependent protease La	Putative ATP-dependent protease	

RICPR00435	CELL SURFACE ANTIGEN	Surface protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark YapH protein	C-terminal region of AIDA-like protein	Filamentous haemagglutinin, N-terminal:Adhesin HecA 20-residue repeat x2	319 kDa Cell surface antigen Sca3	Outer membrane autotransporter barrel domain	YadA-like protein	member of asn/thr-rich large protein family	Glycosyl hydrolase, BNR repeat	possible adhesin/hemolysin identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901	Putative autotransporter/adhesin	YapH protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Adhesin HecA 20-residue repeat x2	Haemagluttinin domain protein PFAM: Haemagluttinin domain protein; Hep_Hag repeat-containing protein KEGG: bur:Bcep18194_B0441 outer membrane protein, haemagluttinin-like	outer membrane autotransporter barrel domain TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel	Filamentous haemagglutinin , Adhesin	filamentous haemagglutinin identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901	Putative adhesin	conserved hypothetical protein Evidence 4 : Homologs of previously reported genes of unknown function	Hypothetical protein	Hypothetical protein SynWH7803_2393	Putative cell surface protein	Hemagglutinin-related protein	190-kDa cell surface antigen	Outer memberane protein rOmpA	Hemolysin-type calcium-binding protein	Cell surface protein	
RICPR00436	Isopentenyl-diphosphate delta-isomerase	isopentenyl-diphosphate delta-isomerase	Isopentenyl-diphosphate delta-isomerase	Similar to isopentenyl-diphosphate delta-isomerase hypothetical protein	conserved gene isopentenyl-diphosphate delta-isomerase	Similar to isopentenyl-diphosphate delta-isomerase hypothetical protein	Isopentenyl-diphosphate delta-isomerase	identified by similarity to SP:P58052 isopentenyl-diphosphate delta-isomerase	Isopentenyl-diphosphate delta-isomerase	isopentenyl-dephosphate delta-isomerase	isopentenyl diphosphate isomerase	Isopentenyl-diphosphate delta-isomerase	Putative uncharacterized protein	isopentenyl-diphosphate delta-isomerase FMN/related compound-binding protein	putative carotenoid biosynthesis protein isopentenyl diphosphate isomerase	Isopentenyl-diphosphate delta-isomerase	Isopentenyl-diphosphate delta-isomerase	Putative uncharacterized protein gbs1393	isopentenyl diphosphate isomerase	isopentenyl-diphosphate delta-isomerase	Ortholog of S. aureus MRSA252 (BX571856) SAR2431 isopentenyl-diphosphate delta-isomerase	Isopentenyl-diphosphate delta-isomerase	isopentenyl diphosphate isomerase	Isopentenyl-diphosphate delta-isomerase	best blastp match gb|AAK33799.1| (AE006537) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	may be N-terminal truncated isopentenyl-diphosphate delta-isomerase	identified by similarity to SP:P58052 isopentenyl-diphosphate delta-isomerase	Putative Isopentenyl diphosphate isomerase	isomerase, putative	
RICPR00437	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE	UDP-N-acetylglucosamine pyrophosphorylase	Glucosamine-1-phosphate acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase bifunctional	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine diphosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine diphosphorylase cytoplasmic protein	UDP-N-acetylglucosamine diphosphorylase PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase KEGG: cte:CT0251 UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine diphosphorylase (N-acetyl glucosamine-1-phosphate uridyltransferase)	UDP-N-acetylglucosamine diphosphorylase cytoplasmic protein	Nucleotidyl transferase PFAM: Nucleotidyl transferase KEGG: rsp:RSP_2503 glucosamine-1-phosphate N-acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	Nucleotidyl transferase	UDP-N-acetylglucosamine pyrophosphorylase	UDP-N-acetylglucosamine pyrophosphorylase	Nucleotidyl transferase PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase KEGG: rrs:RoseRS_4393 nucleotidyl transferase	UDP-N-acetylglucosamine diphosphorylase	Bifunctional GlmU protein: UDP-N- acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1- phosphate uridyltransferase)/Glucosamine-1-phosphate N- acetyltransferase	UDP-N-acetylglucosamine pyrophosphorylase PFAM: Nucleotidyl transferase KEGG: plt:Plut_1770 UDP-N-acetylglucosamine diphosphorylase	Nucleotidyl transferase	Nucleotidyl transferase	Nucleotidyl transferase	Nucleotidyl transferase	Nucleotidyl transferase	Nucleotidyl transferase	
RICPR00438	UPF0082 protein RP455	UPF0082 protein LIC_12886	similar to Escherichia coli K12 orf, conserved hypothetical protein gi: 1788171 (247 aa). BLAST with identity of 97% in 247 aa. This CDS ontains frameshift.  The sequence has been checked and is believed to be correct. pseudo	UPF0082 protein CT_457	UPF0082 protein YPO2055/y2255/YP_1898	UPF0082 protein NE0210	UPF0082 protein MYCGA1330	conserved hypothetical protein	UPF0082 protein RSc2190	UPF0082 protein plu2109	Similar to conserved hypothetical protein hypothetical protein	conserved gene YebC	Similar to conserved hypothetical protein hypothetical protein	UPF0082 protein lp_2253	UPF0082 protein UU295	hypothetical protein	identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033 conserved hypothetical protein TIGR01033	UPF0082 protein CV_3123	UPF0082 protein XF_1906	UPF0082 protein MAP_1030	Putative uncharacterized protein	UPF0082 protein Rv2603c/MT2678	Mb2635c, -, len: 251 aa. Equivalent to Rv2603c, len: 251 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 251 aa overlap). Highly conserved hypothetical protein, equivalent to Q49645|YQ03_MYCLE|ML0475|U1177B|B1177_C2_181 HYPOTHETICAL 26.6 KDA PROTEIN from Mycobacterium leprae (251 aa), FASTA scores: opt: 1514, E(): 2.2e-84, (92.45% identity in 251 aa overlap). Also highly similar to Q9L288|SCL2.11c HYPOTHETICAL 26.8 KDA PROTEIN from Streptomyces coelicolor (250 aa), FASTA scores: opt: 1268, E(): 1.5e-69, (76.7% identity in 249 aa overlap); Q9AE12|YFCA HYPOTHETICAL STRUCTURAL PROTEIN from Corynebacterium glutamicum (Brevibacterium flavum) (251 aa), FASTA scores: opt: 1231, E(): 2.6e-67, (72.9% identity in 251 aa overlap); O83487|Y474_TREPA|TP0474 HYPOTHETICAL PROTEIN from Treponema pallidum (245 aa), FASTA scores: opt: 780, E(): 4.4e-40, (47.75% identity in 245 aa overlap); P24237|YEBC_ECOLI|B1864 PROTEIN YEBC from Escherichia coli strain K12 (246 aa), FASTA scores: opt: 776, E(): 7.6e-40, (47.8% identity in 249 aa overlap); etc. HIGHLY CONSERVED HYPOTHETICAL PROTEIN	conserved protein YrbC	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	COG0217 Uncharacterized conserved protein hypothetical protein	UPF0082 protein TTHA0821	IPR002876: Protein of unknown function DUF28 putative cytoplasmic protein	Uncharacterized conserved protein, YebC family	
RICPR00440	Putative uncharacterized protein RP457	Soluble lytic murein transglycosylase and related regulatory proteins	Putative uncharacterized protein	Soluble lytic murein transglycosylase and related regulatory protein	Soluble lytic murein transglycosylase and related regulatory proteins	Putative uncharacterized protein	transglycosylase SLT family protein	Putative uncharacterized protein	VirB1 protein	
RICPR00441	Uncharacterized protein RP458	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical exported protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00442	Uncharacterized protein RP459	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark biotin synthesis protein	Biotin synthesis protein	Similar to sp|Q9ZD84|Y459_RICPR sp|O80543|Y180_ARATH rc||bioC; Ortholog to ERGA_CDS_03580 Conserved hypothetical protein	conserved hypothetical protein similar to NP_419648.1 hypothetical protein	biotin synthesis protein	Similar to sp|Q9ZD84|Y459_RICPR sp|O80543|Y180_ARATH rc||bioC; Ortholog to ERWE_CDS_03620 Conserved hypothetical protein	Biotin synthesis protein BioC	conserved hypothetical protein	conserved hypothetical protein identified by similarity to GB:AAK22816.1	Biotin biosynthesis protein BioC	unknown	biotin biosynthesis protein BioC	biotin synthesis protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	conserved hypothetical protein identified by similarity to GB:AAK22816.1	Hypothetical protein	Biotin biosynthesis protein BioC	biotin biosynthesis protein BioC TIGRFAM: biotin biosynthesis protein BioC PFAM: Methyltransferase type 11; Methyltransferase type 12 KEGG: neu:NE2297 SAM (and some other nucleotide) binding motif	Biotin biosynthesis protein BioC	biotin biosynthesis protein BioC TIGRFAM: biotin biosynthesis protein BioC PFAM: Methyltransferase type 11; Methyltransferase type 12 KEGG: vpa:VP1115 biotin synthesis protein BioC	Putative uncharacterized protein	Biotin biosynthesis protein BioC	Biotin synthesis protein BioC	Putative uncharacterized protein	Putative uncharacterized protein	Biotin synthesis protein BioC	biotin synthesis protein	Biotin synthesis protein BioC	Biotin biosynthesis protein	
RICPR00443	Dihydrolipoyl dehydrogenase	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase	Dihydrolipoyl dehydrogenase	Dihydrolipoyl dehydrogenase	Dihydrolipoamide dehydrogenase E3 component	similar to BR1918, 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase LpdA-2, 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase	Dihydrolipoyl dehydrogenase	Similar to rc||pdhD sp|P31023|DLDH_PEA sp|P09623|DLDH_PIG sp|P09622|DLDH_HUMAN sp|O00087|DLDH_SCHPO sp|O08749|DLDH_MOUSE rp||pdhD; Ortholog to ERGA_CDS_05280 Dihydrolipoamide dehydrogenase	COG1249 Lpd dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related dihydrolipoamide dehydrogenase	, predicted protein, len = 477 aa, probably dihydrolipoamide dehydrogenase; predicted pI = 6.8681; very good similarity to many dihydrolipoamide dehydrogenase proteins including DLDH_TRYCR, dihydrolipoamide dehydrogenase in Trypanosoma cruzi; contains a very good hit to a pyridine nucleotide-disulphide oxidoreductase domain and a pyridine nucleotide-disulphide oxidoreductase, dimerisation domain dihydrolipoamide dehydrogenase, putative	Similar to Bacillus stearothermophilus dihydrolipoamide dehydrogenase PdhD SWALL:DLD1_BACST (SWALL:P11959) (470 aa) fasta scores: E(): 1.3e-51, 36.94% id in 452 aa, and to Bacteroides thetaiotaomicron dihydrolipoamide dehydrogenase BT3186 SWALL:AAO78292 (EMBL:AE016939) (447 aa) fasta scores: E(): 6.7e-141, 86.13% id in 447 aa, and to Bacteroides thetaiotaomicron dihydrolipoamide dehydrogenase BT0309 SWALL:AAO75416 (EMBL:AE016927) (447 aa) fasta scores: E(): 6.5e-94, 57.87% id in 451 aa putative dihydrolipoamide dehydrogenase	Dihydrolipoyl dehydrogenase	Dihydrolipoyl dehydrogenase	Similar to rc||pdhD sp|P31023|DLDH_PEA sp|P09623|DLDH_PIG sp|P09622|DLDH_HUMAN sp|O00087|DLDH_SCHPO sp|O08749|DLDH_MOUSE rp||pdhD; Ortholog to ERWE_CDS_05380 Dihydrolipoamide dehydrogenase	identified by similarity to SP:P14218; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Pyridine nucleotide-disulphide oxidoreductase, class-II:NAD binding site:Adrenodoxin reductase:Mercuric reductase:Pyridine nu...	Dihydrolipoyl dehydrogenase	similar to Dihydrolipoamide dehydrogenase in Rhodobacter capsulatus Citation: (1997) J. Bacteriol.  179:4559-4566 Rhodobacter capsulatus Dihydrolipoamide dehydrogenase	Dihydrolipoyl dehydrogenase	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase [Source:HGNC Symbol;Acc:2898]	transcript_id=ENSOCUT00000014667	Dihydrolipoamide dehydrogenase	
RICPR00444	Putative uncharacterized protein RP461	hypothetical protein	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase family protein	Putative uncharacterized protein ybhA	Similar to Leptospira interrogans 5-formyltetrahydrofolate cyclo-ligase La1247 SWALL:Q8F6Q4 (EMBL:AE011306) (176 aa) fasta scores: E(): 4.9e-08, 28.94% id in 152 aa, and to Bacteroides thetaiotaomicron putative 5-formyltetrahydrofolate cyclo-ligase BT4258 SWALL:AAO79363 (EMBL:AE016944) (196 aa) fasta scores: E(): 1.2e-40, 70.47% id in 149 aa, and to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 8e-20, 39.73% id in 151 aa putative 5-formyltetrahydrofolate cyclo-ligase	Similar to Q8ZM70 Putative ligase from Salmonella typhimurium (182 aa). FASTA: opt: 317 Z-score: 411.1 E(): 5.2e-15 Smith-Waterman score: 317; 32.727 identity in 165 aa overlap. ORF ftt1220 5-formyltetrahydroformate cycloligase family protein	Similar to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 2.9e-10, 33.71% id in 175 aa conserved hypothetical protein	5-formyltetrahydrofolate cyclo-ligase	hypothetical protein, similar to 5-formyltetrahydrofolate cyclo-ligase family protein	5-Formyltetrahydrofolate cyclo-ligase	similar to gi|27468154|ref|NP_764791.1| [Staphylococcus epidermidis ATCC 12228], percent identity 53 in 177 aa, BLASTP E(): 4e-50 putative 5-formyltetrahydrofolate cyclo-ligase	putative 5-formyltetrahydrofolate cyclo-ligase	5,10-methenyltetrahydrofolate synthetase identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-Formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727	5-formyltetrahydrofolate cyclo-ligase subfamily identified by match to protein family HMM PF01812	5-formyltetrahydroformate cycloligase family protein Similar to Q8ZM70 Putative ligase from Salmonella typhimurium (182 aa). FASTA: opt: 317 Z-score: 411.1 E(): 5.2e-15 Smith-Waterman score: 317; 32.727 identity in 165 aa overlap. ORF ftt1220	5-formyltetrahydrofolate cyclo-ligase PFAM: 5-formyltetrahydrofolate cyclo-ligase KEGG: bur:Bcep18194_A6382 5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase PFAM: 5-formyltetrahydrofolate cyclo-ligase KEGG: bcn:Bcen_2421 5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase	5-formyltetrahydrofolate cyclo-ligase family protein	5-formyltetrahydrofolate cyclo-ligase family protein identified by match to protein family HMM PF01812	
RICPR00445	RIBONUCLEASE D	Residues 1 to 375 of 375 are 99 pct identical to residues 1 to 375 of a 375 aa protein from Escherichia coli K12 ref: NP_416318.1 RNase D, processes tRNA precursor	Ribonuclease D	Ribonuclease D	identified by match to protein family HMM PF01612; match to protein family HMM TIGR01388 ribonuclease D	Ribonuclease D	Ribonuclease D	IPR002121: HRDC domain; IPR002562: 3'-5' exonuclease; IPR006292: Ribonuclease D RNase D, processes tRNA precursor	similar to Salmonella typhi CT18 ribonuclease D ribonuclease D	similar to BR0750, ribonuclease D Rnd, ribonuclease D	Ribonuclease D	Ribonuclease D	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonuclease D, processes tRNA	Ribonuclease D	COG0349 ribonuclease D	RNase D; Similar to: HI0390, RND_HAEIN ribonuclease D	Ribonuclease D Rnd protein	Ribonuclease D	Similar to Q8YGF6 Ribonuclease D from Brucella melitensis (385 aa). FASTA: opt: 538 Z-score: 584.5 E(): 1.2e-24 Smith-Waterman score: 538; 28.919 identity in 370 aa overlap. Ribonuclease D	Ribonuclease D	ribonuclease D	identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 ribonuclease D	identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 ribonuclease D	Ribonuclease D	Ribonuclease D	ribonuclease D	processes tRNA precursor; Code: J; COG: COG0349 RNase D	HRDC domain:3'-5' exonuclease:Ribonuclease D	RNase D	
RICPR00446	Putative uncharacterized protein RP463	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Similar to Chlamydia pneumoniae yage family yage or cpn0591 or cp0157 SWALL:Q9Z7W3 (EMBL:AE001643) (216 aa) fasta scores: E(): 2.9e-73, 84.57% id in 214 aa conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized conserved protein	Protein of unknown function DUF155	Putative uncharacterized protein	conserved hypothetical protein	transcript_id=ENSDNOT00000001801	unknown	uncharacterized conserved protein COG1723	conserved hypothetical protein	transcript_id=ENSGACT00000015323	Hypothetical protein	Uncharacterized conserved protein	hypothetical membrane spanning protein	transcript_id=ENSSART00000012855	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical membrane spanning protein	
RICPR00447	Putative uncharacterized protein RP464	identified by match to protein family HMM PF01571 aminomethyl transferase family protein	Aminomethyltransferase protein	Predicted aminomethyltransferase related to GcvT	similar to BR0667, aminomethyltransferase, hypothetical aminomethyltransferase, hypothetical	Putative uncharacterized protein	Similar to rp||RP464 rc||RC0698 sp|Q09929|YAL7_SCHPO; Ortholog to ERGA_CDS_00820 Conserved hypothetical protein	conserved hypothetical protein similar to NP_220844.1 hypothetical protein	COG0354 predicted aminomethyltransferase	putative glycine cleavage T-protein (Aminomethyl transferase)	Aminomethyltransferase	GcvT-like Aminomethyltransferase protein	Similar to rp||RP464 rc||RC0698 sp|Q09929|YAL7_SCHPO; Ortholog to ERWE_CDS_00850 Conserved hypothetical protein	ortholog to Escherichia coli bnum: b2898 putative aminomethyltransferase	Aminomethyl transferase Glycine cleavage T-protein	Glycine cleavage T protein (aminomethyl transferase)	Glycine cleavage T protein(aminomethyl transferase)	Glycine cleavage T protein (aminomethyl transferase)	Citation: Plamann MD, Rapp WD, Stauffer GV. Mol Gen Genet. 1983;192(1-2):15-20. COG0354: Predicted aminomethyltransferase related to GcvT. PFam01571. aminomethyltransferase related to GcvT	Aminomethyl transferase	glycine cleavage T protein (aminomethyl transferase)	aminomethyl transferase family protein identified by match to protein family HMM PF01571	glycine cleavage T protein (aminomethyl transferase)	Glycine cleavage T-protein	putative aminomethyltransferase similarity:fasta; with=UniProt:Q8UGI4_AGRT5 (EMBL:AE008035); Agrobacterium tumefaciens (strain C58/ATCC 33970).; gcvT; Glycine cleavage system T protein,aminomethyltransferase (AGR_C_1943p).; length=282; id 62.587; 286 aa overlap; query 1-286; subject 1-278	Glycine cleavage T protein (aminomethyl transferase)	glycine cleavage T protein (aminomethyl transferase) PFAM: glycine cleavage T protein (aminomethyl transferase): (3.5e-12) KEGG: sil:SPO1246 aminomethyl transferase family protein, ev=1e-89, 69% identity	glycine cleavage T protein (aminomethyl transferase)	aminomethyl transferase family protein identified by match to protein family HMM PF01571	
RICPR00448	Sensor protein	identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 sensory box sensor histidine kinase/response regulator	Na+/proline symporter and signal transduction histidine kinase	sensor histidine kinase identified by match to protein family HMM PF00512; match to protein family HMM PF02518	Periplasmic sensor hybrid histidine kinase	integral membrane sensor hybrid histidine kinase PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein KEGG: sfr:Sfri_1829 periplasmic sensor hybrid histidine kinase	urea active transport protein go_component: membrane; go_function: transporter activity; go_process: transport	KEGG: slo:Shew_2613 integral membrane sensor hybrid histidine kinase integral membrane sensor hybrid histidine kinase	Na+/proline symporter and signal transduction histidine kinase	Sensor protein	
RICPR00449	Porphobilinogen deaminase	Residues 1 to 320 of 320 are 99 pct identical to residues 1 to 320 of a 320 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290433.1 porphobilinogen deaminase = hydroxymethylbilane synthase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	HemC protein	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase HemC	conserved gene porphobilinogen deaminase	Porphobilinogen deaminase HemC	identified by similarity to SP:P16616; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 porphobilinogen deaminase	porphobilinogen deaminase hydroxymethylbilane synthase	identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	identified by similarity to SP:P56140; match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212 porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Porphobilinogen deaminase	Mb0523, hemC, len: 309 aa. Equivalent to Rv0510, len: 309 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 309 aa overlap). Probable hemC, hydroxymethylbilane synthase (porphobilinogen deaminase) (EC 4.3.1.8), equivalent to HEM3B|Q49808|HEM3_MYCLE PORPHOBILINOGEN DEAMINASE from Mycobacterium leprae (315 aa), FASTA scores: opt: 889, E(): 0, (88.1% identity in 159 aa overlap). Also highly similar to others e.g.  Q9WX16|HE31_STRCO PROBABLE PORPHOBILINOGEN DEAMINASE from Streptomyces coelicolor (319 aa); Q9L6Q2|HEM3_SALTY PORPHOBILINOGEN DEAMINASE from Salmonella typhimurium (313 aa); etc. BELONGS TO THE HMBS FAMILY. COFACTOR: COVALENTLY BINDS A DIPYRROMETHANE COFACTOR TO WHICH THE PORPHOBILINOGEN SUBUNITS ARE ADDED. PROBABLE PORPHOBILINOGEN DEAMINASE HEMC (PBG) (HYDROXYMETHYLBILANE SYNTHASE) (HMBS) (PRE-UROPORPHYRINOGEN SYNTHASE)	InterProMatches:IPR000860; hydroxymethylbilane synthesis from porphobilinogen,Molecular Function: hydroxymethylbilane synthase activity (GO:0004418), Biological Process: porphyrin biosynthesis (GO:0006779) porphobilinogen deaminase (hydroxymethylbilane synthase)	porphobilinogen deaminase	Porphobilinogen deaminase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark porphobilinogen deaminase	Porphobilinogen deaminase	IPR000860: Porphobilinogen deaminase porphobilinogen deaminase (hydroxymethylbilane synthase)	
RICPR00450	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Residues 1 to 334 of 334 are 99 pct identical to residues 1 to 334 of a 334 aa protein from Escherichia coli K12 ref: NP_417843.1 tryptophan tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233 tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	identified by similarity to SP:P00953; match to protein family HMM PF00579; match to protein family HMM TIGR00233 tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophan-tRNA ligase	Tryptophanyl-tRNA synthetase	TrpS	Tryptophanyl-tRNA synthetase protein	Tryptophanyl-tRNA synthetase	Mb3369c, trpS, len: 336 aa. Equivalent to Rv3336c, len: 336 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 336 aa overlap). Probable trpS, tryptophanyl-tRNA synthetase (EC 6.1.1.2), equivalent to Q49901|SYW_MYCLE|TRPS|ML0686|L308_C1_147 TRYPTOPHANYL-TRNA SYNTHETASE from Mycobacterium leprae (343 aa), FASTA scores: opt: 1859, E(): 4.8e-107, (83.75% identity in 339 aa overlap). Also similar to many e.g. Q9KZA7|TRPS2 from Streptomyces coelicolor (339 aa), FASTA scores: opt: 1359, E(): 2.6e-76, (60.3% identity in 335 aa overlap); Q9EYY6|TRPS from Klebsiella aerogenes (334 aa), FASTA scores: opt: 1077, E(): 5.5e-59, (52.15% identity in 328 aa overlap); P00954|SYW_ECOLI|TRPS|B3384 from Escherichia coli strain K12 (334 aa), FASTA scores: opt: 1074, E(): 8.3e-59, (51.85% identity in 328 aa overlap); etc.  Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. PROBABLE TRYPTOPHANYL-TRNA SYNTHETASE TRPS (TRYPTOPHAN--TRNA LIGASE) (TRPRS) (TRYPTOPHAN TRANSLASE)	InterProMatches:IPR002306; Molecular Function: tryptophan-tRNA ligase activity (GO:0004830), Molecular Function: ATP binding (GO:0005524), Biological Process: tryptophanyl-tRNA aminoacylation (GO:0006436) tryptophanyl-tRNA synthetase	tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002305: Aminoacyl-tRNA synthetase, class Ib; IPR002306: Tryptophanyl-tRNA synthetase, class Ib tryptophan tRNA synthetase	Tryptophanyl-tRNA synthetase	similar to Salmonella typhi CT18 tryptophanyl-tRNA synthetase tryptophanyl-tRNA synthetase	Tryptophanyl-tRNA synthetase	similar to BR0142, tryptophanyl-tRNA synthetase TrpS, tryptophanyl-tRNA synthetase	
RICPR00451	POSSIBLE 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	Phospholipid and glycerol acyltransferase	Putative phosphate acyltransferase transmembrane protein	identified by match to protein family HMM PF01553 acyltransferase family protein	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by similarity to SP:O25903; match to protein family HMM PF01553 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative	1-acyl-sn-glycerol-3-phosphate acyltransferase protein	similar to BR1994, 1-acyl-sn-glycerol-3-phosphate acyltransferase, hypothetical 1-acyl-sn-glycerol-3-phosphate acyltransferase, hypothetical	Acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-SN-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	Similar to rp||plsC rc||plsC sp|Q59188|PLSC_BORBU; Ortholog to ERGA_CDS_00450 Possible 1-acyl-sn-glycerol-3-phosphate acyltransferase	COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase similar to NP_538993.1 1-acyl-sn-glycerol-3-phosphate acyltransferase	Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative	Similar to Q9F728 Putative N-acylhomoserine lactone synthase from Pseudomonas fluorescens (259 aa). FASTA: opt: 408 Z-score: 521.4 E(): 3.8e-21 Smith-Waterman score: 408; 34.498 identity in 229 aa overlap ORF ftt1762c Acetyltransferase protein	similar to AtaAp (GI:5002178) (Emericella nidulans); go_component: lipid particle [goid 0005811]; go_function: 1-acylglycerol-3-phosphate O-acyltransferase activity [goid 0003841]; go_process: sphingolipid biosynthesis [goid 0030148] 1-acylglycerol-3-phosphate acyltransferase (AtaAp), putative	Phospholipid and glycerol acyltransferase	acyltransferase	1-Acyl-sn-glycerol-3-phosphate acyltransferase	Similar to rp||plsC rc||plsC sp|Q59188|PLSC_BORBU; Ortholog to ERWE_CDS_00460 Possible 1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553 hdtS protein	identified by similarity to GB:AAG30826.1; match to protein family HMM PF01553 acylhomoserine lactone synthase HdtS, putative	Phospholipid/glycerol acyltransferase	Phospholipid/glycerol acyltransferase	Phospholipid/glycerol acyltransferase	1-acyl-sn-glycerol-3-phosphate acyltransferase	Best Blastp Hit: pir||G81013 1-acyl-sn-glycerol-3-phosphate acyltransferase, probable NMB2034 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7227295|gb|AAF42355.1| (AE002553) 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative [Neisseria meningitidis MC58] COG0204 1-acyl-sn-glycerol-3-phosphate; NlaB putative 1-acyl-SN-glycerol-3-phosphate acyltransferase	
RICPR00452	Uncharacterized protein RP470	Putative uncharacterized protein	AtsE-like protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00453	Uncharacterized protein RP471	Esterase/lipase/thioesterase family active site	Putative hydrolase transmembrane protein	similar to unknown protein hypothetical protein	conserved gene transmembrane protein	similar to unknown protein hypothetical protein	identified by similarity to GB:BAB47692.1 conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Alpha/beta hydrolase protein	Alpha/beta superfamily hydrolase	similar to BR0929, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Similar to sp|Q9ZD73|Y471_RICPR rc||RC0713; Ortholog to ERGA_CDS_04230 Conserved hypothetical protein	conserved family - putative hydrolase hypothetical protein	COG2945 predicted hydrolase	Putative uncharacterized protein	Similar to AAO91263 (Q83AV9) Hypothetical protein from Coxiella burnetti (205 aa). FASTA: opt: 552 Z-score: 685.2 E(): 2.6e-30 Smith-Waterman score: 552; 41.000 identity in 200 aa overlap ORF ftt1632c consvered hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Hypothetical protein	alpha/beta hydrolase	Similar to sp|Q9ZD73|Y471_RICPR rc||RC0713; Ortholog to ERWE_CDS_04290 Conserved hypothetical protein	esterase/lipase/thioesterase family protein	conserved hypothetical protein	conserved hypothetical protein	unknown	
RICPR00454	Uncharacterized protein RP472	HemY-like protein	Putative uncharacterized protein	HemY-like protein	Putative uncharacterized protein	tetratricopeptide repeat family protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00455	Uncharacterized protein RP473	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00456	Uncharacterized protein RP474	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	uroporphyrinogen-III synthase	Putative uncharacterized protein	Putative uncharacterized protein	Uroporphyrinogen-III synthase	
RICPR00457	Putative transporter ampG 1	AmpG protein	Similar to AmpG protein hypothetical protein	conserved gene beta lactamase induction signal transducer AmpG	MFS family, muropeptide transporter	Putative ampG protein	AmpG-related permease	Code: GEPR; COG: COG0477 regulates beta-lactamase synthesis	Major facilitator superfamily MFS_1	regulates beta-lactamase synthesis; Code: GEPR; COG: COG0477 AmpG	Major facilitator superfamily MFS_1	AmpG	Permease of the major facilitator superfamily COG0477	Code: GEPR; COG: COG0477 regulates beta-lactamase synthesis	Transporter, peptide-acetyl-coenzyme A transporter (PAT) family	Major facilitator superfamily MFS_1	AmpG muropeptide MFS transporter	AmpG-related permease identified by match to protein family HMM PF07690	Beta-lactamase induction signal transducer AmpG precursor	Hypothetical protein	regulates beta-lactamase synthesis Code: GEPR; COG: COG0477	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: rso:RSc0154 transport transmembrane protein	AmpG muropeptide MFS transporter	Permease of the major facilitator superfamily	Beta lactamase induction signal transducer AmpG	Lodderomyces elongisporus (LELG_04444.1) hypothetical protein similar to acetyl coenzyme A transporter (translation)	AmpG protein	AmpG	AmpG	
RICPR00458	LIPOPOLYSACCHARIDE 1,2-GLUCOSYLTRANSFERASE	Lipopolysaccharide 1,2-glucosyltransferase RfaJ	Lipopolysaccharide 1,2-glucosyltransferase RfaJ	
RICPR00459	ADP,ATP carrier protein 3	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein homolog	ADP,ATP carrier protein	
RICPR00460	Uncharacterized protein RP478	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00461	OCTAPRENYL-DIPHOSPHATE SYNTHASE	Octaprenyl-diphosphate synthase	Octaprenyl diphosphate synthase	Residues 1 to 323 of 323 are 100 pct identical to residues 1 to 323 of a 323 aa protein from Escherichia coli K12 ref: NP_417654.1 octaprenyl diphosphate synthase	Octaprenyl-diphosphate synthase	Polyprenyl synthetase	Heptaprenyl diphosphate syntase component II	IspB protein	Probable octaprenyl-diphosphate synthase (Octaprenyl pyrophosphate synthase) protein	Octaprenyl-diphosphate synthase	similar to octaprenyl-diphosphate synthase hypothetical protein	conserved gene octaprenyl diphosphate synthase IspB	similar to octaprenyl-diphosphate synthase hypothetical protein	identified by match to protein family HMM PF00348 polyprenyl synthetase	solanesyl diphosphate synthase	identified by similarity to GB:CAD24417.1; match to protein family HMM PF00348 decaprenyl diphosphate synthase	Octaprenyl-diphosphate synthase	Octaprenyl-diphosphate synthase	Heptaprenyl diphosphate syntase component II	Geranylgeranyl pyrophosphate synthase	GrcC1	InterProMatches:IPR000092, IPR000092; menaquinone biosynthesis, Biological Process: isoprenoid biosynthesis (GO:0008299),Biological Process: isoprenoid biosynthesis (GO:0008299) heptaprenyl diphosphate synthase component II	spore germination protein C3 heptaprenyl diphosphate synthase component II	Octaprenyl-diphosphate synthase	Octaprenyl-diphosphate synthase	IPR000092: Polyprenyl synthetase octaprenyl diphosphate synthase	Geranylgeranyl pyrophosphate synthase	similar to Salmonella typhi CT18 octaprenyl-diphosphate synthase octaprenyl-diphosphate synthase	Putative uncharacterized protein	
RICPR00462	Putative uncharacterized protein RP482	identified by match to protein family HMM PF00557 metallopeptidase, family M24	Probable peptidase, M24 family protein	identified by match to protein family HMM PF00557 peptidase, M24 family	Aminopeptidase P protein	Xaa-Pro aminopeptidase	similar to BR1418, aminopeptidase P aminopeptidase P	Aminopeptidase p protein	Putative aminopeptidase	Peptidase, putative	Similar to rp||RP482 rc||RC0725; Ortholog to ERGA_CDS_05540 Conserved hypothetical protein, similarity with aminopeptidases	conserved family - putative aminopeptidase P hypothetical protein	COG0006 aminopeptidase P	Xaa-Pro aminopeptidase	Similar to Sus scrofa Xaa-Pro aminopeptidase 2 precursor Xpnpep2 SWALL:XPP2_PIG (SWALL:Q95333) (673 aa) fasta scores: E(): 6.6e-61, 37.1% id in 601 aa, and to Bacteroides thetaiotaomicron putative aminopeptidase BT2743 SWALL:Q8A460 (EMBL:AE016937) (593 aa) fasta scores: E(): 6.9e-187, 76.56% id in 593 aa putative peptidase	Peptidase, M24 family protein	Similar to Q83F75 Peptidase, M24 family protein from Coxiella burnetii (597 aa). FASTA: opt: 1665 Z-score: 1963.9 E(): 1.7e-101 Smith-Waterman score: 1665; 45.286 identity in 594 aa overlap ORF ftt0609 Peptidase, M24 family protein	Xaa-Pro aminopeptidase	Xaa-Pro aminopeptidase	Similar to rp||RP482 rc||RC0725; Ortholog to ERWE_CDS_05650 Conserved hypothetical protein, similarity with aminopeptidases	identified by match to protein family HMM PF00557 peptidase, M24 family protein	identified by match to protein family HMM PF00557 peptidase, M24 family protein	Peptidase M24	Aminopeptidase P	Best Blastp Hit: pir||D81858 probable aminopeptidase NMA1640 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380282|emb|CAB84868.1| (AL162756) putative aminopeptidase [Neisseria meningitidis] COG0006 Xaa-Pro aminopeptidase putative aminopeptidase	peptidase M24	Peptidase M24	Metallopeptidase family M24	May have aspartic-type endopeptidase activity aminopeptidase P	
RICPR00463	PUTRESCINE-ORNITHINE ANTIPORTER	Molecular Function: amino acid-polyamine transporter activity (GO:0005279), Biological Process: amino acid transport (GO:0006865), Cellular Component: membrane (GO:0016020) putative amino acid transporter YvsH	Amino acid transporter	amino acid permease, putative	identified by sequence similarity; putative; ORF located using Glimmer; Blastx; COG0531; TC:2.A.3.6.1 amino acid permease	Putrescine-ornithine antiporter	Code: E; COG: COG0531 putative amino acid/amine transport protein, cryptic	Code: E; COG: COG0531 putative amino acid/amine transport protein, cryptic	Amino acid transporter	Putrescine-ornithine antiporter	Code: E; COG: COG0531 putative amino acid/amine transport protein, cryptic	Amino acid permease-associated region	amino acid transporter	transcript_id=ENSFCAT00000006626	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: bur:Bcep18194_B0780 amino acid transporter	transcript_id=ENSEEUT00000008798	transcript_id=ENSSTOT00000007217	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: bcn:Bcen_4355 amino acid permease-associated region	putative cadaverine:lysine antiporter identified by similarity to SP:P0AAE8; match to protein family HMM PF00324	Cadaverine/lysine antiporter	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: son:SO0313 putrescine-ornithine antiporter	amino acid permease-associated region PFAM: amino acid permease-associated region KEGG: mmc:Mmcs_2463 amino acid permease-associated region	Magnaporthe grisea hypothetical protein	Putrescine-ornithine antiporter	Putrescine-ornithine antiporter	Amino acid permease-associated region	Putrescine-ornithine antiporter	Amino acid permease-associated region	amino acid permease	
RICPR00464	Uncharacterized protein RP484	Residues 3 to 109 of 109 are 100 pct identical to residues 1 to 107 of a 107 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289085.1 putative regulator	Iron-binding protein iscA	Putative uncharacterized protein iscA	Iron-binding protein iscA	similar to HesB/YadR/YfhF family proteins hypothetical protein	conserved gene HesB family protein	similar to HesB/YadR/YfhF family proteins hypothetical protein	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 iron-sulfur cluster assembly accessory protein	Probable HesB-like protein	Uncharacterized HesB family conserved protein	IPR000361: Protein of unknown function, HesB/YadR/YfhF putative regulator	HesB/YadR/YfhF family protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR0939, HesB/YadR/YfhF family protein HesB/YadR/YfhF family protein	Putative uncharacterized protein	Iron-binding protein iscA	HesB-like protein	Similar to sp|Q9ZD62|Y484_RICPR rc||hesB2 sp|Q07821|YL27_YEAST sp|P44672|YFHF_HAEIN sp|P36539|YFHF_ECOLI; Ortholog to ERGA_CDS_04270 Conserved hypothetical protein	HesB/YadR/YfhF family protein	COG0316 conserved hypothetical protein	HesB protein family	Similar to: HI0376, YFHF_HAEIN conserved hypothetical protein	Uncharacterized ACR IscA protein	Similar to AAP95950 HesB family protein from Haemophilus ducreyi (107 aa). FASTA: opt: 288 Z-score: 392.8 E(): 5.5e-14 Smith-Waterman score: 288; 41.121 identity in 107 aa overlap ORF ftt0579 hesB family protein	Iron-binding protein iscA	IscA protein involved in Fe-S cluster synthesis	identified by similarity to GP:23345069; match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 iron-sulfur cluster assembly protein	
RICPR00465	NifU-like protein	NifU family protein	Probable iron-binding protein	NifU protein	identified by match to protein family HMM PF01592 NifU domain protein	IscU	NifU family protein	Nitrogen fixation protein NifU	NifU homologs involved in Fe-S cluster formation	NifU homolog involved in Fe-S cluster formation	similar to Salmonella typhi CT18 NifU-like protein NifU-like protein	NifU family protein	NifU-like protein	IscU protein	best blastp match gb|AAK33358.1| (AE006495) similar to NifU protein [Streptococcus pyogenes M1 GAS] putative NifU protein	Similar to sp|Q9ZD61|NIFU_RICPR sp|Q57074|NIFU_HAEIN sp|P77310|NIFU_ECOLI sp|P57658|NIFU_BUCAI; Ortholog to ERGA_CDS_04260 NifU-like protein	Evidence 2b : Function of strongly homologous gene iron-binding protein believed to be involved in Fe-S protein formation or repair	COG0822 IscU NifU homologs involved in Fe-S cluster formation iron-sulfur cofactor synthesis protein	NifU family protein	IscU protein	Similar to: HI0377, NIFU_HAEIN NifU-like protein	iron-sulfur cluster assembly protein, putative	NifU similarity involved in Fe-S cluster formation IscU protein	Iron-binding protein IscU	NifU-like protein	NifU homolog	IscU protein involved in Fe-S cluster formation	identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999 iron-sulfur cluster assembly protein IscU	
RICPR00466	Cysteine desulfurase	Cysteine desulfurase	YfhO protein	Cysteine desulfurase	Cysteine desulfurase	similar cysteine desulfurase hypothetical protein	conserved gene cysteine desulfurase NifS	similar cysteine desulfurase hypothetical protein	cysteine desulfurase NifS	Cysteine desulfurase	Cysteine desulfurase	L-cysteine desulfurase	IPR000192: Aminotransferase, class V putative aminotransferase class-V	Cysteine sulfinate desulfinase/cysteine desulfurase	similar to Salmonella typhi CT18 putative L-cysteine desulfurase putative L-cysteine desulfurase	Cysteine desulfurase	NifS-like aminotranfserase	Similar to sp|Q92HP1|ISCS_RICCN sp|Q9ZD60|ISCS_RICPR; Ortholog to ERGA_CDS_04250 Cysteine desulfurase (NifS protein homolog)	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase )	COG1104 cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes cysteine desulfurase	Cysteine desulfurase	selenocysteine lyase cysteine desulfhydrase	Similar to: HI0378, ISCS_HAEIN cysteine desulfurase	Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes NifS protein	Cysteine desulfurase	Similar to ISCS_VIBCH (Q9KTY2) Cysteine desulfurase (EC 4.4.1.-) from Vibrio cholerae (404 aa). FASTA: opt: 1104 Z-score: 1336.0 E(): 1.6e-66 Smith-Waterman score: 1104; 45.812 identity in 382 aa overlap. cysteine desulfarase	cysteine desulfurase Cysteine sulfinate desulfinase	Cysteine desulfurase	
RICPR00467	NIFS PROTEIN HOMOLOG	Similarities with NifS protein	Cysteine sulfinate desulfinase/cysteine desulfurase	Cysteine sulfinate desulfinase/cysteine desulfurase	Similar to rp||spl1 rc||spl1 sp|O54055|ISCS_RUMFL sp|P12623|NIFS_ANASP; Ortholog to ERGA_CDS_04240 Cysteine desulfurase (NifS protein homolog) duplication	conserved family - putative aminotransferase hypothetical protein	Cysteine desulfurase	cysteine sulfinate desulfinase; COG1104 cysteine desulfurase	putative cysteine desulfurase involved in Fe-S cluster formation	Similar to rp||spl1 rc||spl1 sp|O54055|ISCS_RUMFL sp|P12623|NIFS_ANASP; Ortholog to ERWE_CDS_04300 Cysteine desulfurase (NifS protein homolog) duplication	Nifs protein homolog	protein of unknown function UPF0074	possible cysteine desulfurase (class-V aminotransferase family)	aminotransferase, class V	Cysteine desulfurase (Class-V aminotransferase family)-like protein	transcript_id=ENSOCUT00000002775	transcript_id=ENSDNOT00000017282	cysteine desulfurase EC 4.4.1.-	Aminotransferase, class V	rrf2 family protein /cysteine desulfurase identified by similarity to GB:AAL10759.1; match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082	pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein) similar to nifS (SMc00529) [Sinorhizobium meliloti] and AGR_C_3350p [Agrobacterium tumefaciens] Similar to swissprot:Q92PK8 Putative location:bacterial cytoplasm Psort-Score: 0.2454; go_function: transaminase activity [goid 0008483]; go_process: metabolism [goid 0008152]	cysteine desulfurase	possible cysteine desulfurase (class-V aminotransferase family)	Cysteine desulfhydrase	rrf2/aminotransferase, class V family protein identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF02082; match to protein family HMM TIGR00738	Cysteine sulfinate desulfinase or Cysteine desulfhydrase cytoplasmic protein	Cysteine sulfinate desulfinase or Cysteine desulfhydrase cytoplasmic protein	possible cysteine desulfurase (class-V aminotransferase family) COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	Cysteine desulfurase PFAM: aminotransferase, class V KEGG: rsp:RSP_0442 putative aminotransferase	

RICPR00469	Uncharacterized protein RP489	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00470	Putative uncharacterized protein RP490	Putative sspA; transcription modulator protein	Probable stringent starvation a transcription regulator protein	identified by match to protein family HMM PF02798 glutathione S-transferase family protein	Glutathione S-transferase protein	Glutathione S-transferase	similar to BRA1044, glutathione S-transferase family protein glutathione S-transferase family protein	Glutathione S-transferase	Similar to rc||RC0782 rp||RP490; Ortholog to ERGA_CDS_02530 Unkown function (putative glutathione S-transferase)	COG0625 Gst glutathione-S-transferases similar to NP_360419.1 glutathione S-transferase	COG0625 glutathione S-transferase family protein	Glutathione S-transferase	Similar to rc||RC0782 rp||RP490; Ortholog to ERWE_CDS_02570 Unkown function (putative glutathione S-transferase)	Glutathione S-transferase, N-terminal	Glutathione S-transferase	glutathione S-transferase	Glutathione S-transferase, N-terminal	Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative glutathione S-transferase	Catalytic residues proposed to reside in the N-terminal domain of the protein. Glutathione S-transferase	Glutathione S-transferase-like protein	glutathione S-transferase-like	Glutathione S-transferase-like	stringent starvation protein (glutathione S-transferase)	stringent starvation protein a	Glutathione S-transferase-like	glutathione S-transferase-like	Glutathione S-transferase	Glutathione S-transferase	

RICPR00471	Pyruvate, phosphate dikinase	Pyruvate phosphate dikinase	identified by similarity to SP:P22983; match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828 pyruvate phosphate dikinase	identified by match to protein family HMM PF00391; match to protein family HMM PF02896 pyruvate, phosphate dikinase	Phosphoenolpyruvate-protein phosphatase	Pyruvate, phosphate dikinase	Pyruvate orthophosphate dikinase	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	similar to BR0500, pyruvate,phosphate dikinase PpdK, pyruvate,phosphate dikinase	Putative uncharacterized protein gbs1714	Pyruvate phosphate dikinase	identified by match to PFAM protein family HMM PF00391 pyruvate phosphate dikinase	Similar to sp|Q9ZD55|PODK_RICPR sp|Q92HI8|PPDK_RICCN; Ortholog to ERGA_CDS_06940 Pyruvate,phosphate dikinase	identified by similarity to SP:P22983; match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828 pyruvate, phosphate dikinase	COG0574 PpsA phosphoenolpyruvate synthase/pyruvate phosphate dikinase pyruvate, phosphate dikinase precursor	Pyruvate, phosphate dikinase	, predicted protein, len = 915 aa, probably pyruvate phosphate dikinase 2; predicted pI = 8.6318; contains predicted helix-turn-helix motif; good similarity to many pyruvate phosphate dikinase proteins in cluding the kinetoplastids Trypanosoma cruzi and Trypanosoma brucei pyruvate phosphate dikinase, putative	Similar to Clostridium symbiosum pyruvate,phosphate dikinase PpdK SWALL:PODK_CLOSY (SWALL:P22983) (873 aa) fasta scores: E(): 1.8e-129, 58.58% id in 903 aa, and to Bacteroides thetaiotaomicron pyruvate phosphate dikinase BT0644 SWALL:AAO75751 (EMBL:AE016928) (906 aa) fasta scores: E(): 0, 93.48% id in 905 aa pyruvate,phosphate dikinase	Similar to Q8RB43 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase from Thermoanaerobacter tengcongensis (875 aa). FASTA: opt: 3545 Z-score: 4080.1 E(): 0 Smith-Waterman score: 3545; 61.812 identity in 872 aa overlap phosphoenolpyruvate synthase/pyruvate phosphate dikinase	phosphate dikinase (PPDK)	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Similar to sp|Q9ZD55|PODK_RICPR sp|Q92HI8|PPDK_RICCN; Ortholog to ERWE_CDS_07020 Pyruvate,phosphate dikinase	pyruvate, phosphate dikinase	Pyruvate,phosphate dikinase precursor	identified by similarity to SP:P22983; match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828 pyruvate, phosphate dikinase	pyruvate, phosphate dikinase	Pyruvate,phosphate di kinase	similar to gi|27469078|ref|NP_765715.1| [Staphylococcus epidermidis ATCC 12228], percent identity 73 in 871 aa, BLASTP E(): 0.0 phosphoenolpyruvate synthase	
RICPR00472	Putative aldolase class 2 protein RP493	Putative aldolase protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative aldolase	Similar to Q88IX8 Class II aldolase/adducin domain protein from Pseudomonas putida (strain KT2440) (251 aa).  FASTA: opt: 472 Z-score: 599.3 E(): 1.7e-25 Smith-Waterman score: 472; 38.579identity in 197 aa overlap. ORF ftt0665c Aldolase/adducin class II family protein	identified by similarity to SP:Q9HYH5; match to protein family HMM PF00596 class II aldolase/adducin domain protein	identified by match to protein family HMM PF00596 class II aldolase/adducin domain protein	Class II aldolase/adducin, N-terminal	Class II aldolase/adducin, N-terminal	Class II aldolase/adducin, N-terminal	Evidence 4 : Homologs of previously reported genes of unknown function; Product type e : enzyme conserved protein of unknown function ; putative aldolase class II family	class II aldolase/adducin domain protein identified by match to protein family HMM PF00596	Erythrocyte adducin alpha subunit	Aldolase, putative	Class II aldolase/adducin family protein	class II aldolase/adducin-like	class II aldolase/adducin-like protein	Aldolase/adducin class II family protein Similar to Q88IX8 Class II aldolase/adducin domain protein from Pseudomonas putida (strain KT2440) (251 aa).  FASTA: opt: 472 Z-score: 599.3 E(): 1.7e-25 Smith-Waterman score: 472; 38.579identity in 197 aa overlap. ORF ftt0665c	class II aldolase/adducin domain protein COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	class II aldolase/adducin-like	class II aldolase/adducin family protein PFAM: class II aldolase/adducin family protein KEGG: bur:Bcep18194_B1139 hypothetical protein	class II aldolase/adducin family protein PFAM: class II aldolase/adducin family protein KEGG: reu:Reut_A0893 hypothetical protein	Class II aldolase/adducin family protein	Putative Class II aldolase/adducin	class II aldolase/adducin domain protein identified by match to protein family HMM PF00596	ribulose-5-phosphate 4-epimerase, AraD cytoplasmic protein domain identity suggests this CDS encodes an AraD- like, ribulose-5-phosphate 4-epimerase. this enzyme and related epimerases and aldolases are involved in carbohydrate transport and metabolism.	sugar phosphate aldolase	Class II aldolase/adducin	Probable aldolase	
RICPR00473	UPF0124 protein RP494	Residues 1 to 243 of 243 are 98 pct identical to residues 1 to 243 of a 243 aa protein from Escherichia coli K12 ref: NP_417084.1 orf, conserved hypothetical protein	Similar to unknown protein YfiH of Escherichia coli	identified by similarity to SP:Q9ZHA4; match to protein family HMM PF02578; match to protein family HMM TIGR00726 conserved hypothetical protein TIGR00726	identified by similarity to GB:CAC46924.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726 conserved hypothetical protein TIGR00726	UPF0124 protein XF_0940	Hypothetical protein SE0862	Uncharacterized YfiH family conserved protein	identified by similarity to SP:P94338; match to protein family HMM PF02578 conserved hypothetical protein	conserved hypothetical protein	putative inner membrane protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BMEI0486, identified by sequence similarity to BR1530, conserved hypothetical protein TIGR00726 conserved hypothetical protein TIGR00726	Putative uncharacterized protein	Putative uncharacterized protein	COG1496 conserved hypothetical protein	Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4389 SWALL:AAO79494 (EMBL:AE016945) (270 aa) fasta scores: E(): 4.2e-74, 67.65% id in 269 aa, and to Myxococcus xanthus hypothetical protein SWALL:AAO22912 (EMBL:AY204472) (253 aa) fasta scores: E(): 4.3e-21, 35.82% id in 254 aa, and to Brucella melitensis hypothetical cytosolic protein Bmei0486 SWALL:Q8YIF8 (EMBL:AE009491) (265 aa) fasta scores: E(): 1.5e-20, 33.99% id in 253 aa conserved hypothetical protein	Putative inner membrane protein	conserved hypothetical protein	conserved hypothetical protein	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 conserved hypothetical protein TIGR00726	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 conserved hypothetical protein TIGR00726	Protein of unknown function DUF152	Conserved hypothetical protein	Protein of unknown function DUF152	Code: S; COG: COG1496 conserved hypothetical protein	Protein of unknown function DUF152	Evidence 4 : Homologs of previously reported genes of unknown function conserved protein of unknown function	COG1496, Uncharacterized conserved protein.  pfam02578, DUF152, Uncharacterized ACR, YfiH family COG1496 conserved hypothetical protein TIGR00726	
RICPR00474	Putative uncharacterized protein RP495	Similar to rp||RP495 rc||RC0671; Ortholog to ERGA_CDS_01400 Putative glutamine synthetase	COG0174 GlnA glutamine synthase other copies include: AM1206; go_process: 0009399 glutamine synthetase	Similar to rp||RP495 rc||RC0671; Ortholog to ERWE_CDS_01440 Putative glutamine synthetase	Glutamine synthetase	Glutamine synthetase, catalytic domain	glutamine synthetase domain protein identified by similarity to SP:P78061; match to protein family HMM PF00120	Glutamine synthetase	glutamine synthetase domain protein identified by similarity to SP:P78061; match to protein family HMM PF00120	glutamine synthetase domain protein identified by similarity to SP:P78061; match to protein family HMM PF00120	Glutamine synthetase	Putative uncharacterized protein	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase	glutamine synthetase	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase	Glutamine synthetase/guanido kinase, catalytic region	Glutamine synthetase, catalytic domain protein	
RICPR00475	Putative uncharacterized protein RP496	Putative uncharacterized protein	Ribonuclease BN	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN, putative	BrkB protein	identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765 ribonuclease BN	Ribonuclease protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease BN	tRNA processing exoribonuclease BN	Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct132 hypothetical protein Cpn0188 SWALL:Q9Z8Z6 (EMBL:AE001605) (430 aa) fasta scores: E(): 4.4e-118, 66.97% id in 430 aa. Note contains a protein motif similar to the Ribonuclease BN-like family of proteins. putative inner membrane protein	similar to BR1978, ribonuclease BN, hypothetical ribonuclease BN, hypothetical	Ribonuclease BN	Ribonuclease RNAse bn transmembrane protein	Putative uncharacterized protein	best blastp match gb|AAK34181.1| (AE006573) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Similar to rc||RC0670 rp||RP496; Ortholog to ERGA_CDS_05110 Conserved hypothetical protein	conserved family - putative ribonuclease BN hypothetical protein	Putative ribonuclease BN	COG1295 conserved hypothetical membrane protein	Similar to Anabaena sp. hypothetical protein ALR3393 SWALL:Q8YRQ1 (EMBL:AP003592) (314 aa) fasta scores: E(): 5e-34, 34.55% id in 301 aa, and to Bordetella pertussis serum resistance protein BrkB or BP3493 SWALL:CAE43754 (EMBL:BX640421) (296 aa) fasta scores: E(): 1e-23, 32.15% id in 255 aa putative ribonuclease	Ribonuclease BN family enzyme	putative membrane protein	Similar to rc||RC0670 rp||RP496; Ortholog to ERWE_CDS_05200 Conserved hypothetical protein	Ribonuclease BN	Ribonuclease BN, putative	ribonuclease BN	ribonuclease BN	Putative serum resistance locus BrkB	Ribonuclease BN	
RICPR00476	Uncharacterized HTH-type transcriptional regulator RP497	similar to BR2159, transcriptional regulator, Cro/CI family transcriptional regulator, Cro/CI family	Predicted transcriptional regulator	transcriptional regulator, XRE family	Helix-turn-helix motif	transcriptional regulator, XRE family	Putative transcriptional regulator	Transcriptional Regulator, XRE family	transcriptional regulator, XRE family PFAM: helix-turn-helix motif: (2e-07) KEGG: jan:Jann_1232 transcriptional regulator, XRE family, ev=2e-29, 54% identity	transcriptional regulator, XRE family	transcriptional regulator, XRE family	transcriptional regulator	DNA-binding protein	Predicted transcriptional regulator	transcriptional regulator, XRE family PFAM: helix-turn-helix domain protein KEGG: rpc:RPC_0473 transcriptional regulator, XRE family	transcriptional regulator, XRE family PFAM: helix-turn-helix motif KEGG: atc:AGR_C_630 hypothetical protein	Transcriptional regulator, Cro/CI family	Transcriptional regulator, XRE family	Putative transcriptional regulator	Putative uncharacterized protein	Putative transcriptional regulator	Putative transcriptional regulator	Putative uncharacterized protein	hypothetical protein GO_function: DNA binding [GO ID 0003677]	transcriptional regulator	Predicted transcriptional regulator	transcriptional regulator hypothetical protein	Transcriptional regulator, XRE family	Putative uncharacterized protein	


RICPR00477	ADP,ATP carrier protein 4	ATP/ADP translocase	ADP/ATP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	Pyruvate phosphate dikinase	ADP,ATP carrier protein homolog	ADP,ATP carrier protein	ATP/ADP translocase	
RICPR00478	Putative tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	Similar to Haemophilus influenzae tRNA pseudouridine synthase B TruB or hi1289 SWALL:TRUB_HAEIN (SWALL:P45142) (312 aa) fasta scores: E(): 4.1e-29, 41.79% id in 201 aa and Clostridium acetobutylicum pseudouridine synthase cac1805 SWALL:Q97I48 (EMBL:AE007689) (289 aa) fasta scores: E(): 1.2e-31, 45.22% id in 199 aa tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	Similar to Bacteroides thetaiotaomicron tRNA pseudouridine synthase B BT3213 SWALL:AAO78319 (EMBL:AE016939) (240 aa) fasta scores: E(): 1.6e-76, 83.33% id in 234 aa, and to Cytophaga johnsonae tRNA pseudouridine synthase B TruB SWALL:TRUB_CYTJO (SWALL:Q9RB36) (229 aa) fasta scores: E(): 2.7e-43, 52.94% id in 221 aa, and to Oryza sativa putative tRNA synthase SWALL:Q94HL3 (EMBL:AC079022) (525 aa) fasta scores: E(): 5.1e-31, 45.17% id in 228 aa. Although the similarities are to the entire proteins, only the N-terminal domain of the TruB family pseudouridylate synthase is present putative tRNA pseudouridine synthase	tRNA pseudouridine synthase B identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B EC 4.2.1.70	tRNA pseudouridine synthase B	pseudouridylate synthase (pseudouridine synthase)	tRNA pseudouridine synthase B	Pseudouridine synthase	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	Putative uncharacterized protein	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	tRNA-pseudouridine synthase I	tRNA pseudouridine synthase B	tRNA pseudouridine synthase B	

RICPR00480	30S ribosomal protein S15	30S ribosomal protein s15	30S ribosomal protein S15	Residues 1 to 89 of 89 are 100 pct identical to residues 1 to 89 of a 89 aa protein from Escherichia coli K12 ref: NP_417634.1 30S ribosomal subunit protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30s ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	conserved gene 30S ribosomal protein S15 (S15/S13E)	30S ribosomal protein S15	30S ribosomal protein S15	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	30S ribosomal protein S15	SSU ribosomal protein S15P	30S ribosomal protein S15	identified by similarity to SP:P02371; match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	30S ribosomal protein S15	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952 ribosomal protein S15	
RICPR00481	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Residues 7 to 740 of 740 are 99 pct identical to residues 1 to 734 of a 734 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289740.1 polynucleotide phosphorylase; cytidylate kinase activity	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polynucleotide phosphorylase (PNPase)	conserved gene polyribonucleotide nucleotidyltransferase	Polynucleotide phosphorylase (PNPase)	identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	polyribonucleotide nucleotidyltransferase	identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	polynucleotide phosphorylase, (PNPase)	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR01369 polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase	Polyribonucleotide nucleotidyltransferase protein	Polyribonucleotide nucleotidyltransferase	Mb2806c, gpsI, len: 752 aa. Equivalent to Rv2783c, len: 752 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 752 aa overlap). Probable gpsI, polyribonucleotide nucleotidyltransferase (EC 2.7.7.8; 2.7.6.-), equivalent to Q9CCF8|GPSI|ML0854 (alias O32966) PUTATIVE POLYRIBONUCLEOTIDE PHOSPHORYLASE / GUANOSINE PENTAPHOSPHATE SYNTHETASE from Mycobacterium leprae (773 aa), FASTA scores: opt: 4304, E(): 0, (89.95% identity in 757 aa overlap). Also highly similar to others e.g.  O86656|GPSI GUANOSINE PENTAPHOSPHATE SYNTHETASE/ POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (FRAGMENT) from Streptomyces coelicolor (716 aa), FASTA scores: opt: 3393, E(): 5.8e-192, (72.77% identity in 718 aa overlap); Q53597|GPSI GUANOSINE PENTAPHOSPHATE SYNTHETASE from Streptomyces antibioticus (740 aa), FASTA scores: opt: 3314, E(): 2.6e-187, (70.55% identity in 733 aa overlap); P72659|PNP|SLL1043 POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE from Synechocystis sp. strain PCC 6803 (718 aa), FASTA scores: opt: 1244, E(): 1.7e-65, (45.05% identity in 750 aa overlap); etc. Note that S.  antibioticus guanosine pentaphosphate synthetase is a multifunctional enzyme that also acts as a polyribonucleotide nucleotidyltransferase. Start site chosen by homology from several alternatives. BIFUNCTIONAL PROTEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE GPSI: GUANOSINE PENTAPHOSPHATE SYNTHETASE + POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE PHOSPHORYLASE) (PNPASE)	InterProMatches:IPR001247, IPR001247; necessary for competence development (expression of late competence genes comG and comK, requirement bypassed by a mecA disruption) may be necessary for modification of the srfA transcript (stabilization or translation activation), Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396) polynucleotide phosphorylase (PNPase)	
RICPR00482	Uncharacterized protein RP505	Uncharacterized protein CT_399	Arabinose 5-phosphate isomerase	YrbH protein	Putative sugar isomerase (Sis) protein	Similar to putative isomerase YrbH of Escherichia coli	Similar to arabinose 5-phosphate isomerase hypothetical protein	conserved gene polysialic acid capsule expression protein	Similar to arabinose 5-phosphate isomerase hypothetical protein	hypothetical protein	identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose 5-phosphate isomerase	Probable KpsF/GutQ family protein	Polysialic acid capsule expression protein	identified by similarity to EGAD:20643; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 arabinose-5-phosphate isomerase	Polysialic acid capsule expression protein	Sugar phosphate isomerase involved in capsule formation	Similar to Chlamydia muridarum hypothetical protein Tc0679 tc0679 SWALL:Y679_CHLMU (SWALL:Q9PJZ7) (328 aa) fasta scores: E(): 3.4e-89, 67.17% id in 329 aa and Yersinia pestis arabinose 5-phosphate isomerase kdsd or ypo3577 or y0149 or yp3832 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 1.3e-32, 35.22% id in 318 aa conserved hypothetical protein	Putative uncharacterized protein	similar to BRA0073, sugar isomerase, KpsF/GutQ sugar isomerase, KpsF/GutQ	Polysialic acid capsule expression protein	Polysialic acid capsule expression protein	Hypothetical protein JHP1324	Putative uncharacterized protein	Hypothetical protein	Citation: Tzeng et al. (2002) J. Biol. Chem 277(27):24103-24113. putative polysialic acid capsule expression protein KpsF	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme D-arabinose 5-phosphate isomerase	with CBS domain; COG0794 conserved hypothetical protein	Predicted sugar phosphate isomerase involved in capsule formation GutQ protein	Similar to Q8KLW6 Hypothetical protein from Pseudomonas stutzeri (Pseudomonas perfectomarina) (324 aa).  FASTA: opt: 1095 Z-score: 1307.1 E(): 6.5e-65 Smith-Waterman score: 1095; 54.489 identity in 323 aa overlap. Homologs are involved in sialic acid capsule biosynthesis in some pathogenic strains of Escherichia coli. arabinose phosphate isomerase	
RICPR00483	Uncharacterized protein RP506	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00484	Uncharacterized protein RP507	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00485	ABC TRANSPORTER ATP-BINDING PROTEIN	ABC transporter ATP-binding protein	ABC transporter, ATPase subunit	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	Abc transporter atp-binding protein	ABC transporter related	ABC transporter-related protein	ABC transporter ATP-binding protein	ABC transporter, ATPase subunit	ABC transporter related	ABC transporter related	ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	
RICPR00486	PHOSPHOMANNOMUTASE	Phosphomannomutase	Phosphomannomutase/phosphoglucomutase	phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I PFAM: phosphoglucomutase/phosphomannomutase C terminal: (0.00053) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I: (2e-28) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II: (1e-25) phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III: (0.0012) KEGG: sil:SPO0946 phosphomannomutase/phosphoglucomutase, ev=0.0, 90% identity	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II	Phosphomannomutase	Putative phosphoglucomutase/phosphomannomutase	Phosphomannomutase	phosphoglucomutase/phosphomannomutase family protein identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880	phosphomannomutase Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 1903398, 7515870, 10481091, 8050998, 11716469, 11839312; Product type e : enzyme	phosphomannomutase/phosphoglucomutase identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase/phosphoglucomutase	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II	Phosphomannomutase	Phosphomannomutase	Phosphomannomutase/phosphoglucomutase	
RICPR00487	tRNA dimethylallyltransferase	RNA delta (2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	Residues 1 to 316 of 316 are 99 pct identical to residues 1 to 316 of a 316 aa protein from Escherichia coli K12 ref: NP_418592.1 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase	tRNA dimethylallyltransferase	tRNA Delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	MiaA	tRNA dimethylallyltransferase	tRNA dimethylallyltransferase	similar to tRNA delta(2)-isopentenylpyrophosphate transferase hypothetical protein	conserved gene tRNA delta(2)-isopentenylpyrophosphate transferase	similar to tRNA delta(2)-isopentenylpyrophosphate transferase hypothetical protein	tRNA dimethylallyltransferase	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA delta-2-isopentenylpyrophosphate transferase	identified by similarity to SP:P38436; match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA isopentenylpyrophosphate transferase, putative	tRNA dimethylallyltransferase	tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174 tRNA delta(2)-isopentenylpyrophosphate transferase	tRNA dimethylallyltransferase	tRNA Delta(2)-isopentenylpyrophosphate transferase	tRNA Delta(2)-isopentenylpyrophosphate transferase	
RICPR00488	Uncharacterized protein RP511	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	tRNA delta(2)-isopentenylpyrophosphate transferase	Putative uncharacterized protein	
RICPR00489	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN	Ribonucleoside-diphosphate reductase subunit beta	Ribonucleoside-diphosphate reductase 1 beta chain	Ribonucleotide reductase	NrdF protein	Ribonucleoside-diphosphate reductase subunit beta	Putative transmembrane ribonucleoside reductase (Small chain) oxidoreductase protein	Ribonucleoside-diphosphate reductase 1 beta chain	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	conserved gene ribonucleoside-diphosphate reductase, beta subunit	Similar to ribonucleoside-diphosphate reductase, beta subunit hypothetical protein	Ribonucleoside-diphosphate reductase, beta chain	Ribonucleoside-diphosphate reductase beta chain	Ribonucleoside-diphosphate reductase system	ribonucleotide diphosphate reductase beta subunit	Ribonucleoside-diphosphate reductase, beta subunit	Ribonucleoside-diphosphate reductase beta chain	IPR000358: Ribonucleotide reductase ribonucleoside-diphosphate reductase 1, beta subunit	Ribonucleotide reductase, beta subunit	similar to Salmonella typhi CT18 ribonucleoside-diphosphate reductase 1 beta chain ribonucleoside-diphosphate reductase 1 beta chain	Similar to Nitrosomonas europaea ribonucleotide reductase NrdB or NE2422 SWALL:Q82SC2 (EMBL:BX321864) (382 aa) fasta scores: E(): 3e-85, 59.71% id in 350 aa, and to Pseudomonas aeruginosa ribonucleoside reductase, small chain NrdB or PA1155 SWALL:Q9I4I2 (EMBL:AE004545) (415 aa) fasta scores: E(): 1.4e-82, 58.26% id in 345 aa, and to Helicobacter pylori ribonucleoside-diphosphate reductase beta chain NrdB or HP0364 SWALL:RIR2_HELPY (SWALL:P55983) (341 aa) fasta scores: E(): 1.6e-24, 30.9% id in 343 aa.  Note: Possible alternative start at codon 4 putative ibonucleoside reductase small subunit	Putative uncharacterized protein gbs0836	identified by match to PFAM protein family HMM PF00268 ribonucleoside-diphosphate reductase 2, beta subunit	Ribonucleoside-diphosphate reductase 1 beta chain	Ribonucleoside-diphosphate reductase beta chain	best blastp match gb|AAK34203.1| (AE006575) ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes M1 GAS] ribonucleotide diphosphate reductase small subunit	Similar to rc||nrdB sp|O84835|RIR2_CHLTR sp|Q9PL92|RIR2_CHLMU; Ortholog to ERGA_CDS_03290 Ribonucleoside-diphosphate reductase beta chain	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme ribonucleoside-diphosphate reductase, beta subunit	
RICPR00490	Ribonucleoside-diphosphate reductase	Residues 1 to 714 of 714 are 98 pct identical to residues 1 to 714 of a 714 aa protein from Escherichia coli K12 ref: NP_417161.1 ribonucleoside-diphosphate reductase 2, alpha subunit	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase alpha chain	ribonucleoside-diphosphate reductase alpha chain	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	identified by similarity to EGAD:37757; match to protein family HMM PF00317; match to protein family HMM PF02867 ribonucleoside-diphosphate reductase 2, alpha subunit	ribonucleotide reductase alpha subunit	Ribonucleoside-diphosphate reductase	Ribonuceloside diphosphate reductase major subunit	Ribonucleoside-diphosphate reductase alpha subunit	Ribonucleoside-diphosphate reductase	InterProMatches:IPR000788; Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748), Cellular Component: ribonucleoside-diphosphate reductase complex (GO:0005971), Biological Process: DNA replication (GO:0006260) ribonucleoside-diphosphate reductase (major subunit)	ribonucleotide reductase large subunit ribonucleoside-diphosphate reductase alpha chain	Ribonucleoside-diphosphate reductase	IPR000788: Ribonucleotide reductase large subunit ribonucleoside diphosphate reductase 2, alpha subunit	Ribonucleotide reductase, alpha subunit	similar to Salmonella typhi CT18 ribonucleoside-diphosphate reductase 2 alpha chain ribonucleoside-diphosphate reductase 2 alpha chain	similar to BRA0316, ribonucleoside-diphosphate reductase, alpha subunit NrdE, ribonucleoside-diphosphate reductase, alpha subunit	Ribonucleoside-diphosphate reductase	Ribonucleoside-diphosphate reductase	ribonuceloside diphosphate reductase major subunit	identified by match to PFAM protein family HMM PF00317 ribonucleoside-diphosphate reductase 2, alpha subunit	Ribonucleoside-diphosphate reductase	Ortholog of S. aureus MRSA252 (BX571856) SAR0785 ribonucleoside-diphosphate reductase alpha chain	ribonuceloside diphosphate reductase major subunit	
RICPR00491	Ferredoxin--NADP reductase	TrxB	Ferredoxin--NADP reductase	Ferredoxin--NADP reductase	Thioredoxin reductase	thioredoxin reductase	similar to thioredoxin reductase; Biological Process: electron transport (GO:0006118), Molecular Function: disulfide oxidoreductase activity (GO:0015036) FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumC	thioredoxin reductase	COG0492 Thioredoxin reductase thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Thioredoxin reductase	Ferredoxin--NADP reductase	identified by match to PFAM protein family HMM PF00070 pyridine nucleotide-disulphide oxidoreductase family protein	Ferredoxin--NADP reductase	best blastp match gb|AAK33778.1| (AE006535) putative thioredoxin reductase [Streptococcus pyogenes M1 GAS] putative thioredoxin reductase	thioredoxin reductase	identified by match to protein family HMM PF00070 pyridine nucleotide-disulfide oxidoreductase family protein	COG0492 TrxB thioredoxin reductase similar to NP_360274.1; go_process: 0006118 thioredoxin reductase	Thioredoxin reductase	thioredoxin reductase	Thioredoxin reductase	identified by match to protein family HMM PF00070; match to protein family HMM PF07992 pyridine nucleotide-disulfide oxidoreductase	thioredoxin-disulfide reductase	thioredoxin-disulfide reductase	Thioredoxin reductase	identified by match to protein family HMM PF00070; match to protein family HMM PF07992 pyridine nucleotide-disulphide oxidoreductase family protein	thioredoxin reductase	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	
RICPR00492	Bifunctional protein folD	Methylenetetrahydrofolate dehydrogenase	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	Bifunctional protein folD	identified by similarity to EGAD:45761; match to protein family HMM PF00763; match to protein family HMM PF02882 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	Methenyltetrahydrofolate cyclohydrolase Methylenetetrahydrofolate dehydrogenase (NADP+)	FolD bifunctional protein	identified by similarity to SP:P54382; match to protein family HMM PF00763; match to protein family HMM PF02882 folD bifunctional protein	Bifunctional protein folD	methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase	Methylenetetrahydrofolate dehydrogenase	Bifunctional protein folD	Bifunctional protein folD	InterProMatches:IPR000672, IPR000672; Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthesis (GO:0009396), Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthesis (GO:0009396) methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase	FolD methylenetetrahydrofolate dehydrogenase (NADP+)	Bifunctional protein folD	Bifunctional protein folD	bifunctional IPR000672: Tetrahydrofolate dehydrogenase/cyclohydrolase 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	similar to Salmonella typhi CT18 FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase FolD bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase	Bifunctional protein folD	similar to BRA0781, FolD bifunctional protein FolD bifunctional protein	Bifunctional protein folD	Bifunctional protein folD	FolD bifunctional protein	FolD bifunctional protein	
RICPR00493	Putative uncharacterized protein RP516	pseudo	Similar to putative transferase YrdA of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Probable carbonic anhydrase, family 3	Putative uncharacterized protein	identified by match to protein family HMM PF00132 transferase, hexapeptide repeat family	conserved protein conserved protein YtoA	conserved hypothetical protein	Ferripyochelin-binding protein	Transferase	Putative transferase	Hypothetical protein	Similar to rp||RP516 sp|P45770|YRDA_ECOLI; Ortholog to ERGA_CDS_08600 Conserved hypothetical protein	universally conserved protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative transferase	conserved hypothetical protein similar to ZP_00053362.1 hypothetical protein	O-acetyltransferase (cell wall biosynthesis)	Similar to Bacteroides thetaiotaomicron acetyltransferase BT2744 SWALL:Q8A459 (EMBL:AE016937) (170 aa) fasta scores: E(): 5.4e-58, 91.76% id in 170 aa, and to Porphyromonas gingivalis W83 hexapeptide transferase family protein PG1211 SWALL:AAQ66301 (EMBL:AE017176) (192 aa) fasta scores: E(): 2.6e-46, 72.94% id in 170 aa putative hexapeptide repeat protein	Anhydrase, family 3 protein	Similar to Q8EKP8 Carbonic anhydrase,family 3 from Shewanella oneidensis (182 aa). FASTA: opt: 639 Z-score: 840.8 E(): 6.1e-39 Smith-Waterman score: 639; 50.000 identity in 178 aa overlap ORF ftt0269 carbonic anhydrase, family 3	transferase; possible acetyltransferase/acyltransferase	bacterial transferase hexapeptide repeat protein	transferase hexapeptide repeat	similar to Carbonic anhydrases/acetyltransferases isoleucine patch superfamily	Carbonic anhydrases/Acetyltransferase, isoleucine patch superfamily	Best Blastp Hit: pir||E81176 conserved hypothetical protein NMB0625 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225855|gb|AAF41050.1| (AE002418) conserved hypothetical protein [Neisseria meningitidis MC58] COG0663 Carbonic anhydrases/acetyltransferases conserved hypothetical protein	
RICPR00494	PROBABLE SIGMA(54) MODULATION PROTEIN	similar to BR0160, ribosomal subunit interface protein YfiA, ribosomal subunit interface protein	COG1544 ribosome-associated protein Y	Probable sigma(54) modulation protein	Sigma 54 modulation protein/ribosomal protein S30EA	Shows similarity to sigma54 modulation proteins also. Ribosomal subunit interface protein Y	SSU ribosomal protein S30P , sigma 54 modulation protein	sigma 54 modulation protein/ribosomal protein S30EA	Putative sigma(54) modulation protein	sigma 54 modulation protein/ribosomal protein S30EA TIGRFAM: ribosomal subunit interface protein: (4e-19) PFAM: sigma 54 modulation protein/ribosomal protein S30EA: (5.5e-27) KEGG: sil:SPO0078 ribosomal subunit interface protein, putative, ev=2e-87, 83% identity	sigma 54 modulation protein/ribosomal protein S30EA	sigma 54 modulation protein/ribosomal protein S30EA	ribosomal subunit interface protein	sigma 54 modulation protein/ribosomal protein S30EA TIGRFAM: ribosomal subunit interface protein PFAM: sigma 54 modulation protein/ribosomal protein S30EA KEGG: rsp:RSP_1157 ribosomal subunit interface protein Y	sigma-54 modulation protein, putative	sigma 54 modulation protein/ribosomal protein S30EA TIGRFAM: ribosomal subunit interface protein PFAM: sigma 54 modulation protein/ribosomal protein S30EA KEGG: rpc:RPC_0414 sigma 54 modulation protein/ribosomal protein S30EA	sigma 54 modulation protein/ribosomal protein S30EA TIGRFAM: ribosomal subunit interface protein PFAM: sigma 54 modulation protein/ribosomal protein S30EA KEGG: rsp:RSP_1157 ribosomal subunit interface protein Y	Putative sigma (54) modulation protein	Putative sigma (54) modulation protein	Putative sigma(54) modulation protein	Ribosomal subunit interface protein	sigma 54 modulation protein/ribosomal protein S30EA	Sigma 54 modulation protein/ribosomal protein S30EA	Probable sigma(54) modulation protein	Putative sigma(54) modulation protein	Sigma 54 modulation protein/ribosomal protein S30EA	Sigma 54 modulation protein/ribosomal protein S30EA	Putative sigma(54) modulation protein	Probable sigma(54) modulation protein	
RICPR00495	ATP-dependent Clp protease proteolytic subunit	ATP-dependent clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 1	Residues 40 to 246 of 246 are 100 pct identical to residues 1 to 207 of a 207 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286179.1 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5	ATP-dependent Clp protease proteolytic subunit 2	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	conserved gene ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	identified by similarity to EGAD:109994; match to protein family HMM PF00574; match to protein family HMM TIGR00493 ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493 ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease, proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	identified by similarity to SP:P19245; match to protein family HMM PF00574; match to protein family HMM TIGR00493 ATP-dependent Clp protease, proteolytic subunit ClpP	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit 1	Mb2488c, clpP1, len: 200 aa. Equivalent to Rv2461c, len: 200 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 200 aa overlap). Probable clpP1, ATP-dependent clp protease proteolytic subunit 1 (EC 3.4.21.92), equivalent to Q9CBY3|CLP1_MYCLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT from Mycobacterium leprae (224 aa), FASTA scores: opt: 1226, E(): 1.3e-71, (95.0% identity in 200 aa overlap). Also highly similar to others e.g. Q9F315|CLPP1 from Streptomyces coelicolor (219 aa), FASTA scores: opt: 713, E(): 9.3e-39, (61.75% identity in 183 aa overlap); P80244|CLPP_BACSU from Bacillus subtilis (197 aa), FASTA scores: opt: 658, E(): 2.8e-35, (54% identity in 187 aa overlap); Q9WZF9|CLPP_THEMA|TM0695 from Thermotoga maritima (203 aa), FASTA scores: opt: 653, E(): 6.1e-35, (55.25% identity in 172 aa overlap); etc. Also similar to downstream ORF Rv2460c|MTV008.16c|clpP2 (214 aa), FASTA score: (48.3% identity in 172 aa overlap).  BELONGS TO PEPTIDASE FAMILY S14, ALSO KNOWN AS CLPP FAMILY. Note that previously known as clp. PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1 (ENDOPEPTIDASE CLP)	InterProMatches:IPR001907; required for competence development, motility, degradative enzyme synthesis, growth at high temperature and sporulation, Biological Process: proteolysis and peptidolysis (GO:0006508), Molecular Function: endopeptidase Clp activity (GO:0008462) ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein)	ATP-dependent Clp protease proteolytic subunit	ATP-dependent Clp protease proteolytic subunit	
RICPR00496	30S ribosomal protein S1	30S ribosomal protein S1	Residues 1 to 557 of 557 are 100 pct identical to residues 1 to 557 of a 557 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286786.1 30S ribosomal subunit protein S1	30S ribosomal protein S1	30S ribosomal protein S1	Ribosomal protein S1:S1 RNA binding domain	RpsA protein	Probable 30s ribosomal subunit protein s1	30S ribosomal protein S1	30S ribosomal protein S1	conserved gene 30S ribosomal protein S1	30S ribosomal protein S1	Ribosomal protein S1	identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717 ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	30S ribosomal protein S1	identified by similarity to SP:P02349; match to protein family HMM PF00575 ribosomal protein S1	RpsA	Ribosomal protein S1	30S ribosomal protein S1	Mb1656, rpsA, len: 481 aa. Equivalent to Rv1630, len: 481 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 481 aa overlap). Probable rpsA, ribosomal protein S1. FASTA best: RS1_MYCLE|P46836 30s ribosomal protein S1 from Mycobacterium leprae (482 aa), opt: 2655, E(): 0, (87.2% identity in 483 aa overlap). PROBABLE RIBOSOMAL PROTEIN S1 RPSA	30S ribosomal protein S1	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 30S ribosomal protein S1	30S ribosomal protein S1	IPR000110: Ribosomal protein S1; IPR003029: RNA binding S1 30S ribosomal subunit protein S1	Ribosomal protein S1	similar to Salmonella typhi CT18 30S ribosomal protein S1 30S ribosomal protein S1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30s ribosomal protein S1 RpsA SWALL:RS1_ECOLI (SWALL:P02349) (557 aa) fasta scores: E(): 1.7e-83, 45.16% id in 527 aa and to Chlorobium tepidum ribosomal protein S1 RpsA SWALL:AAM71534 (EMBL:AE012807) (550 aa) fasta scores: E(): 9.4e-89, 45.64% id in 517 aa 30s ribosomal protein S1	
RICPR00497	Cytidylate kinase	Cytidylate kinase	Residues 1 to 227 of 227 are 99 pct identical to residues 1 to 227 of a 227 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286785.1 cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cmk protein	Cytidylate kinase	cytidine monophosphate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	conserved gene cytidylate kinase	Cytidylate kinase	Cytidylate kinase	identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017 cytidylate kinase	Cytidylate kinase	Cytidylate kinase	identified by similarity to SP:P43892; match to protein family HMM PF02224; match to protein family HMM TIGR00017 cytidylate kinase	Cytidylate kinase	cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Cytidylate kinase	Mb1739, cmk, len: 230 aa. Equivalent to Rv1712, len: 230 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 230 aa overlap). Probable cmk, cytidylate kinase (EC 2.7.4.14), highly similar to many e.g. KCY_ECOLI|P23863 cytidylate kinase from Escherichia coli (227 aa), FASTA scores: opt: 534, E (): 0, (40.3% identity in 221 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). Equivalent to Z95117|MLCB1351_2 from Mycobacterium leprae (223 aa) (73.5% identity in 226 aa overlap). BELONGS TO THE CYTIDYLATE KINASE FAMILY, SUBFAMILY 1. Probable Cytidylate kinase cmk (CMP kinase) (Cytidine monophosphate kinase) (CK)	
RICPR00498	DNA-binding protein HU-like	Integration host factor beta-subunit	DNA-binding protein HU-like	Integration host factor beta-subunit	Integration host factor beta-subunit	Integration host factor beta-subunit	hypothetical protein	Integration host factor beta-subunit	
RICPR00499	PROTEASE IV	similar to putative signal peptide peptidases hypothetical protein	conserved gene signal peptide peptidase	similar to putative signal peptide peptidases hypothetical protein	Serine protease	Periplasmic serine protease	identified by similarity to GP:1655731; match to protein family HMM PF01343; match to protein family HMM TIGR00706 signal peptide peptidase SppA, 36K type	Proteinase IV protein	Putative uncharacterized protein	similar to BR0154, signal peptide peptidase SppA SppA, signal peptide peptidase SppA	Putative PROTEASE IV	signal peptide peptidase SppA (protease IV)	Similar to rp||sppA rc||sppA sp|Q55682|Y021_SYNY3; Ortholog to ERGA_CDS_06350 Putative Protease IV	COG0616 SppA periplasmic serine proteases (ClpP class) similar to NP_104359.1 protease IV	Protease IV	Similar to rp||sppA rc||sppA sp|Q55682|Y021_SYNY3; Ortholog to ERWE_CDS_06440 Putative Protease IV	Signal peptide peptidase SppA	peptidase S49, SppA	Peptidase S49, SppA	Peptidase S49, SppA	Clp protease:Peptidase U7:Signal peptide peptidase, SppA 36 kDa type	Signal peptide peptidase SppA, 67K type	signal peptide peptidase SppA, 36K type identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706	Peptidase S49, SppA	signal peptide peptidase SppA, 36K type identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706	signal peptide peptidase SppA, 36K type identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706	signal peptide peptidase SppA, 36K type	signal peptide peptidase SppA, 36K type	Peptidase S49, SppA	
RICPR00500	Transcription termination factor rho	Transcription termination factor rho	Rho	Residues 25 to 443 of 443 are 100 pct identical to residues 1 to 419 of a 419 aa protein from Escherichia coli O157:H7 ref: NP_312743.1 transcription termination factor Rho	Transcription Termination Factor	Transcription termination factor	Rho; Transcription termination factor	Transcription termination factor Rho	Rho protein	Probable transcription termination factor rho (Helicase) protein	Transcription termination factor	transcription termination factor Rho	conserved gene transcription termination factor Rho	transcription termination factor Rho	Transcription terminator factor Rho	identified by similarity to EGAD:15963; match to protein family HMM PF00006; match to protein family HMM TIGR00767 transcription termination factor Rho	identified by similarity to SP:P03002; match to protein family HMM PF00006; match to protein family HMM PF07497; match to protein family HMM PF07498; match to protein family HMM TIGR00767 transcription termination factor Rho	Transcription termination factor rho	Transcription termination factor Rho	Transcription termination factor	identified by match to protein family HMM PF00006; match to protein family HMM TIGR00767 transcription termination factor Rho	Transcription termination factor Rho	InterProMatches:IPR004665; Molecular Function: transcription termination factor activity (GO:0003715), Molecular Function: ATP binding (GO:0005524), Biological Process: transcription termination (GO:0006353) transcriptional terminator Rho	transcriptional termination factor Rho	Transcription termination factor Rho	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark transcription termination factor Rho	Transcription termination factor Rho	IPR001063: Ribosomal protein L22/L17 transcription termination factor Rho; polarity suppressor	Transcription termination factor, rho	
RICPR00501	Putative uncharacterized protein RP527	conserved hypothetical protein	Putative methyltransferase	Methyltransferase	Methyltransferase type 12	Methyltransferase type 12 PFAM: Methyltransferase type 11; Methyltransferase type 12 KEGG: mpa:MAP1004 hypothetical protein	Methyltransferase type 12	Putative uncharacterized protein	Putative methyltransferase	KEGG: gvi:glr1180 hypothetical protein Methylase involved in ubiquinone/menaquinone biosynthesis-like protein	Putative methyltransferase	Putative methyltransferase	methyltransferase	Putative methyltransferase	Methyltransferase type 11	Phycocyanin operon protein W	Putative uncharacterized protein	Methyltransferase type 11	Tlr1948 protein	Methyltransferase	Putative methyltransferase	
RICPR00502	SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ	Single-stranded-DNA-specific exonuclease	Single-stranded DNA exonuclease	Residues 1 to 577 of 577 are 99 pct identical to residues 1 to 577 of a 577 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289461.1 ssDNA exonuclease, 5' --> 3' specific	SsDNA Exonuclease	Single-stranded-DNA-specific exonuclease	RecJ: single-stranded-DNA-specific exonuclease	Similar to single-strand DNA-specific exonuclease	RecJ protein	Probable single-stranded-dna-specific exonuclease protein	Single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	conserved gene single stranded DNA specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	Single-strand DNA-specific exonuclease RecJ	identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease RecJ	single-stranded DNA-specific exonuclease	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Exodeoxyribonuclease VII	single strand DNA-specific exonuclease	Single-stranded DNA exonuclease	Single-strand DNA-specific exonuclease	Single-stranded DNA-specific exonuclease	identified by similarity to OMNI:HP0348; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 single-stranded-DNA-specific exonuclease RecJ	Single-stranded-DNA-specific exonuclease protein	Mg2+-dependent ssDNA specific 5'-3' exonuclease; Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: 5'-3' exonuclease activity (GO:0008409) RecJ exonuclease	single-strand DNA-specific exonuclease	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark single-stranded-DNA-specific exonuclease	
RICPR00503	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Residues 1 to 360 of 360 are 100 pct identical to residues 1 to 360 of a 360 aa protein from Escherichia coli O157:H7 ref: NP_309743.1 peptide chain release factor RF-1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1 (RF-1), peptide termination factor	Peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	conserved gene peptide chain release factor 1 (RF-1)	peptide chain release factor 1	Peptide chain release factor 1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	Peptide chain release factor 1	RF-1 Bacterial Peptide Chain Release Factor 1	peptide chain release factor RF-1	identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	Peptide chain release factor 1	peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	Peptide chain release factor 1	identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019 peptide chain release factor 1	
RICPR00504	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AceF protein	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase	Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	Dihydrolipoamide acyltransferase E2 component	Similar to Prokaryotic and, in parts to, Eukaryotic components of the pyruvate dehydrogenase complex: Bacillus stearothermophilus dihydrolipoamide acetyltransferase PdhC SWALL:ODP2_BACST (SWALL:P11961) (427 aa) fasta scores: E(): 3.1e-29, 30.29% id in 439 aa and Rattus norvegicus dihydrolipoamide acetyltransferase DlaT SWALL:ODP2_RAT (SWALL:P08461) (555 aa) fasta scores: E(): 3.3e-47, 38.85% id in 435 aa dihydrolipoamide acetyltransferase	similar to BR1127, pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase AceF, pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase	Dihydrolipoamide acetyltransferase	Similar to rc||pdhC sp|Q9ZD20|ODP2_RICPR; Ortholog to ERGA_CDS_00580 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	COG0508 pyruvate dehydrogenase E2 component	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component or related enzyme	Similar to rc||pdhC sp|Q9ZD20|ODP2_RICPR; Ortholog to ERWE_CDS_00610 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex	Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	dihydrolipoamide acetyltransferase, long form	Dihydrolipoamide acetyltransferase, long form	Biotin/lipoyl attachment:Antifreeze protein, type I:Catalytic domain of components of various dehydrogenase complexes:2-oxo a...	ACETYL-COA + DIHYDROLIPOAMIDE = COA + S- ACETYLDIHYDROLIPOAMIDE. THE E2 COMPONENT CONTAINS ONE COVALENTLY-BOUND LIPOYL COFACTOR (BY SIMILARITY). Citation: Cabanes,D., Boistard,P., Batut,J., (2000) Mol. Plant Microbe Interact. 13:483-493 Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex	Dihydrolipoamide acetyltransferase, long form	putative 2-oxo acid dehydrogenase, acyltransferase identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817	Dehydrogenase complex E2 component, dihydrolipamide acetyltransferase	pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349	Biotin/lipoyl attachment	dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817	2-oxo acid dehydrogenase, acyltransferase, putative identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817	Dihydrolipoamide acetyltransferase, long form	Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	pyruvate dehydrogenase E2 dihydrolipoamide S-acetyltransferase component EC 2.3.1.12	
RICPR00505	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Residues 1 to 144 of 144 are 99 pct identical to residues 37 to 180 of a 180 aa protein from Escherichia coli O157:H7 ref: NP_310452.1 protein chain initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	ATT start codon Translation initiation factor IF-3	conserved gene translational initiation factor IF-3	ATT start codon Translation initiation factor IF-3	Translation initiation factor IF-3	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	IF-3 Translation Initiation Factor 3	translation initiation factor IF-3	identified by similarity to SP:O33567 translation initiation factor IF-3	Translation initiation factor IF-3	translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	Translation initiation factor IF-3	identified by similarity to SP:P55872; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 translation initiation factor IF-3	Translation initiation factor IF-3	
RICPR00506	Uncharacterized protein RP532	Putative membrane protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	

RICPR00507	BIOTIN-PROTEIN LIGASE	Biotin-protein ligase birA	Residues 1 to 321 of 321 are 99 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290608.1 biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor	biotin-protein ligase	Similar to biotin ligase	Bifunctional protein	biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor	conserved gene biotin operon repressor and biotin [acetyl CoA carboxylase] synthetase BirA bifunctional protein	biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor	identified by similarity to EGAD:30996; match to protein family HMM PF01317; match to protein family HMM PF03099; match to protein family HMM TIGR00121 birA bifunctional protein	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 biotin--acetyl-CoA-carboxylase ligase	Biotin ligase	identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121 biotin--acetyl-CoA-carboxylase ligase	Biotin--(Acetyl-CoA carboxylase) synthetase protein	BirA bifunctional protein	Mb3307c, birA, len: 266 aa. Equivalent to Rv3279c, len: 266 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 266 aa overlap). Possible birA, bifunctional protein: biotin operon repressor and biotin--[acetyl-CoA-carboxylase] synthetase (EC 6.3.4.15), equivalent to Q9CCL3|BIRA|ML0732 BIOTIN APO-PROTEIN LIGASE from Mycobacterium leprae (274 aa), FASTA scores: opt: 1189, E(): 2.3e-66, (71.2% identity in 271 aa overlap).  But as it lacks a BirA h-t-h domain at N-terminus, may simply be biotin apo-protein ligase. Also similar to others e.g. Q9CNX6|BIRA|PM0296 from Pasteurella multocida (312 aa), FASTA scores: opt: 347, E(): 2.7e-14, (32.95% identity in 270 aa overlap); Q9HWC0|BIRA|PA4280 from Pseudomonas aeruginosa (312 aa), FASTA scores: opt: 335, E(): 1.5e-13, (34.2% identity in 272 aa overlap); Q9A6Z0|CC1936 from Caulobacter crescentus (250 aa), FASTA scores: opt: 332, E(): 1.9e-13, (33.6% identity in 238 aa overlap); P06709|BIRA_ECOLI (321 aa), FASTA scores: opt: 314, E(): 3.1e-12, (34.15% identity in 249 aa overlap); etc. SIMILAR WITH OTHER BACTERIAL BIRA AND WITH EUKARYOTIC BIOTIN APO-PROTEIN LIGASE. POSSIBLE BIFUNCTIONAL PROTEIN BIRA: BIOTIN OPERON REPRESSOR + BIOTIN--[ACETYL-COA-CARBOXYLASE] SYNTHETASE (BIOTIN--PROTEIN LIGASE)	InterProMatches:IPR004409, IPR004408; negative regulation of the biotin operon (bioWAFDBI), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcriptional repressor activity (GO:0016564), Molecular Function: biotin-[acetyl-CoA-carboxylase] ligase activity (GO:0004077), Biological Process: protein transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase	bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/biotin operon transcriptional repressor (BirA family)	Biotin-(acetyl-CoA carboxylase) ligase	similar to Salmonella typhi CT18 bifunctional protein: biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase bifunctional protein: biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase	similar to BR0816, biotin--acetyl-CoA-carboxylase ligase biotin--acetyl-CoA-carboxylase ligase	Biotin-protein ligase birA	truncated hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1467 BirA bifunctional protein [includes: biotin operon repressor; biotin--[acetyl-CoA-carboxylase] synthetase	hypothetical protein, similar to bifunctional biotin ligase/biotin operon repressor	Similar to rc||birA; Ortholog to ERGA_CDS_02520 Biotin-protein ligase	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121 birA bifunctional protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative biotin--[acetyl-CoA-carboxylase] synthetase	COG0340 BirA biotin-(acetyl-CoA carboxylase ligase) biotin-(acetyl-CoA carboxylase)	
RICPR00508	Putative uncharacterized protein RP534	Putative esterase of the alpha/beta hydrolase superfamily protein	
RICPR00509	Superoxide dismutase	Residues 1 to 193 of 193 are 100 pct identical to residues 1 to 193 of a 193 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288092.1 superoxide dismutase, iron	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	superoxide dismutase, iron	conserved gene superoxide dismutase	superoxide dismutase, iron	superoxide dismutase	identified by similarity to SP:P09157 superoxide dismutase, Fe	Superoxide dismutase	identified by similarity to SP:P09157; match to protein family HMM PF00081; match to protein family HMM PF02777 superoxide dismutase, Fe	Superoxide dismutase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark iron superoxide dismutase	IPR001189: Manganese and iron superoxide dismutase superoxide dismutase, iron	Superoxide dismutase, SodA	similar to Salmonella typhi CT18 superoxide dismutase superoxide dismutase	Superoxide dismutase	similar to BR0566, superoxide dismutase, Fe-Mn family Fe-Mn superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Superoxide dismutase	Putative superoxide dismutase	Similar to sp|P18655|SODF_SYNP7 sp|P77968|SODF_SYNY3 sp|P31108|SODF_LEGPN sp|P40726|SODF_SALTY; Ortholog to ERGA_CDS_05420 Superoxide dismutase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme superoxide dismutase [Fe]	COG0605 SodA superoxide dismutase; go_process: 0006801 Fe superoxide dismutase	Superoxide dismutase	COG0605 superoxide dismutase	
RICPR00510	FOLYLPOLYGLUTAMATE SYNTHASE	Folylpolyglutamate synthase	Residues 1 to 422 of 422 are 99 pct identical to residues 1 to 422 of a 422 aa protein from Escherichia coli K12 ref: NP_416818.1 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase	Cytoplasmic peptidoglycan synthetases, C-terminal	Folylpolyglutamate synthase	FolC protein	Probable bifunctional protein: folylpolyglutamate synthase and dihydrofolate synthase	FolC bifunctional protein	Similar to dihydrofolate:folylpolyglutamate synthetase FolC hypothetical protein	Folylpolyglutamate synthase	identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499 folylpolyglutamate synthase/dihydrofolate synthase	folylpolyglutamate synthase	identified by match to protein family HMM PF01225; match to protein family HMM TIGR01499 folC bifunctional protein	Folylpolyglutamate synthase/dihydrofolate synthase	Folylpolyglutamate synthase	Folylpolyglutamate synthase	FolC	Folylpolyglutamate synthase/dihydrofolate syntase bifunctional protein	Folylpolyglutamate synthase	Mb2474c, folC, len: 487 aa. Equivalent to Rv2447c, len: 487 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 487 aa overlap). Probable folC, folylpolyglutamate synthase (EC 6.3.2.17), equivalent to Q9CBY8|FOLC|ML1471 from Mycobacterium leprae (485 aa), FASTA scores: opt: 2425, E(): 2.2e-134, (78.7% identity in 483 aa overlap). Also highly similar to others e.g.  Q9L1G4|FPGS|O08416|Y13070 from Streptomyces coelicolor (444 aa), FASTA scores: opt: 774, E(): 6.3e-38, (53.9% identity in 462 aa overlap); P15925|FOLC_LACCA|FGS from Lactobacillus casei (428 aa), FASTA scores: opt: 631, E(): 1.4e-29, (34.55% identity in 437 aa overlap); Q05865|FOLC_BACSU from Bacillus subtilis (430 aa), FASTA scores: opt: 421, E(): 2.6e-17, (32.9% identity in 383 aa overlap); etc. Contains PS01012 Folylpolyglutamate synthase signature 2. BELONGS TO THE FOLYLPOLYGLUTAMATE SYNTHASE FAMILY. PROBABLE FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC (FOLYLPOLY-GAMMA-GLUTAMATE SYNTHETASE) (FPGS)	InterProMatches:IPR001645; Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthesis (GO:0009396) folyl-polyglutamate synthetase	folylpolyglutamate synthase	Folylpolyglutamate synthase	FolC COG0285 Folylpolyglutamate synthase folylpolyglutamate synthase	Folylpolyglutamate synthase	similar to Salmonella typhi CT18 folylpolyglutamate synthase folylpolyglutamate synthase	similar to BR2106, FolC bifunctional protein FolC, FolC bifunctional protein	Putative uncharacterized protein gbs1184	Folylpolyglutamate synthase	

RICPR00512	Uncharacterized protein RP538	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Delta-aminolevulinic acid dehydratase	Putative uncharacterized protein	
RICPR00511	NADH-quinone oxidoreductase subunit N	NADH dehydrogenase I N subunit	Residues 61 to 485 of 485 are 99 pct identical to residues 1 to 425 of a 425 aa protein from Escherichia coli O157:H7 ref: NP_311187.1 NADH dehydrogenase I chain N	NADH-quinone oxidoreductase subunit N	Probable transmembrane nadh dehydrogenaseI(Chain n) oxidoreductase protein	NADH dehydrogenase I chain N	conserved gene NADH dehydrogenase I, N subunit	NADH dehydrogenase I chain N	NADH dehydrogenase subunit 2	identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770 NADH dehydrogenase I, N subunit	NADH-ubiquinone oxidoreductase, chain N	NADH-ubiquinone oxidoreductase, NQO14 subunit	NAD(P)H-quinone oxidoreductase subunit 2	identified by similarity to SP:P33608; match to protein family HMM PF00361 NADH-quinone oxidoreductase, N subunit	NuoN	NADH-ubiquinone oxidoreductase chain N protein	NADH-quinone oxidoreductase subunit N	Mb3182, nuoN, len: 531 aa. Equivalent to Rv3158, len: 531 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 531 aa overlap). Probable nuoN, integral membrane NADH dehydrogenase I, chain N (EC 1.6.5.3), similar to others e.g. Q9XAR7|SC10A7.08c from Streptomyces coelicolor (552 aa), FASTA scores: opt: 1493, E(): 1.1e-81, (56.7% identity in 543 aa overlap); Q9PGI2|XF0318 from Xylella fastidiosa (485 aa), FASTA scores: opt: 942, E(): 7.4e-49, (39.6% identity in 379 aa overlap); CAB51628|NUON2 from Rhizobium meliloti (Sinorhizobium meliloti) (479 aa), FASTA scores: opt: 934, E(): 2.2e-48, (35.5% identity in 479 aa overlap); etc. But also similarity with NADH-PLASTOQUINONE OXIDOREDUCTASES CHAIN 4L (EC 1.6.5.3) (CATALYTIC ACTIVITY: NADH + PLASTOQUINONE = NAD(+) + PLASTOQUINOL) e.g.  P29801|NU2C_SYNP7|NDHB from Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) (521 aa), FASTA scores: opt: 921, E(): 1.4e-47, (40.25% identity in 395 aa overlap).  BELONGS TO THE COMPLEX I SUBUNIT 2 FAMILY. PROBABLE NADH DEHYDROGENASE I (CHAIN N) NUON (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN N)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO14 subunit	NADH-quinone oxidoreductase subunit 14	NADH:ubiquinone oxidoreductase chain N	NADH-quinone oxidoreductase subunit N	similar to BR0815, NADH dehydrogenase I, N subunit NuoN, NADH dehydrogenase I, N subunit	NADH-ubiquinone oxidoreductase NQO14 subunit	NADH dehydrogenase I, N subunit	NADH oxidoreductase I	NADH dehydrogenase chain N	Similar to sp|P26846|NU2M_MARPO sp|P29926|NQOE_PARDE sp|P48903|NU2M_CHOCR sp|P50973|NUON_RHOCA sp|P56911|NUN2_RHIME rp||nuoN1 rc||nuoN1; Ortholog to ERGA_CDS_04880 NADH-ubiquinone oxidoreductase chain N	
RICPR00513	DELTA-AMINOLEVULINIC ACID DEHYDRATASE	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	identified by similarity to SP:Q59643; match to protein family HMM PF00490 porphobilinogen synthase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Similar to Chlorobium vibrioforme delta-aminolevulinic acid dehydratase HemB SWALL:HEM2_CHLVI (SWALL:Q59334) (328 aa) fasta scores: E(): 4.6e-58, 48.08% id in 314 aa, and to Chlamydia pneumoniae delta-aminolevulinic acid dehydratase cpn0744 or cp0001 SWALL:HEM2_CHLPN (SWALL:Q9Z7G1) (332 aa) fasta scores: E(): 6.6e-102, 76.07% id in 326 aa putative delta-aminolevulinic acid dehydratase	similar to BR0757, delta-aminolevulinic acid dehydratase HemB, delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Putative delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Similar to rc||hemB rp||hemB sp|P45622|HEM2_BRAJA sp|Q59643|HEM2_PSEAE sp|P42504|HEM2_RHOCA; Ortholog to ERGA_CDS_02720 Delta-aminolevulinic acid dehydratase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme delta-aminolevulinic acid dehydratase (Porphobilinogen synthase)	COG0113 HemB delta-aminolevulinic acid dehydratase delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	COG0113 delta-aminolevulinic acid dehydratase	delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase HemB protein	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase	Delta-aminolevulinic acid dehydratase (EC 4.2.1.24), gene: NE2457	
RICPR00514	Primosomal protein N'	Primosomal protein N'	Residues 25 to 756 of 756 are 99 pct identical to residues 1 to 732 of a 732 aa protein from Escherichia coli K12 ref: NP_418370.1 primosomal protein N'(= factor Y)(putative helicase)	Primosomal protein N'	Primosomal protein n'	Probable priA; primosomal protein N'	Primosomal protein	Probable primosomal protein n'	Primosomal protein N'	Primosomal protein N' (replication factor Y)	conserved gene primosomal protein N'	Primosomal protein N' (replication factor Y)	Primosomal protein N'	identified by similarity to EGAD:98914; match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	Primosomal protein N'	replication factor Y primosomal protein N'	identified by match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	Primosomal protein N`	primosomal replication factor Y	Primosomal protein N'	PriA ,primosomal protein	Primosomal protein N' (Replication factor Y)- superfamily II helicase	identified by similarity to SP:P94461; match to protein family HMM PF00271; match to protein family HMM TIGR00595 primosomal protein N'	PriA	Primosomal protein N'	Putative primosomal protein N'	Mb1437, priA, len: 655 aa. Equivalent to Rv1402, len: 655 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 655 aa overlap). Putative priA, primosomal protein N'. Similar to e.g. PRIA_ECOLI|P17888 primosomal protein N' (replication factor Y) (732 aa), FASTA scores, opt: 386, E(): 1.3e-16, (27.6% identity in 711 aa overlap). Compared to other bacterial priA, it has a very divergent helicase domain. BELONGS TO THE HELICASE FAMILY. PRIA SUBFAMILY. PUTATIVE PRIMOSOMAL PROTEIN N' PRIA (Replication factor Y)	InterProMatches:IPR005259 primosomal replication factor Y (primosomal protein N')	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark primosomal protein N'	
RICPR00515	Probable aromatic acid decarboxylase	Residues 1 to 189 of 189 are 98 pct identical to residues 1 to 189 of a 189 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288885.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Probable 3-octaprenyl-4-hydroxybenzoate carboxy- lyase	UbiX protein	Probable 3-octaprenyl-4-hydroxybenzoate carboxy- lyase protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Belongs to the polyprenyl P-hydroxybenzoate / phenylacrylic acid decarboxylases family. hypothetical protein	conserved gene 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Belongs to the polyprenyl P-hydroxybenzoate / phenylacrylic acid decarboxylases family. hypothetical protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	identified by match to protein family HMM PF02441 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase	similar to Salmonella typhi CT18 putative decarboxylase putative decarboxylase	Weakly similar to the C-terminus of Saccharomyces cerevisiae phenylacrylic acid decarboxylase pad1 or pof1 or ydr538W SWALL:PAD1_YEAST (SWALL:P33751) (242 aa) fasta scores: E(): 5.8e-24, 38.09% id in 189 aa. Also similar to several others for which function has to be fully defined e.g. Bacillus firmus probable aromatic acid decarboxylase SWALL:PAAD_BACFI (SWALL:P94300) (200 aa) fasta scores: E(): 2.3e-27, 44.89% id in 196 aa putative flavoprotein	Phenylacrylic acid decarboxylase	Probable 3-octaprenyl-4-hydroxybenzoate carboxy- lyase	Putative decarboxylase	putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	phenylacrylic acid decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX	ortholog to Escherichia coli bnum: b2311; MultiFun: Metabolism 1.3.6, 1.5.3.11 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	
RICPR00516	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	Residues 1 to 471 of 471 are 100 pct identical to residues 1 to 471 of a 471 aa protein from Escherichia coli K12 ref: NP_418476.1 replicative DNA helicase; part of primosome	Replicative DNA helicase	DnaB; replicative DNA helicase protein	Replicative DNA helicase	DnaB protein	Probable replicative dna helicase protein	Replicative DNA helicase	conserved gene replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase DnaC	identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	replicative DNA helicase	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 replicative DNA helicase	Replicative DNA helicase	DNA polymerase III delta prime subunit	Replicative DNA helicase	Replicative DNA helicase	Replicative DNA helicase	identified by similarity to SP:P37469; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 replicative DNA helicase	Replicative DNA helicase protein	InterProMatches:IPR007692; Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260) replicative DNA helicase	replicative DNA helicase	Replicative DNA helicase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark replicative DNA helicase	

RICPR00518	Uncharacterized RNA pseudouridine synthase RP544	Ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	Pseudouridine synthase	Similar to ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) hypothetical protein	conserved gene pseudouridine synthase	Similar to ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) hypothetical protein	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 pseudouridine synthase RluB	Ribosomal large subunit pseudouridine synthase B	identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 RNA pseudouridylate synthase family protein	Pseudouridine synthase	Uncharacterized RNA pseudouridine synthase Rv1711/MT1751.1	Mb1738, -, len: 254 aa. Equivalent to Rv1711, len: 254 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 254 aa overlap). Conserved hypothetical protein, highly similar to a large family of hypothetical proteins e.g. P37765|YCIL_ECOLI from Escherichia coli (291 aa), FASTA scores: opt: 496, E(): 1.1e-29, (41.6% identity in 250 aa overlap); 9S232|SCI51.08C|AL109848 PUTATIVE PSEUDOURIDINE SYNTHASE from Streptomyces coelicolor (371 aa), FASTA scores: opt: 818, E(): 0, (53.1% identity in 245 aa overlap). Equivalent to O05668|MLCB1351.03C|Z95117 Hypothetical protein from Mycobacterium leprae (256 aa), (80.5% identity in 256 aa overlap). Contains PS01149 Hypothetical yciL/yejD/yjbC family signature. CONSERVED HYPOTHETICAL PROTEIN	InterProMatches:IPR000748; Molecular Function: pseudouridylate synthase activity (GO:0004730) pseudouridine synthase	ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	IPR000748: Pseudouridine synthase, Rsu; IPR002942: RNA-binding S4 putative ribosomal large subunit pseudouridine synthase	similar to Salmonella typhi CT18 putative pseudouridine synthase putative pseudouridine synthase	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase B	Hypothetical RNA pseudouridine synthase JHP1352	identified by match to PFAM protein family HMM PF00849 ribosomal large subunit pseudouridine synthase B	Putative pseudouridine synthase	Ortholog of S. aureus MRSA252 (BX571856) SAR1569 ribosomal large subunit pseudouridine synthase B	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase B	putative pseudouridylate synthase specific to ribosomal small subunit	identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 ribosomal large subunit pseudouridine synthase B	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pe : putative enzyme putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase)	
RICPR00519	Uncharacterized methylase RP545	hypothetical protein	Residues 1 to 198 of 198 are 98 pct identical to residues 1 to 198 of a 198 aa protein from Escherichia coli K12 ref: NP_417922.1 orf, conserved hypothetical protein	N6-adenine-specific methylase	Similar to methyltransferase	YhhF protein	conserved hypothetical protein	Similar to putative methylase YhhF of Escherichia coli	Similar to methyltransferase proteins hypothetical protein	conserved gene N6-adenine specific methylase	Similar to methyltransferase proteins hypothetical protein	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 conserved hypothetical protein TIGR00095	Methyltransferase	methyltransferase, putative	Hypothetical protein SE0823	DNA METHYLASE	N6-adenine-specific methylase	Methylase protein	Adenine-specific DNA methylase	N6-adenine-specific methylase	COG0742 N6-adenine-specific methylase hypothetical protein	Putative uncharacterized protein ywdG	IPR002052: N-6 Adenine-specific DNA methylase; IPR004398: Conserved hypothetical protein 95 putative methyltransferase	N6-adenine-specific methylase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BRA0207, conserved hypothetical protein TIGR00095 conserved hypothetical protein TIGR00095	Putative uncharacterized protein gbs0499	Putative uncharacterized protein	conserved hypothetical protein	
RICPR00520	DNA repair protein radA homolog	DNA repair protein	DNA repair protein radA	Residues 17 to 476 of 476 are 99 pct identical to residues 1 to 460 of a 460 aa protein from Escherichia coli O157:H7 ref: NP_313374.1 probable ATP-dependent protease	DNA repair protein radA homolog	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA	Similar to DNA repair protein RadA hypothetical protein	conserved gene DNA repair protein RadA	Similar to DNA repair protein RadA hypothetical protein	DNA repair protein radA	identified by similarity to EGAD:13219; match to protein family HMM PF03796; match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein RadA	DNA repair protein RadA	identified by match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein radA	DNA repair protein	DNA repair protein radA	RadA protein	DNA repair protein radA	identified by similarity to SP:P37572; match to protein family HMM PF03796; match to protein family HMM TIGR00416 DNA repair protein RadA	DNA repair protein radA	DNA repair protein radA	DNA repair protein radA homolog	Mb3616, radA, len: 480 aa. Equivalent to Rv3585, len: 480 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 480 aa overlap). Probable radA, DNA repair protein, similar to many e.g. Q9X8L5|SCE94.02 from Streptomyces coelicolor (469 aa), FASTA scores: opt: 1607, E(): 3.1e-84, (56.15% identity in 454 aa overlap); Q9JV51|RADA|NMA0992 from Neisseria meningitidis (serogroup A) (459 aa), FASTA scores: opt: 1275, E(): 2.5e-65, (45.0% identity in 458 aa overlap); and Q9K040|RADA|NMB0782 from Neisseria meningitidis (serogroup B) (459 aa), FASTA scores: opt: 1269, E(): 5.4e-65, (44.5% identity in 456 aa overlap); P37572|RADA_BACSU|SMS from Bacillus subtilis (458 aa), FASTA scores: opt: 1204, E(): 2.7e-61, (39.55% identity in 455 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE RADA FAMILY. DNA REPAIR PROTEIN RADA (DNA REPAIR PROTEIN SMS)	InterProMatches:IPR004504; Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) DNA repair protein RadA	
RICPR00521	Uncharacterized protein RP547	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	DNA repair protein RecO	Putative uncharacterized protein	Putative uncharacterized protein	


RICPR00525	Uncharacterized protein RP551	Putative glycoprotein endopeptidase	glycoprotease family protein identified by match to protein family HMM PF00814	glycoprotease family protein identified by match to protein family HMM PF00814	Putative uncharacterized protein	Putative uncharacterized protein	Putative glycoprotein endopeptidase	Putative glycoprotein endopeptidase	Putative glycoprotein endopeptidase	glycoprotease family protein	Translation initiation factor IF-2	Putative glycoprotein endopeptidase	Glycoprotease family protein	


RICPR00526	Translation initiation factor IF-2	Translation initiation factor	Translation initiation factor IF-2	Residues 1 to 882 of 882 are 99 pct identical to residues 1 to 890 of a 890 aa protein from Escherichia coli O157:H7 ref: NP_312076.1 protein chain initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	conserved gene initiation factor IF2-beta (IF-2 gamma, IF-2 alpha)	Translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF02131; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P02995; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	identified by similarity to SP:P17889; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487 translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Translation initiation factor IF-2	Mb2864c, infB, len: 900 aa. Equivalent to Rv2839c, len: 900 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 900 aa overlap). Probable infB, translation initiation factor IF-2, highly similar, but in part, to Q9Z5I9|IF2_MYCLE|ML1556|MLCB596.14 TRANSLATION INITIATION FACTOR IF-2 from Mycobacterium leprae (924 aa), FASTA scores: opt: 4548, E(): 2.4e-132, (83.6% identity in 933 aa overlap). Also similar in part to others e.g.  Q9K3E2|SC5H4.30 from Streptomyces coelicolor (835 aa), FASTA scores: opt: 2559, E(): 1.3e-71, (59.9% identity in 833 aa overlap); P17889|IF2_BACSU|INFB from Bacillus subtilis (716 aa), FASTA scores: opt: 1782, E(): 6.6e-48, (46.65% identity in 686 aa overlap); P02995|IF2_ECOLI|INFB|SSYG|B3168|Z4529|ECS4049 from Escherichia coli strains O157:H7 and K12 (890 aa), FASTA scores: opt: 1708, E(): 1.3e-45, (46.2% identity in 662 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE IF-2 FAMILY. PROBABLE TRANSLATION INITIATION FACTOR IF-2 INFB	InterProMatches:IPR005225, IPR000178; Molecular Function: GTP binding (GO:0005525), Molecular Function: translation initiation factor activity (GO:0003743), Molecular Function: GTP binding (GO:0005525), Biological Process: translational initiation (GO:0006413) initiation factor IF-2	translation initiation factor IF-2	Translation initiation factor IF-2	
RICPR00527	Transcription elongation protein nusA	N utilization substance protein A	Residues 1 to 495 of 495 are 100 pct identical to residues 1 to 495 of a 495 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289745.1 transcription pausing; L factor	Transcription antitermination factor	N utilization substance protein A	S1 RNA binding domain:KH domain:Type 1 KH domain	Transcription termination-antitermination factor	NusA protein	NusA-homolog	Probable n utilization substance transcription regulator protein	N utilization substance protein A	Transcription elongation protein nusA	conserved gene N utilization substance protein A	Transcription elongation protein nusA	Transcription termination-antitermination factor NusA	identified by similarity to EGAD:10045; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953 N utilization substance protein A, putative	N-utilization substance protein a	N utilization substance protein A	identified by match to protein family HMM PF00013; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954 transcription termination factor NusA	N utilization substance transcription regulator protein	transcription termination-antitermination factor	N utilization substance protein A	Transcription termination-antitermination factor	identified by match to protein family HMM PF00013; match to protein family HMM TIGR01953 transcription termination factor NusA	NusA	N-utilization substance protein A	Transcription elongation protein nusA	Mb2866c, nusA, len: 347 aa. Equivalent to Rv2841c, len: 347 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 347 aa overlap). Probable nusA, N-utilization substance protein A, equivalent to Q9Z5J1|NUSA|ML1558 PROBABLE TRANSCRIPTION TERMINATION/ANTITERMINATION FACTOR from Mycobacterium leprae (347 aa), FASTA scores: opt: 2054, E(): 5.4e-120, (91.95% identity in 347 aa overlap). Also highly similar to others e.g. Q9KYR1|SC5H4.28 PUTATIVE TRANSCRIPTIONAL TERMINATION/ANTITERMINATION FACTOR from Streptomyces coelicolor (340 aa), FASTA scores: opt: 1346, E(): 4.3e-76, (63.35% identity in 341 aa overlap); P32727|NUSA_BACSU N UTILIZATION SUBSTANCE PROTEIN A (371 aa), FASTA scores: opt: 847, E(): 4.1e-45, (43.95% identity in 346 aa overlap); Q9KA74|NUSA|BH2416 TRANSCRIPTIONAL TERMINATOR from Bacillus halodurans (382 aa), FASTA scores: opt: 846, E(): 4.8e-45, (43.15% identity in 373 aa overlap); etc. BELONGS TO THE NUSA FAMILY. PROBABLE N UTILIZATION SUBSTANCE PROTEIN A NUSA	InterProMatches:IPR010213; transcription termination NusA	

RICPR00528	Ribosome maturation factor rimP	Residues 3 to 154 of 154 are 99 pct identical to residues 1 to 152 of a 152 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289746.1 orf, conserved hypothetical protein	UPF0090 protein YPO3498/y0686/YP_0585	Ribosome maturation factor rimP	Ribosome maturation factor rimP	Ribosome maturation factor rimP	identified by similarity to OMNI:NTL01SA1148; match to protein family HMM PF02576 conserved hypothetical protein	Hypothetical UPF0090 protein SE0941	Ribosome maturation factor rimP	conserved hypothetical protein	conserved hypothetical protein	IPR003728: Protein of unknown function DUF150 Hypothetical protein yhbC	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	UPF0090 protein YPTB0478	Hypothetical protein	identified by similarity to OMNI:NTL01LI1347; match to protein family HMM PF02576 conserved hypothetical protein	Ribosome maturation factor rimP	conserved hypothetical protein	Similar to: HI1282, YC82_HAEIN conserved hypothetical protein	Uncharacterized BCR Hypothetical protein	Similar to Q88DV5 Conserved hypothetical protein from Pseudomonas putida (169 aa). FASTA: opt: 402 Z-score: 490.7 E(): 1.7e-19 Smith-Waterman score: 402; 43.243 identity in 148 aa overlap ORF ftt0048 conserved hypothetical protein	Alpha-hemolysin-like protein, hlyA family	Ribosome maturation factor rimP	conserved hypothetical protein	conserved hypothetical protein	similar to unknown protein	Protein of unknown function DUF150	Protein of unknown function DUF150	Uncharacterized protein	
RICPR00529	HEMOLYSIN	Hemolysin-like protein	Hemolysin A	TlyA haemolysin	Hemolysin homolog	Hemolysin	Hemolysin	hemolysin-like protein	Probable hemolysin	hemolysin, putative	Predicted rRNA methylase	TlyA	Hemolysin A	CYTOTOXIN|HAEMOLYSIN HOMOLOGUE TLYA	Mb1720, tlyA, len: 268 aa. Equivalent to Rv1694, len: 268 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 268 aa overlap). tlyA, cytotoxin/haemolysin homologue (see citations below), almost identical to NP_301968.1|NC_002677 cytotoxin/haemolysin homologue TlyA from Mycobacterium leprae (269 aa). TlyA homologues were also identified by PCR in M. avium, M. bovis BCG, but appeared absent in M.  smegmatis, M. vaccae, M. kansasii, M. chelonae and M.  phlei (see first citation below). Also highly similar to CAB83047.1|AJ271681 putative haemolysin from Mycobacterium ulcerans (281 aa); and similar to HLYA_TREHY|Q06803 pore-forming haemolysin/cytotoxin virulence determinant from Treponema hyodysenteriae (240 aa), FASTA scores: opt: 514, E():3e-30, (37.3% identity in 236 aa overlap). CYTOTOXIN|HAEMOLYSIN HOMOLOGUE TLYA	Molecular Function: RNA binding (GO:0003723), Biological Process: hemolysis (GO:0019836) putative hemolysin A YqxC	rRNA methylase	COG1189 Predicted rRNA methylase hemolysin-like protein	Hemolysin	Putative uncharacterized protein yiiB	Putative uncharacterized protein	similar to BR0437, hemolysin A TlyA, hemolysin A	Putative uncharacterized protein gbs0545	Putative hemolysin	identified by match to PFAM protein family HMM PF01479 hemolysin A	Hemolysin	Putative hemolysin	FtsJ cell division protein:S4 domain:Hemolysin A	best blastp match gb|AAK34296.1| (AE006583) putative hemolysin [Streptococcus pyogenes M1 GAS] putative hemolysin	
RICPR00530	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Residues 1 to 428 of 428 are 95 pct identical to residues 1 to 428 of a 428 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288073.1 tyrosine tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	tyrosyl tRNA synthetase	Tyrosyl-tRNA synthetase 1	Tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234 tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	identified by similarity to SP:P00951; match to protein family HMM PF00579; match to protein family HMM TIGR00234 tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	Mb1715, tyrS, len: 424 aa. Equivalent to Rv1689, len: 424 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 424 aa overlap). Probable tyrS, Tyrosyl-tRNA synthase (EC 6.1.1.1), highly similar to many e.g. SYY_ECOLI|P00951 Escherichia coli (EC 6.1.1.1) (423 aa), FASTA scores: opt: 1271, E(): 0, (47.3% identity in 419 aa overlap). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. Probable Tyrosyl-tRNA synthase tyrS (TYRRS)	InterProMatches:IPR002307; Molecular Function: tyrosine-tRNA ligase activity (GO:0004831), Molecular Function: ATP binding (GO:0005524), Biological Process: tyrosyl-tRNA aminoacylation (GO:0006437) tyrosyl-tRNA synthetase	Tyrosyl-tRNA synthetase	COG0162 Tyrosyl-tRNA synthetase tyr-tRNA synthetase	Tyrosyl-tRNA synthetase	IPR001412: Aminoacyl-tRNA synthetase, class I; IPR002307: Tyrosyl-tRNA synthetase, class Ib; IPR002942: RNA-binding S4 tyrosine tRNA synthetase	Tyrosyl-tRNA synthetase	similar to Salmonella typhi CT18 tyrosyl-tRNA synthetase tyrosyl-tRNA synthetase	



RICPR00533	Putative fatty acid oxidation complex trifunctional enzyme	Putative 3-hydroxyacyl-CoA dehydrogenase FadB	Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein	Similar to 3-hydroxyacyl-CoA dehydrogenase hypothetical protein	conserved gene 3-hydroxyacyl CoA dehydrogenase oxidoreductase protein/	Similar to 3-hydroxyacyl-CoA dehydrogenase hypothetical protein	3-hydroxyacyl-CoA dehydrogenase	enoyl-CoA hydratase YusL 3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-hydroxyacyl-CoA dehydrogenase	Putative 3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase	hypothetical protein, similar to 3-hydroxyacyl-CoA dehydrogenase	Ortholog of S. aureus MRSA252 (BX571856) SAR0224 putative fatty oxidation complex protein	hypothetical protein, similar to 3-hydroxyacyl-CoA dehydrogenase	conserved 3-hydroxybutyryl-CoA	N-terminal (85 aa) similar to CBP_YEAST (P31787) Acyl-CoA-binding protein (ACBP) from Saccharomyces cerevisiae (86 aa). FASTA opt: 206 Z-score: 281.8 E(): 7.6e-08 Smith-Waterman score: 206; 44.444identity in 72 aa overlap. C-terminus (110-898) similar to Q8P986 3-hydroxacyl-CoA dehydrogenase from Xanthomonas campestris (790 aa). FASTA: opt: 2495 Z-score: 2747.5 E(): 3.5e-145 Smith-Waterman score: 2495;48.228 identity in 790 aa overlap No match to first 110 aa with Q8P986 or any other 3-hydroxacyl-CoA dehydrogenase. Acyl-CoA-binding protein has only been described in eukaryotes unknown EC_number 5.2.2.3 fusion product of 3-hydroxacyl-CoA dehydrogenase and acyl-CoA-binding protein	Fusion of 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase	3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase	3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase/carnithine racemase fusion	Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding	Enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, C-terminal:3-hydroxyacyl-CoA dehydrogenase, NAD-binding	N-terminal region is similar to Mus musculus short chain 3-hydroxyacyl-CoA dehydrogenase precursor HadH SW:HCDH_MOUSE (Q61425) (314 aa) fasta scores: E(): 3e-21, 33.333% id in 294 aa. Previously sequenced as Staphylococcus aureus putative 3-hydroxyacyl-CoA dehydrogenase FadB TR:AAK51157 (EMBL:AY033081) (753 aa) fasta scores: E(): 0, 98.672% id in 753 aa putative fatty oxidation complex protein	3-hydroxyacyl-CoA dehydrogenase FadB	3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) 3/ enoyl-CoA hydratase (EC 4.2.1.17) I 3	identified by similarity to OMNI:NTL01BH3492; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 3-hydroxyacyl-CoA dehydrogenase protein	similar to gi|49482465|ref|YP_039689.1| [Staphylococcus aureus subsp. aureus MRSA252], percent identity 69 in 754 aa, BLASTP E(): 0.0 putative fatty oxidation complex protein	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein	

RICPR00534	Putative uncharacterized protein RP561	2-polyprenyl-6-methoxyphenol hydroxylase related enzyme	2-octaprenyl-6-methoxyphenol hydroxylase protein	similar to BRA0573, 2-octaprenyl-6-methoxyphenol hydroxylase UbiH, 2-octaprenyl-6-methoxyphenol hydroxylase	2-octaprenyl-6-methoxyphenol hydroxylase	Putative monooxygenase	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	putative monooxygenase NMA2164	Putative monooxygenase	identified by similarity to SP:P75728; match to protein family HMM PF01360; match to protein family HMM TIGR01988 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Putative ubiquinone biosynthesis monooxgenase COQ6	Similar to rc||ubiH sp|P72835|YD00_SYNY3 sp|P25535|VISC_ECOLI sp|P75728|UBIF_ECOLI; Ortholog to ERWE_CDS_09530 Conserved hypothetical protein. Belongs to ubiH/COQ6 family	2-polyprenyl-6-methoxyphenol 4-hydroxylase	Best Blastp Hit: emb|CAB85376.1| (AL162758) putative monooxygenase [Neisseria meningitidis] COG0654 2-Octaprenyl-6-metoxyphenol hydroxylase; VisC putative monooxygenase	2-polyprenyl-6-methoxyphenol hydroxylase related enzyme precursor	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6	Phosphofructokinase:Flavoprotein monooxygenase:Aromatic-ring hydroxylase	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6	coenzyme Q6 homolog, monooxygenase (S. cerevisiae) [Source:HGNC Symbol;Acc:20233]	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	2-octaprenyl-6-methoxyphenol 4-monoxygenase	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	2-polyprenyl-6-methoxyphenol 4-hydroxylase	putative 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase similarity:fasta; with=UniProt:UBIF_ECOLI (EMBL:ECD706); Escherichia coli.; ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-).; length=391; id 27.688; 372 aa overlap; query 5-363; subject 7-371 similarity:fasta; with=UniProt:Q8UEG3_AGRT5 (EMBL:AE008100); Agrobacterium tumefaciens (strain C58/ATCC 33970).; ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase (AGR_C_3301p).; length=402; id 65.500; 400 aa overlap; query 1-400; subject 1-400	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family	ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988	
RICPR00535	Putative response regulator ntrX-like	identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 nitrogen assimilation regulatory protein NtrX	Nitrogen regulation protein	COG2204 two-component response regulator	Nitrogen assimilation regulatory protein NtrX	Nitrogen assimilation regulatory protein NtrX	Nitrogen assimilation regulatory protein ntrX	Two component signal transduction response regulator	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. Fis-type:AAA ATPase. Two-component signal transduction system (phosphorelay). Citation: Pawlowski K, Klosse U, de Bruijn FJ. (1991) Mol Gen Genet.  231(1):124-38. Nitrogen assimilation transcriptional regulator, NtrX	Two component, sigma54 specific, transcriptional regulator, Fis family	two component, sigma54 specific, transcriptional regulator, Fis family	Nitrogen assimilation regulatory protein NtrX	Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver: (1.9e-35) sigma-54 factor, interaction region: (3.8e-92) helix-turn-helix, Fis-type: (1.3e-09) SMART: ATPase: (2.4e-12) KEGG: sil:SPO2085 nitrogen assimilation regulatory protein NtrX, ev=0.0, 81% identity	two component, sigma54 specific, transcriptional regulator, Fis family	Two component, sigma54 specific, transcriptional regulator, Fis family	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains	Sigma-54 dependent DNA-binding response regulator	response regulator containing sigma 54 interaction domain	Response regulator of a two component response regulator cytoplasmic protein	Response regulator of a two component response regulator cytoplasmic protein	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: rsp:RSP_2840 nitrogen assimilation transcriptional regulator, NtrX	nitrogen assimilation regulatory protein	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: pca:Pcar_2345 putative transcriptional regulator, fis family	two component transcriptional regulator, Fis family	sigma-54 dependent DNA-binding reponse regulator CrdA identified by similarity to GB:AAO23978.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199	Two component, sigma54 specific, transcriptional regulator, Fis family	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: rsp:RSP_2840 nitrogen assimilation transcriptional regulator, NtrX	two component, sigma54 specific, transcriptional regulator, Fis family PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type SMART: AAA ATPase KEGG: sat:SYN_02713 response regulator containing sigma 54 interaction domain	
RICPR00536	Putative uncharacterized protein RP563	Uncharacterized secreted protein containing pentapeptide repeats	conserved hypothetical protein similar to NP_220935.1 hypothetical protein	COG1357 Uncharacterized low-complexity protein	Pentapeptide repeat domain protein	pentapeptide repeat domain protein identified by match to protein family HMM PF00805	Pentapeptide repeat	pentapeptide repeat family protein identified by match to protein family HMM PF00805	unknown	pentapeptide repeat family protein identified by match to protein family HMM PF00805	Pentapeptide repeat protein precursor	pentapeptide repeat protein identified by match to protein family HMM PF00805	Pentapeptide repeat	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Pentapeptide repeat protein	hypothetical protein	Putative uncharacterized protein	Pentapeptide repeat protein	pentapeptide repeat protein PFAM: pentapeptide repeat protein KEGG: plt:Plut_1237 pentapeptide repeat family protein	Pentapeptide repeat protein precursor	Putative uncharacterized protein	Pentapeptide repeat domain protein precursor	Tll0709 protein	status:Predicted	Pentapeptide repeat protein	
RICPR00537	Putative uncharacterized protein RP564	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00538	PENICILLIN-BINDING PROTEIN	Penicillin binding protein transpeptidase domain	MrdA protein	Probable substrate-binding transmembrane protein	Penicillin-binding protein 2	Cell division protein FtsI/penicillin-binding protein 2	Penicillin-binding protein A	Mb0016c, pbpA, len: 491 aa. Equivalent to Rv0016c, len: 491 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 491 aa overlap). Probable pbpA, penicillin-binding protein, equivalent to NP_301144.1|NC_002677 putative penicillin-binding protein from Mycobacterium leprae (492 aa); and highly similar to MLCB1770_1 penicillin binding protein from Mycobacterium leprae (474 aa), FASTA scores: opt: 2516, E(): 0, (82.4% identity in 472 aa overlap). Also similar to others e.g.  T36716 from Streptomyces coelicolor (490 aa); AAF61246.1|AF241575|PbpA from Streptomyces griseus (485 aa); NP_347146.1|NC_003030 from Clostridium acetobutylicum (482 aa); E235825|pbpA penicillin binding protein (325 aa), FASTA scores: opt: 1618, E(): 0, (78.3% identity in 323 aa overlap); etc. And also similar to MTCY270_5 and MTV003_8 from Mycobacterium tuberculosis. PROBABLE PENICILLIN-BINDING PROTEIN PBPA	Penicillin-binding protein 2	Penicillin-binding protein 2/cell division protein FtsI	Cell division protein FtsI	Penicillin-binding protein	PENICILLIN-BINDING PROTEIN	Penicillin-binding protein 2	COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2 penicillin-binding protein	Penicillin-binding protein 2	penicillin-binding protein 2 Cell division protein FtsI	Similar to Streptomyces griseus PbpA SWALL:Q9L656 (EMBL:AF241575) (485 aa) fasta scores: E(): 1.3e-40, 33.47% id in 487 aa putative penicillin-binding protein	Penicillin-binding protein 2	penicillin-binding protein 2	Cell elongation specific D,D-transpeptidase	identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein	Penicillin binding protein transpeptide	Cell division protein FtsI	putative penicillin-binding protein 2	Penicillin-binding protein, transpeptidase:Penicillin-binding protein, dimerization domain	Penicillin-binding protein	similar to gi|27468156|ref|NP_764793.1| [Staphylococcus epidermidis ATCC 12228], percent identity 79 in 680 aa, BLASTP E(): 0.0 penicillin-binding protein 3	Cell division protein FtsI	
RICPR00539	Uncharacterized protein RP566	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	PP-loop superfamily ATPase	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00540	PENICILLIN BINDING PROTEIN	Penicillin-binding protein 3	Residues 1 to 588 of 588 are 99 pct identical to residues 1 to 588 of a 588 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285780.1 septum formation; penicillin-binding protein 3; peptidoglycan synthetase	Penicillin-binding protein 3	FtsI protein	Probable penicillin-binding 3 pbp-3 transmembrane protein	Peptidoglycan synthetase ftsI	Peptidoglycan synthetase FtsI precursor	conserved gene penicillin binding protein 3	Peptidoglycan synthetase FtsI precursor	penicillin-binding protein	Penicillin-binding protein 3	Penicillin binding protein 3	Cell division protein FtsI/penicillin-binding protein 2	identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717 penicillin-binding protein	PbpB	Cell division penicillin-binding protein	Probable penicillin-binding membrane protein pbpB	Mb2187c, pbpB, len: 679 aa. Equivalent to Rv2163c, len: 679 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 679 aa overlap). Probable pbpB, penicillin-binding membrane protein, similar to many bacterial PBP2 proteins e.g.  P11882|PBP2_NEIME|PENA|NMA2072|NMB0413 penicillin-binding protein 2 (pbp-2) from Neisseria meningitidis (serogroups A and B) (581 aa), FASTA scores: opt: 665, E(): 1.6e-31, (33.2% identity in 591 aa overlap); etc. Also similar to Rv0016c and Rv2864c from Mycobacterium tuberculosis (2.8e-10). Contains PS00017 possible ATP/GTP-binding site motif A (P-loop) near C-terminus. FASTA best: PBP2_NEIME P11882 penicillin-binding protein 2 (pbp-2). (581 aa) opt: 665, E(): 1.6e-31; (33 .2% identity in 591 aa overlap) Probable penicillin-binding membrane protein pbpB	sporulation specific penicillin-binding protein stage V sporulation protein D	Penicillin-binding protein 3	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark penicillin-binding protein 3	Penicillin-binding protein 3	Division specific transpeptidase, penicillin- binding protein 3	Penicillin-binding protein 2	putative peptidoglycan synthetase (pbp transpeptidase domain)	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme septum formation, penicillin binding protein 3, peptidoglycan synthetase	COG0768 FtsI cell division protein FtsI/penicillin-binding protein 2 penicillin-binding protein	Penicillin-binding protein 3	
RICPR00541	Uncharacterized protein RP568	Cell division protein FtsL	Cell division protein FtsL	Cell division protein FtsL	Cell division protein FtsL	Cell division protein FtsL	hypothetical protein	Cell division protein FtsL	Cell division protein FtsL	
RICPR00542	S-adenosyl-L-methionine-dependent methyltransferase mraW	hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	Residues 1 to 313 of 313 are 99 pct identical to residues 34 to 346 of a 346 aa protein from Escherichia coli pir: QQECFT yabC protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	conserved hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	Similar to S-adenosyl-methyltransferase MraW hypothetical protein	conserved gene S-adenosylmethyl transferase MraW	Similar to S-adenosyl-methyltransferase MraW hypothetical protein	S-adenosyl-L-methionine-dependent methyltransferase mraW	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	MraW S-adenosyl-methyltransferase	hypothetical protein	identified by similarity to SP:P60391; match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosylmethionine-dependent methyltransferase, putative	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	S-adenosyl-L-methionine-dependent methyltransferase mraW	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 S-adenosyl-methyltransferase MraW	
RICPR00543	Protein mraZ	Residues 13 to 164 of 164 are 99 pct identical to residues 1 to 152 of a 152 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285777.1 orf, conserved hypothetical protein	Protein mraZ	Protein mraZ	Protein mraZ	similar to conserved hypothetical protein hypothetical protein	conserved gene MraZ protein	similar to conserved hypothetical protein hypothetical protein	Protein mraZ	identified by match to protein family HMM PF02381 MraZ, putative	MraZ protein	conserved hypothetical protein	IPR003444: Protein of unknown function UPF0040 putative cytoplasmic protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Protein mraZ	identified by similarity to SP:Q929X5; match to protein family HMM PF02381; match to protein family HMM TIGR00242 MraZ protein	Protein mraZ	Similar to: HI1129, MRAZ_HAEIN MraZ	Uncharacterized BCR Hypothetical protein	Protein mraZ	Uncharacterized conserved protein	Protein mraZ	conserved hypothetical protein	MraZ protein	identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242 mraZ protein	Cell division protein MraZ	identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242 mraZ protein	identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242 mraZ protein	Protein of unknown function UPF0040	
RICPR00544	SODIUM/PANTOTHENATE SYMPORTER	InterProMatches:IPR001734; Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020) proline transporter	Na+/solute symporter	Sodium/pantothenate symporter	Na+/solute symporter	sodium:solute symporter family protein identified by match to protein family HMM PF00474	Sodium/pantothenate symporter split gene	transcript_id=ENSGACT00000023340	Sodium/pantothenate symporter	Na+/solute symporter	Sodium, solute symporter	Na+/solute symporter	Sodium/pantothenate symporter	Na+/solute symporter precursor	Sodium/pantothenate symporter	Sodium/pantothenate symporter	Sodium/pantothenate symporter	permeases (major facilitator family)	Sodium/pantothenate symporter	Predicted symporter protein	Putative Na+/solute symporter	Na+/solute symporter PFAM: Na+/solute symporter KEGG: plt:Plut_0924 twin-arginine translocation pathway signal	Putative uncharacterized protein	Na+/solute symporter precursor	Major facilitator superfamily permease	Sodium/pantothenate symporter	Na+/solute symporter	
RICPR00545	UvrABC system protein C	Excinuclease ABC subunit c	UvrABC system protein C	Residues 1 to 610 of 610 are 99 pct identical to residues 1 to 610 of a 610 aa protein from Escherichia coli dbj: BAA15733.1 Excinuclease ABC subunit C.	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	similar to excinuclease ABC subunit C hypothetical protein	conserved gene excinuclease ABC subunit	similar to excinuclease ABC subunit C hypothetical protein	UvrABC system protein C	identified by similarity to EGAD:18538; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 excinuclease ABC, C subunit	UvrABC system protein C	Excinuclease ABC subunit C	excinuclease ABC subunit C	identified by match to protein family HMM PF00633; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 UvrABC system protein C	UvrABC system protein C	excinuclease ABC subunit C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	UvrABC system protein C	identified by similarity to SP:P14951; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194 excinuclease ABC, C subunit	UvrABC system protein C	
RICPR00546	Uncharacterized protein RP573	Hypothetical protein	unknown	unknown	Protein of unknown function DUF461	Hypothetical protein	Hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical exported protein	Putative uncharacterized protein	conserved hypothetical protein Code: S; COG: COG2847	conserved hypothetical protein hypothetical protein	Putative uncharacterized protein precursor	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative exported protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	

RICPR00547	Protein translocase subunit secA	Preprotein translocase secA subunit	Protein translocase subunit secA	Residues 1 to 901 of 901 are 99 pct identical to residues 1 to 901 of a 901 aa protein from Escherichia coli K12 ref: NP_414640.1 preprotein translocase; secretion protein	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA	Protein translocase subunit secA 1	Protein translocase subunit secA	Preprotein translocase secA subunit	preprotein translocase subunit	Protein translocase subunit secA	Protein translocase subunit secA	Preprotein translocase, secretion protein SecA subunit	conserved gene preprotein translocase; secretion protein SecA	Preprotein translocase, secretion protein SecA subunit	Protein translocase subunit secA	identified by similarity to EGAD:17570; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	Protein translocase subunit secA	Protein translocase subunit SecA	preprotein translocase SecA subunit	identified by match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	Protein translocase subunit secA	preprotein translocase binding subunit (ATPase)	Protein translocase subunit secA	Preprotein translocase subunit	Preprotein translocase SecA subunit	Protein translocase subunit secA	identified by similarity to SP:P28366; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM TIGR00963 preprotein translocase, SecA subunit	
RICPR00548	Parvulin-like PPIase	PpiC-type peptidyl-prolyl cis-trans isomerase	Putative isomerase rotamase signal peptide protein	identified by match to protein family HMM PF00639 PPIC-type PPIASE domain protein	Probable signal peptide protein	identified by similarity to SP:Q46105; match to protein family HMM PF00639 major antigenic peptide PEB4	pric/parvulin family of rotamase; Molecular Function: isomerase activity (GO:0016853) putative PpiC-type peptidyl-prolyl cis-trans isomerase	COG0760 Parvulin-like peptidyl-prolyl isomerase PrtM precursor	Putative uncharacterized protein	Peptidyl-prolyl cis-trans isomerase	Hypothetical protein JHP0161 precursor	Hypothetical protein	Peptidyl-prolyl cis-trans isomerase family protein	PpiC-type peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase precursor	Parvulin-like peptidyl-prolyl isomerase	peptidyl-prolyl cis-trans isomerase (protein export protein)	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	Protein export protein PrsA precursor	PpiC-type peptidyl-prolyl cis-trans isomerase	identified by similarity to SP:P77241; match to protein family HMM PF00639 putative peptidyl-prolyl cis-trans isomerase, PpiC-type	Protein maturation protease precursor (peptidylprolyl isomerase)	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	putative protein foldase	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	
RICPR00549	Holo-[acyl-carrier-protein] synthase	Acyl carrier protein synthase	Residues 1 to 126 of 126 are 98 pct identical to residues 1 to 126 of a 126 aa protein from Escherichia coli K12 ref: NP_417058.1 CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	Holo-[acyl-carrier-protein] synthase	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	Holo-[acyl-carrier protein] synthase	identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	Holo-[acyl-carrier-protein] synthase	holo-(acyl carrier protein) synthase	Holo-[acyl-carrier-protein] synthase	identified by similarity to SP:P24224; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556 holo-(acyl-carrier-protein) synthase	Holo-(Acyl-carrier-protein) synthase protein	holo-[acyl-carrier protein] synthase	Holo-[acyl-carrier-protein] synthase	holo-acyl-carrier protein	Holo-[acyl-carrier-protein] synthase	IPR002582: Holo-acyl carrier protein synthase holo-[acyl-carrier-protein] synthase, subunit (CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase, phosphopanthetheinyltransferase)	Phosphopantetheinyl transferase (holo-ACP synthase)	similar to Salmonella typhi CT18 holo-[acyl-carrier protein] synthase holo-[acyl-carrier protein] synthase	Similar to many including: Escherichia coli holo-[acyl-carrier protein] synthase AcpS or SWALL:ACPS_ECOLI (SWALL:P24224) (125 aa) fasta scores: E(): 6e-06, 32.23% id in 121 aa and Clostridium perfringens holo-[acyl-carrier protein] synthase AcpS or cpe0291 SWALL:ACPS_CLOPE (SWALL:Q8XNP1) (133 aa) fasta scores: E(): 1.6e-08, 43.2% id in 125 aa holo-[acyl-carrier protein] synthase	Putative holo-[acyl-carrier protein] synthase	similar to BR0659, holo-(acyl-carrier-protein) synthase AcpS, holo-(acyl-carrier-protein) synthase	
RICPR00550	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain	RNA polymerase, omega subunit	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase, omega subunit	DNA-directed RNA polymerase, omega subunit TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: mex:Mext_3197 DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase subunit omega	DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Evidence 2b : Function of strongly homologous gene; PubMedId : 2549050, 3549461, 89155421, 90067843, 93044520; Product type e : enzyme	
RICPR00551	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Residues 1 to 419 of 419 are 100 pct identical to residues 1 to 419 of a 419 aa protein from Escherichia coli K12 ref: NP_417656.1 first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	conserved gene UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by similarity to SP:P28909; match to protein family HMM PF00275; match to protein family HMM TIGR01072 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1	identified by similarity to SP:P70965; match to protein family HMM PF00275; match to protein family HMM TIGR01072 UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase protein	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Mb1348, murA, len: 418 aa. Equivalent to Rv1315, len: 418 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 418 aa overlap). Probable murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), highly similar to many e.g. MURA_MYCLE|P45821 (418 aa), FASTA scores: opt: 2495, E(): 0, (96.2% identity in 396 aa overlap). BELONGS TO THE EPSP SYNTHASE FAMILY.  MURA SUBFAMILY. PROBABLE UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE MURA	InterProMatches:IPR005750; Molecular Function: transferase activity (GO:0016740), Biological Process: UDP-N-acetylgalactosamine biosynthesis (GO:0019277) UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	
RICPR00552	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	Residues 2 to 805 of 805 are 100 pct identical to residues 1 to 804 of a 804 aa protein from Escherichia coli O157:H7 ref: NP_312661.1 DNA gyrase subunit B GyrB	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase, subunit B (type II topoisomerase)	conserved gene DNA gyrase subunit B	DNA gyrase, subunit B (type II topoisomerase)	DNA gyrase subunit B	identified by similarity to SP:P20832; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA gyrase B subunit	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	DNA gyrase subunit B	DNA gyrase B subunit	DNA gyrase subunit B	DNA gyrase subunit B	DNA Gyrase Subunit B	DNA gyrase subunit B	identified by similarity to SP:P55992; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059 DNA gyrase, B subunit	
RICPR00553	Putative uncharacterized protein RP581	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460 HAD-superfamily subfamily IIA hydrolase, TIGR01459	Hydrolase	similar to BRA0199, hydrolase, haloacid dehalogenase-like family hydrolase, haloacid dehalogenase-like family	Putative uncharacterized protein	haloacid dehalogenase-like hydrolase	HAD-superfamily subfamily IIA hydrolase	HAD-superfamily subfamily IIA hydrolase	Haloacid dehalogenase-like hydrolase:HAD-superfamily subfamily IIA hydrolase, hypothetical 3:HAD-superfamily hydrolase, subfa...	HAD superfamily hydrolase Hydrolase, haloacid dehalogenase-like family putative HAD superfamily protein	HAD-superfamily subfamily IIA hydrolase, hypothetical 3	HAD-superfamily hydrolase, subfamily IIA	HAD-superfamily subfamily IIA hydrolase	putative hydrolase similarity:fasta; with=UniProt:NAGD_ECOLI (EMBL:B64802); Escherichia coli O157:H7.; nagD; NagD protein.; length=250; id 28.992; 238 aa overlap; query 18-247; subject 6-224 similarity:fasta; with=UniProt:Q7D0X9 (EMBL:AE008002); Agrobacterium tumefaciens (strain C58/ATCC 33970).; AGR_C_1226p.; length=282; id 73.404; 282 aa overlap; query 1-282; subject 1-282	HAD-superfamily subfamily IIA hydrolase	HAD-superfamily subfamily IIA hydrolase, hypothetical 3 TIGRFAM: HAD-superfamily subfamily IIA hydrolase, hypothetical 3: (9.6e-27) HAD-superfamily hydrolase, subfamily IIA: (6.4e-25) PFAM: Haloacid dehalogenase-like hydrolase: (0.00081) KEGG: sil:SPO3151 HAD-superfamily subfamily IIA hydrolase, TIGR01459, ev=1e-137, 78% identity	HAD-superfamily hydrolase, subfamily IIA	putative hydrolase, haloacid dehalogenase-like family protein similar to BRA0199 [Brucella suis 1330] and AGR_C_1226p [Agrobacterium tumefaciens] Similar to swissprot:Q8FX84 Putative location:bacterial cytoplasm Psort-Score: 0.0600; go_function: hydrolase activity [goid 0016787]; go_process: metabolism [goid 0008152]	HAD-superfamily hydrolase, subfamily IIA	HAD-superfamily subfamily IIA hydrolase like protein	HAD-superfamily hydrolase, subfamily IIA	HAD hydrolase, IIA family	HAD-superfamily subfamily IIA hydrolase, hypothetical 2	possible sugar phosphatase, HAD superfamily	Predicted sugar phosphatase of the HAD superfamily	HAD-superfamily subfamily IIA hydrolase like protein TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: rsp:RSP_2306 putative HAD superfamily protein	HAD-superfamily hydrolase, subfamily IIA TIGRFAM: HAD-superfamily hydrolase, subfamily IIA PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: rde:RD1_3618 hydrolase, putative	HAD-superfamily hydrolase, subfamily IIA TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: rpc:RPC_0896 HAD-superfamily hydrolase, subfamily IIA	HAD-superfamily hydrolase, subfamily IIA	
RICPR00554	MAGNESIUM TRANSPORTER	Mg++ Transporter	Putative divalent cation transport protein	CBS domain:Divalent cation transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	Probable magnesium transporter	Magnesium transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark Mg++ transporter	Mg/Co/Ni transporter MgtE	Mg++ transporter	Putative divalent cation (Mg++/Co++/Ni++) transport protein	Hypothetical inner membrane protein	Similar to rp||mgtE rc||mgtE; Ortholog to ERGA_CDS_04720 Magnesium transporter	COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) magnesium transporter	Magnesium transporter	COG2239 Mg/Co/Ni transporter	Magnesium transporter	Mg/Co/Ni transporter MgtE (contains CBS domain)	Magnesium transporter	Mg++ transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	magnesium transport protein mgtE	Similar to rp||mgtE rc||mgtE; Ortholog to ERWE_CDS_04820 Magnesium transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 magnesium transporter	Divalent cation transporter	Magnesium transporter	MgtE putative magnesium transporter	Divalent cation transporter	
RICPR00555	UPF0092 membrane protein RP585	Preprotein tranlocase protein	Preprotein translocase subunit YajC	similar to BR0890, preprotein translocase, YajC subunit preprotein translocase, YajC subunit	Putative uncharacterized protein	Similar to sp|Q9ZCW9|Y585_RICPR rc||RC0893; Ortholog to ERGA_CDS_08130 Conserved hypothetical protein (may be related to translocase)	Preprotein translocase YajC subunit	Preprotein translocase subunit YajC	Similar to sp|Q9ZCW9|Y585_RICPR rc||RC0893; Ortholog to ERWE_CDS_08220 Conserved hypothetical protein (may be related to translocase)	Preprotein translocase YajC subunit	YajC	YajC	COG1862, YajC, Preprotein translocase subunit YajC.  pfam02699, YajC, Preprotein translocase subunit. Putative preprotein translocase subunit YajC	Preprotein translocase YajC subunit	putative Sec translocase associated protein similarity:fasta; with=UniProt:YAJC_ECOLI (EMBL:AE016756); Shigella flexneri.; yajC; Hypothetical UPF0092 protein yajC.; length=110; id 32.075; 106 aa overlap; query 2-107; subject 4-105 similarity:fasta; with=UniProt:Q8UF37_AGRT5 (EMBL:AE008079); Agrobacterium tumefaciens (strain C58/ATCC 33970).; yajC; Preprotein tranlocase protein (AGR_C_2879p).; length=115; id 69.565; 115 aa overlap; query 1-115; subject 1-114	YajC	preprotein translocase, YajC subunit identified by similarity to SP:P19677; match to protein family HMM PF02699; match to protein family HMM TIGR00739	preprotein translocase, YajC subunit	preprotein translocase, YajC subunit identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739	hypothetical protein similarity to COG1862 Preprotein translocase subunit YajC	preprotein translocase, YajC subunit	Preprotein translocase subunit YajC	preprotein translocase, YajC subunit TIGRFAM: preprotein translocase, YajC subunit PFAM: YajC family protein KEGG: rsp:RSP_1797 putative preprotein translocase subunit YajC	preprotein translocase, YajC subunit TIGRFAM: preprotein translocase, YajC subunit PFAM: YajC family protein KEGG: mag:amb2515 preprotein translocase subunit YajC	Preprotein translocase, YajC subunit	Protein translocase subunit yajC	preprotein translocase, YajC subunit TIGRFAM: preprotein translocase, YajC subunit PFAM: YajC family protein KEGG: tfu:Tfu_2092 YajC	preprotein translocase, YajC subunit TIGRFAM: preprotein translocase, YajC subunit PFAM: YajC family protein KEGG: rpa:RPA2832 putative membrane protein, possible preprotein translocase	Preprotein translocase, YajC subunit	
RICPR00556	Protein-export membrane protein secD	Protein-export membrane protein SecD	SecD/SecF/SecDF export membrane proteins	Probable-export membrane protein secd transmembrane	Protein-export membrane protein SecD	Similar to protein-export membrane protein SecD hypothetical protein	conserved gene protein export protein SecD	Similar to protein-export membrane protein SecD hypothetical protein	protein-export membrane protein SecD	identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 protein-export membrane protein SecD	Protein-export membrane protein secD	Protein-export membrane protein	Preprotein translocase subunit SecD	identified by similarity to SP:P19673; match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129 protein-export membrane protein SecD	preprotein translocase subunit D	Protein-export membrane protein SecD	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark protein-export membrane protein	IPR000508: Signal peptidase; IPR003335: SecD/SecF/SecDF export membrane protein; IPR005791: SecD export membrane protein preprotein translocase, IISP family, part of the channel	Preprotein translocase subunit SecD	similar to Salmonella typhi CT18 protein-export membrane protein SecD protein-export membrane protein SecD	Preprotein translocase subunits SecD	Protein-export membrane protein	Protein-export membrane protein	Preprotein translocase, IISP family, part of the channel	Hypothetical protein	Protein-export membrane protein	preprotein translocase subunit	Similar to sp|Q9ZCW8|SECD_RICPR; Ortholog to ERGA_CDS_08880 Protein-export membrane protein secD	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter preprotein translocase, IISP family, part of the channel	
RICPR00557	SCO2-like protein RP587	Probable lipoprotein	identified by similarity to SP:Q52720; match to protein family HMM PF02630 regulatory protein SenC	Putative uncharacterized protein	identified by match to protein family HMM PF02630 SCO1/SenC family protein	conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative lipoprotein	Similar to sp|Q9ZCW7|SC22_RICPR sp|Q92H76|SC22_RICCN; Ortholog to ERGA_CDS_01470 SCO2 like-protein	similar to AAB02878.1 major surface protein 5	SCO2 protein precursor	LmjF20.0840, predicted protein, len = 232 aa, cytochrome c oxidase assembly factor, possible; predicted pI = 4.8292; good similarity to Q9N8U9, cytochrome c oxidase assembly factor, possible in Trypanosoma brucei, contains a SCO1/SenC domain cytochrome c oxidase assembly factor-like protein	putative SCO1/SenC family protein,probably involved in biogenesis of respiratory cytochrome aa3 oxidase	conserved hypothetical protein	Similar to sp|Q9ZCW7|SC22_RICPR sp|Q92H76|SC22_RICCN; Ortholog to ERWE_CDS_01510 SCO2 like-protein	identified by match to protein family HMM PF02630 Sco1/SenC family protein	Twin-arginine translocation pathway signal	Sco2 protein precursor	Best Blastp Hit: gb|AAF41931.1| (AE002508) conserved hypothetical protein [Neisseria meningitidis MC58] COG1999 Uncharacterized protein SCO1/SenC/PrrC conserved hypothetical protein	Electron transport protein SCO1/SenC	Electron transport protein SCO1/SenC	putative SCO1/SenC family protein,	Electron transport protein SCO1/SenC	Electron transport protein SCO1/SenC	transcript_id=ENSDNOT00000015751	Sco2 protein precursor	uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems COG1999	putative Sco copper chaperone family protein similarity:fasta; with=UniProt:SCO1_YEAST (EMBL:AY557863); Saccharomyces cerevisiae (Baker's yeast).; SCO1; SCO1 protein, mitochondrial precursor.; length=295; id 35.625; 160 aa overlap; query 37-195; subject 112-269 similarity:fasta; with=UniProt:Q8UDP8_AGRT5 (EMBL:AE008124); Agrobacterium tumefaciens (strain C58/ATCC 33970).; sco1; Sco1 protein homolog (AGR_C_3756p).; length=202; id 73.500; 200 aa overlap; query 3-202; subject 1-199	
RICPR00558	Cytochrome c-type biogenesis protein ccmE	Residues 1 to 159 of 159 are 100 pct identical to residues 1 to 159 of a 159 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288777.1 cytochrome c biogenesis, possible subunit of a heme lyase	Cytochrome c-type biogenesis protein ccmE	Cytochrome c-type biogenesis protein ccmE	cytochrome c-type biogenesis protein CcmE	conserved gene cytochrome c-type biogenesis protein CcmE	cytochrome c-type biogenesis protein CcmE	Cytochrome c-type biogenesis protein ccmE	Cytochrome-c biosynthesis heme-carrier protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark C-type cytochrome biogenesis protein	Cytochrome c-type biogenesis protein ccmE	IPR004329: CcmE/CycJ protein periplasmic heme-dependent peroxidase, cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein CcmE	similar to Salmonella typhi Ty2 cytochrome c-type biogenesis protein E1 cytochrome c-type biogenesis protein E1	similar to BR0608, cytochrome c-type biogenesis protein CcmE CcmE, cytochrome c-type biogenesis protein CcmE	Cytochrome c-type biogenesis protein ccmE	Cytochrome c-type biogenesis protein ccmE	Similar to sp|P52224|CYCJ_PSEFL sp|P45401|CCME_BRAJA sp|P45402|CCME_RHIME sp|P33928|CCME_ECOLI rc||ccmE rp||ccmE sp|P45036|CCME_HAEIN; Ortholog to ERGA_CDS_03060 Cytochrome c-type biogenesis protein cycJ/ccmE	COG2332 CcmE cytochrome c-type biogenesis protein CcmE cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein ccmE	CcmE; COG2332 cytochrome c biogenesis protein	cytochrome c-type biogenesis heme chaperone	Similar to: HI1093, CCME_HAEIN cytochrome c-type biogenesis protein CcmE	Cytochrome c-type biogenesis protein CcmE CcmE protein	Cytochrome c-type biogenesis protein ccmE	Cytochrome c-type biogenesis protein CcmE	Cytochrome c-type biogenesis protein ccmE	Cytochrome C-type biogenesis protein	Cytochrome c-type biogenesis protein CycJ	
RICPR00559	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Residues 14 to 189 of 189 are 99 pct identical to residues 1 to 176 of a 176 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290858.1 inorganic pyrophosphatase	Inorganic pyrophosphatase	inorganic pyrophosphatase	Inorganic pyrophosphatase	Ppa	inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	conserved gene inorganic pyrophosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	soluble inorganic pyrophosphatase	Inorganic diphosphatase	Inorganic pyrophosphatase	Inorganic pyrophosphatase	identified by match to protein family HMM PF00719 inorganic pyrophosphatase	Ppa	Pyrophosphate phospho-hydrolase protein	Inorganic pyrophosphatase	Mb3652, ppa, len: 162 aa. Equivalent to Rv3628, len: 162 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 162 aa overlap). ppa, inorganic pyrophosphatase (EC 3.6.1.1) (see first citation), identical to O69540|IPYR_MYCLEPPA|ML0210|MLCB2548.21 INORGANIC PYROPHOSPHATASE from Mycobacterium leprae (162 aa) FASTA scores: opt: 1018, E(): 1.3e-59, (89.5% identity in 162 aa overlap). Also highly similar to many bacterial pyrophosphatases e.g. Q9X8I9|IPYR_STRCO|PPA|SCE9.16 from Streptomyces coelicolor (163 aa), FASTA scores: opt: 773, E(): 1.3e-43, (67.5% identity in 163 aa overlap); O05545|IPYR_GLUOX|PPA from Gluconobacter oxydans (Gluconobacter suboxydans) (176 aa), FASTA scores: opt: 553, E(): 3.2e-29, (53.8% identity in 145 aa overlap); P77992|IPYR_THELI|PPA from Thermococcus litoralis (176 aa) FASTA scores: opt: 537, E(): 3.5e-28, (49.35% identity in 152 aa overlap); P50308|IPYR_SULAC|PPA from Sulfolobus acidocaldarius (173 aa), FASTA scores: opt: 518, E(): 6e-27, (45.3% identity in 159 aa overlap); etc. BELONGS TO THE PPASE FAMILY. COFACTOR: REQUIRES THE PRESENCE OF DIVALENT METAL CATION. MAGNESIUM CONFERS THE HIGHEST ACTIVITY. BINDS 4 DIVALENT CATIONS PER SUBUNIT (BY SIMILARITY). INORGANIC PYROPHOSPHATASE PPA (PYROPHOSPHATE PHOSPHO-HYDROLASE) (PPASE) (INORGANIC DIPHOSPHATASE) (DIPHOSPHATE PHOSPHO-HYDROLASE)	Inorganic pyrophosphatase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark inorganic pyrophosphatase	Inorganic pyrophosphatase	IPR008162: Inorganic pyrophosphatase; IPR008163: Bacterial/Archaeal inorganic pyrophosphatase inorganic pyrophosphatase	Inorganic pyrophosphatase	similar to Salmonella typhi CT18 inorganic pyrophosphatase inorganic pyrophosphatase	
RICPR00560	Virulence factor mviN homolog	Cytoplasmic membrane protein	Residues 14 to 524 of 524 are 99 pct identical to residues 1 to 511 of a 511 aa protein from Escherichia coli O157:H7 ref: NP_309474.1 putative virulence factor	Virulence factor mviN homolog	Putative membrane protein	Virulence factor MVIN-like	Probable transmembrane protein	similar to integral membrane protein MviN hypothetical protein	virulence factor MviN homolog.	identified by similarity to SP:O05467; match to protein family HMM PF03023; match to protein family HMM TIGR01695 integral membrane protein MviN	Uncharacterized membrane protein	identified by similarity to SP:O25551; match to protein family HMM PF03023; match to protein family HMM TIGR01695 integral membrane protein MviN	Integral membrane protein MviN	Virulence factor-related protein	putative virulence factor	similar to Salmonella typhi CT18 virulence factor MviN virulence factor MviN	Similar to Chlamydia muridarum virulence factor MviN homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The Chlamydia trachomatis orthologue of this gene is expressed during natural infection. putative membrane protein	Putative uncharacterized protein	similar to BR0143, virulence factor MviN MviN, virulence factor	Virulence factor mviN homolog	Virulence factor mviN homolog	Virulence factor mviN, possible MOP Superfamliy efflux pump	Putative inner membrane virulence factor protein	Virulence factor mviN protein	conserved hypothetical protein	COG0728 MviN uncharacterized membrane protein putative virulence factor similar to NP_360535.1 virulence factor MVIN	COG0728 uncharacterized membrane protein	Identical to previously sequenced Bacteroides fragilis putative flippase Wzx SWALL:Q93QW4 (EMBL:AF189282) (482 aa) fasta scores: E(): 3.8e-179, 100% id in 482 aa, and to Streptococcus pneumoniae putative oligosaccharide repeat unit transporter CPS19cJ SWALL:Q9RQG9 (EMBL:AF105116) (481 aa) fasta scores: E(): 3.5e-54, 32.7% id in 480 aa putative LPS biosynthesis related flippase	Similar to Bifidobacterium longum NCC2705 conserved hypothetical membrane protein MviN family bl0651 SWALL:AAN24473 (EMBL:AE014686) (575 aa) fasta scores: E(): 5.4e-29, 32.78% id in 482 aa, and to Vibrio cholerae virulence factor MviN homolog or vc0680 SWALL:MVIN_VIBCH (SWALL:O34238) (525 aa) fasta scores: E(): 7.9e-16, 22.96% id in 527 aa conserved integral membrane protein (possible virulence factor)	
RICPR00561	Uncharacterized protein RP591	Putative uncharacterized protein	F pilin acetylation protein TraX	F pilin acetylation protein TraX	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00562	Uncharacterized protein RP592	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	
RICPR00563	ATP-DEPENDENT DNA HELICASE RECG	ATP-dependent DNA helicase protein	Residues 1 to 704 of 704 are 99 pct identical to residues 1 to 704 of a 704 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290232.1 DNA helicase, resolution of Holliday junctions, branch migration	ATP-dependent DNA helicase	RecG-like helicases	ATP-dependent DNA helicase	ATP-dependent DNA helicase RecG	conserved gene ATP dependent DNA helicase RecG	ATP-dependent DNA helicase RecG	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643 ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase	ATP-dependent DNA helicase	identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00643 ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase RecG	ATP-dependent DNA helicase recG	Mb2998c, recG, len: 737 aa. Equivalent to Rv2973c, len: 737 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 737 aa overlap). Probable recG, ATP-dependent DNA helicase (EC 3.6.1.-), equivalent to O69460|RECG_MYCLE ATP-DEPENDENT DNA HELICASE from Mycobacterium leprae (743 aa), FASTA scores: opt: 3846, E(): 0, (79.3% identity in 744 aa overlap). Also highly similar to others e.g. Q9ZBR3|SC7A1.10 PUTATIVE ATP-DEPENDENT DNA HELICASE from Streptomyces coelicolor (742 aa), FASTA scores: opt: 1249, E(): 1.1e-67, (46.2% identity in 758 aa overlap); Q9PGE8 ATP-DEPENDENT DNA HELICASE from Xylella fastidiosa (718 aa), FASTA scores: opt: 1174, E(): 3.5e-63, (42.1% identity in 539 aa overlap); P24230|RECG_ECOLI|RECG|B3652 from Escherichia coli strain K12 (693 aa), FASTA scores: opt: 457, E(): 7.3e-22, (35.2% identity in 733 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE HELICASE FAMILY, RECG SUBFAMILY. PROBABLE ATP-DEPENDENT DNA HELICASE RECG	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP-dependent DNA helicase	RecG COG1200 RecG-like helicase ATP-dependent DNA helicase	IPR001410: DEAD/DEAH box helicase DNA helicase, resolution of Holliday junctions, branch migration	RecG-like helicase	similar to Salmonella typhi CT18 ATP-dependent DNA helicase ATP-dependent DNA helicase	ATP-dependent DNA recombinase RecG	similar to BRA0581, ATP-dependent DNA helicase RecG RecG, ATP-dependent DNA helicase	ATP-dependent DNA helicase	ATP-dependent DNA helicase recG	ATP-dependent DNA helicase	Putative DNA helicase	DNA recombinase	Similar to sp|Q9CMB4|RECG_PASMU sp|O34942|RECG_BACSU sp|P43809|RECG_HAEIN sp|P24230|RECG_ECOLI; Ortholog to ERGA_CDS_00310 ATP-dependent DNA helicase RecG	

RICPR00564	Phospho-N-acetylmuramoyl-pentapeptide-transferase	phospho-n-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Residues 1 to 360 of 360 are 100 pct identical to residues 1 to 360 of a 360 aa protein from Escherichia coli K12 ref: NP_414629.1 phospho-N-acetylmuramoyl-pentapeptide transferase?	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide- transferase	conserved gene phospho-N-acetylmuramoyl-pentapeptide transferase	Phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by similarity to OMNI:SA1195; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide- transferase	phospho-N-acetylmuramoyl-pentapeptide- transferase	identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445 phospho-N-acetylmuramoyl-pentapeptide- transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Phospho-N-acetylmuramoyl-pentapeptide-transferase protein	Phospho-N-acetylmuramoyl-pentapeptide-transferase	Mb2180c, murX, len: 359 aa. Equivalent to Rv2156c, len: 359 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 359 aa overlap). Probable murX, phospho-N-acetylmuramoyl-pentappeptidetransferase (EC 2.7.8 .13). FASTA best: MRAY_ECOLI P15876 (360 aa) opt: 572 z-sco re: 651.6 E(): 2.7e-29; (35.8% identity in 344 aa overlap) phospho-N-acetylmuramoyl- pentappeptidetransferase MurX	InterProMatches:IPR003524; Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963), Biological Process: peptidoglycan biosynthesis (GO:0009252), Cellular Component: membrane (GO:0016020) phospho-N-acetylmuramoyl-pentapeptide transferase	
RICPR00565	Probable UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	Residues 1 to 452 of 452 are 99 pct identical to residues 1 to 452 of a 452 aa protein from Escherichia coli K12 ref: NP_414628.1 D-alanine:D-alanine-adding enzyme	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase	conserved gene UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	identified by similarity to EGAD:108108; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D- alanyl-D-alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanine ligase	identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D- alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	Mb2181c, murF, len: 510 aa. Equivalent to Rv2157c, len: 510 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 510 aa overlap). Probable murF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D -alanyl-D-alanyl ligase (EC 6.3.2.15) (UDP-MURNAC-PENTAPEPTIDE SYNTHETASE) also related to other Mycobacterium tuberculosis mur gene products. FASTA best: MURF_ECOLI P11880 (452 aa) opt: 515, E(): 2.6e-24, (31.9% identity in 511 aa overlap) deleted EC number 6.3.2.15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino pimelate-D-alanyl-D-alanyl ligase MurF	InterProMatches:IPR005863; Cellular Component: cytoplasm (GO:0005737), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	
RICPR00566	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	Residues 1 to 495 of 495 are 99 pct identical to residues 1 to 495 of a 495 aa protein from Escherichia coli pir: S40595 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	Similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase hypothetical protein	conserved gene UDP-N-acetylmuramyl-tripeptide synthetase MurE	Similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase hypothetical protein	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase (UDP-MurNac-tripeptide synthetase)	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2	InterProMatches:IPR005761; Cellular Component: cytoplasm (GO:0005737), Biological Process: cell wall biosynthesis (sensu Bacteria) (GO:0009273), Molecular Function: acid-D-amino acid ligase activity (GO:0016881) UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase	UDP-N-acetylmuramyl tripeptide synthase	Similar to Bacillus halodurans UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase or bh2571 SWALL:MURE_BACHD (SWALL:Q9K9S4) (486 aa) fasta scores: E(): 1.9e-61, 42.01% id in 457 aa, and to Listeria monocytogenes UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela te ligase MurE or lmo2038 SWALL:MURE_LISMO (SWALL:Q8Y5L9) (491 aa) fasta scores: E(): 4.6e-61, 39.33% id in 483 aa UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate ligase	
RICPR00567	Transcription-repair-coupling factor	Transcription repair coupling factor	Transcription-repair coupling factor	Residues 22 to 1169 of 1169 are 99 pct identical to residues 1 to 1148 of a 1148 aa protein from Escherichia coli K12 ref: NP_415632.1 transcription-repair coupling factor; mutation frequency decline	Transcription-Repair Coupling	Transcription-repair coupling factor	Mfd: transcription-repair coupling factor	Transcription-repair-coupling factor	Probable transcription-repair coupling factor protein	Transcription-repair coupling factor	Transcription-repair coupling factor	conserved gene transcription repair coupling factor	Transcription-repair coupling factor	identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 transcription-repair coupling factor	Transcription-repair coupling factor	transcription repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	Transcription-repair coupling factor	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark transcription-repair coupling factor	TrcF transcriptional repair coupling factor	Transcription-repair coupling factor	IPR001410: DEAD/DEAH box helicase transcription-repair coupling factor	similar to Salmonella typhi CT18 transcription-repair coupling factor (TrcF) transcription-repair coupling factor (TrcF)	similar to BRA0579, transcription-repair coupling factor Mfd, transcription-repair coupling factor	Putative uncharacterized protein gbs0008	
RICPR00568	Putative uncharacterized protein RP599	identified by match to protein family HMM PF03937 TPR repeat family protein	Putative uncharacterized protein	Uncharacterized conserved protein	similar to BRA0580, conserved hypothetical protein conserved hypothetical protein	Similar to rc||RC0914; Ortholog to ERGA_CDS_08640 Conserved hypothetical protein	conserved hypothetical protein similar to NP_966808.1 hypothetical protein	Similar to rc||RC0914; Ortholog to ERWE_CDS_08730 Conserved hypothetical protein	unknown	protein of unknown function DUF339	Protein of unknown function DUF339	conserved hypothetical protein	protein of unknown function DUF339	Tetratricopeptide repeat-containing protein	protein of unknown function DUF339 PFAM: protein of unknown function DUF339: (5.5e-20) KEGG: sil:SPO1266 TPR repeat family protein, ev=9e-26, 65% identity	TPR repeat protein identified by match to protein family HMM PF03937	Protein of unknown function DUF339	Hypothetical protein	TPR repeat protein identified by match to protein family HMM PF03937	protein of unknown function DUF339	Uncharacterized conserved protein	conserved hypothetical protein	protein of unknown function DUF339 PFAM: protein of unknown function DUF339 KEGG: rsp:RSP_0761 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved protein	Putative uncharacterized protein	Tetratricopeptide repeat-containing protein	
RICPR00569	Uncharacterized protein RP600	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Mb0396, -, len: 140 aa. Equivalent to Rv0390, len: 140 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 140 aa overlap). Conserved hypothetical protein, equivalent to AL023514|MLCB4_11|CAA18942.1|AL023514 hypothetical protein from Mycobacterium leprae (147 aa), FASTA scores: opt: 778, E(): 0, (79.0% identity in 138 aa overlap). Also similar to hypothetical proteins from several Rickettsia species. CONSERVED HYPOTHETICAL PROTEIN	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative rhodanese-related sulfurtransferase	Rhodanese domain protein	Rhodanese-like protein	Hypothetical protein	Rhodanese-like	Rhodanese-related sulfurtransferase	rhodanese-like protein	Sulfide dehydrogenase	Rhodanese-like protein	Rhodanese-like protein	Rhodanese-related sulfurtransferase	conserved hypothetical protein	Rhodanese domain protein	Rhodanese domain protein SMART: Rhodanese domain protein KEGG: nfa:nfa53600 hypothetical protein	Rhodanese domain protein SMART: Rhodanese domain protein KEGG: mmc:Mmcs_0525 rhodanese-like protein	rhodanese-like domain protein	Rhodanese domain protein SMART: Rhodanese domain protein KEGG: neu:NE0040 rhodanese/cdc25 fold	conserved hypothetical protein Mapped to H37Rv Rv0390	Hypothetical protein BCG_0427	Hypothetical protein	Rhodanese domain protein SMART: Rhodanese domain protein KEGG: mmc:Mmcs_0525 rhodanese-like protein	Putative rhodanese-related sulfurtransferase	Hypothetical protein	Putative uncharacterized protein	
RICPR00570	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein D	Chromosomal replication initiator protein dnaA	Residues 1 to 375 of 408 are 91 pct identical to residues 24 to 399 of a 467 aa protein from Escherichia coli K12 ref: NP_418157.1 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	chromosomal replication initiator protein	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein DnaA	conserved gene chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	identified by similarity to EGAD:14548; match to protein family HMM PF00308; match to protein family HMM TIGR00362 chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	DnaA chromosomal replication initiator protein	transcriptional regulator chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362 chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	identified by similarity to SP:P05648; match to protein family HMM PF00308; match to protein family HMM TIGR00362 chromosomal replication initiator protein DnaA	Chromosomal replication initiator protein dnaA	Chromosomal replication initiator protein dnaA	
RICPR00571	PATATIN B1	Patatin-like phospholipase split gene	Patatin b1	Patatin-like phospholipase	Patatin-like phospholipase	Patatin-like phospholipase	patatin-like protein	Putative uncharacterized protein	Truncated putative patatin b1	
RICPR00572	Uncharacterized transporter RP603	drug resistance transporter, Bcr/CflA family	MFS type drug exporter Bicyclomycin resistance protein	MFS-type bicyclomycin resistance protein	major facilitator superfamily (MFS) transporter	major facilitator superfamily MFS_1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 KEGG: bur:Bcep18194_C7622 major facilitator superfamily, (MFS_1) family	permease of the major facilitator superfamily	permease of the major facilitator superfamily	probable MFS transporter	Putative MFS transporter 12 TMHs	permease of the major facilitator superfamily	Magnaporthe grisea hypothetical protein	drug resistance transporter, Bcr/CflA family	multidrug resistance protein D KEGG: vch:VCA0267 multidrug resistance protein D	hypothetical protein	KEGG: aha:AHA_0012 multidrug resistance protein D multidrug resistance protein D	MFS-type bicyclomycin resistance protein	Bicyclomycin resistance protein	Drug resistance transporter, Bcr/CflA subfamily precursor	Putative uncharacterized protein	Major facilitator superfamily MFS_1	pseudo	Drug resistance transporter, Bcr/CflA family	Probable major facilitator superfamily (MFS) transporter	Drug resistance transporter, Bcr/CflA family	Drug resistance transporter, Bcr/CflA family	Transport protein	Drug resistance transporter, Bcr/CflA family	Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q7S6Y3]	
RICPR00573	Putative uncharacterized protein RP604	GTP-binding protein	GTP-binding protein	Residues 1 to 363 of 363 are 100 pct identical to residues 1 to 363 of a 363 aa protein from Escherichia coli O157:H7 ref: NP_309735.1 putative GTP-binding protein	GTP Binding Protein	Putative uncharacterized protein ychF	Putative uncharacterized protein	predicted GTPase, containing TGS domain	Putative GTP-binding protein	YchF protein	GTP-binding protein	GTP-binding protein	Putative gtp-binding protein	Similar to probable GTP-binding protein YchF of Escherichia coli	Similar to GTP-binding protein hypothetical protein	conserved gene GTP binding protein	Similar to GTP-binding protein hypothetical protein	GTP-binding protein	identified by match to protein family HMM TIGR00092 conserved hypothetical protein TIGR00092	GTP-binding protein	probable translation factor GTP-binding protein	probable GTP binding protein	identified by match to protein family HMM PF06071; match to protein family HMM TIGR00092 GTP-binding protein YchF	Putative uncharacterized protein	GTP-binding protein	GTP-binding protein	GTP-binding protein	GTP-BINDING PROTEIN	Predicted GTPase, probable translation factor	
RICPR00574	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Residues 1 to 194 of 194 are 99 pct identical to residues 1 to 194 of a 194 aa protein from Escherichia coli prf: 2104267B peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	similar to peptidyl-tRNA hydrolase hypothetical protein	conserved gene peptidyl tRNA hydrolase	similar to peptidyl-tRNA hydrolase hypothetical protein	Peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	Peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195; match to protein family HMM TIGR00447 peptidyl-tRNA hydrolase	
RICPR00575	50S ribosomal protein L25	50S ribosomal protein l25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	similar to 50S ribosomal subunit protein L25, RplY hypothetical protein	conserved gene 50S ribosomal protein L25, ribosomal 5S rRNA E-loop binding protein	similar to 50S ribosomal subunit protein L25, RplY hypothetical protein	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	50S ribosomal protein L25	50S ribosomal protein L25	identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731 ribosomal protein L25	50S ribosomal protein L25	Ribosomal protein L25, Ctc-form	50S ribosomal protein L25	Mb1043c, rplY, len: 215 aa. Equivalent to Rv1015c, len: 215 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 215 aa overlap). Probable rplY, 50s ribosomal protein L25, similar to RL25_ECOLI|P02426 50s ribosomal protein L25 from Escherichia coli (94 aa), FASTA scores: opt: 182, E(): 2.5e-05, (38.4% identity in 86 aa overlap) and to CTC_BACSU|P14194 general stress protein from Bacillus subtilis (203 aa), FASTA scores: opt: 260, E(): 1.4e-09, (28.4% identity in 201 aa overlap). BELONGS TO THE L25P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L25 RPLY	InterProMatches:IPR001021; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412), Molecular Function: 5S rRNA binding (GO: general stress protein	general stress protein, ribosomal protein L25 family	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L25	50S ribosomal protein L25	Ribosomal protein L25 (general stress protein Ctc)	Similar to Nitrosomonas europaea ribosomal protein L25 RplY or NE1825 SWALL:Q82TQ5 (EMBL:BX321862) (198 aa) fasta scores: E(): 1.9e-12, 29.53% id in 193 aa, and to Ralstonia solanacearum putative 50S ribosomal subunit protein L25 RplY or RSC0394 or RS03362 SWALL:Q8Y2E2 (EMBL:AL646059) (206 aa) fasta scores: E(): 1.9e-12, 29.31% id in 174 aa putative 50S ribosomal protein L25	50S ribosomal protein L25	similar to BR1535, ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	50S ribosomal protein L25	50S ribosomal protein L25	
RICPR00576	Putative uncharacterized protein RP607	Organic radical activating enzymes	Probable organic radical activating enzyme protein	Similar to unknown protein YgcF of Escherichia coli	putative Organic radical activating enzymes	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative coenzyme PQQ synthesis protein, nitrogenase iron-molybdenum domain	COG0602 organic radical activating enzyme	queuosine biosynthesis protein QueE	Organic radical activating enzyme	Putative organic radical activating enzymes	Hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Organic radical activating enzymes	Code: O; COG: COG0602 conserved hypothetical protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 11222759, 14660578; Product type e : enzyme queC protein	Code: O; COG: COG0602 conserved hypothetical protein	conserved hypothetical protein	Organic radical activating enzyme-like protein	conserved hypothetical protein	Organic radical activating enzymes-like	Organic radical activating enzymes	Organic radical activating enzyme COG0602	Code: O; COG: COG0602; orf conserved hypothetical protein	Organic radical activating enzymes-like	Radical SAM	Fe-S protein, radical SAM family	GntS	
RICPR00577	50S ribosomal protein L35	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 ribosomal protein L35	50S ribosomal protein L35	Ribosomal protein L35	similar to BR2119, ribosomal protein L35 RpmI, ribosomal protein L35	50S ribosomal protein L35	Putative 50S ribosomal protein L35	Similar to sp|Q8YE70|RL35_BRUME sp|Q92ST2|RL35_RHIME sp|Q9A9E2|RL35_CAUCR sp|Q98CP7|RL35_RHILO; Ortholog to ERGA_CDS_01300 50S ribosomal protein L35	COG0291 RpmI ribosomal protein L35; go_component: 0005840 ribosomal protein L35	50S ribosomal protein L35	LSU ribosomal protein L35P	50S ribosomal protein L35	Similar to sp|Q8YE70|RL35_BRUME sp|Q92ST2|RL35_RHIME sp|Q9A9E2|RL35_CAUCR sp|Q98CP7|RL35_RHILO; Ortholog to ERWE_CDS_01340 50S ribosomal protein L35	50S ribosomal protein L35	Best Blastp Hit: pir||E81165 50S ribosomal protein L35 NMB0722 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225949|gb|AAF41135.1| (AE002427) 50S ribosomal protein L35 [Neisseria meningitidis MC58] >gi|7379636|emb|CAB84203.1| (AL162754) putative 50S ribosomal protein L35 [Neisseria meningitidis] COG0291 Ribosomal protein L35 putative 50s ribosomal protein L35	Ribosomal protein L35	Ribosomal protein L35	Ribosomal protein L35	COG0291, RpmI, Ribosomal protein L35. pfam01632, Ribosomal_L35p. Ribosomal protein L35	50S ribosomal protein L35	ribosomal protein L35 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001	ribosomal protein L35	ribosomal protein L35	50S ribosomal protein L35	putative 50S ribosomal protein L35 similarity:fasta; with=UniProt:RL35_THETH (EMBL:TTH224858); Thermus thermophilus.; rpmI; 50S ribosomal protein L35.; length=65; id 52.381; 63 aa overlap; query 2-64; subject 1-62 similarity:fasta; with=UniProt:RL35_RHIME (EMBL:SME591783); Rhizobium meliloti (Sinorhizobium meliloti).; rpmI; 50S ribosomal protein L35.; length=67; id 95.522; 67 aa overlap; query 1-67; subject 1-67	Ribosomal protein L35	ribosomal protein L35 PFAM: ribosomal protein L35: (2e-14) KEGG: sil:SPO3599 ribosomal protein L35, ev=4e-29, 95% identity	ribosomal protein L35	ribosomal protein L35 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001	
RICPR00578	50S ribosomal protein L20	50S ribosomal protein l20	50S ribosomal protein L20	Residues 1 to 118 of 118 are 99 pct identical to residues 1 to 118 of a 118 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288150.1 50S ribosomal subunit protein L20, and regulator	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50s ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	conserved gene 50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	50S ribosomal protein L20	LSU ribosomal protein L20P	50S ribosomal protein L20	identified by similarity to SP:P02421; match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	50S ribosomal protein L20	identified by similarity to SP:P13070; match to protein family HMM PF00453; match to protein family HMM TIGR01032 ribosomal protein L20	
RICPR00580	Ribonuclease P protein component	Ribonuclease P	Ribonuclease P	Ribonuclease P	Ribonuclease P protein component	Ribonuclease P	ribonuclease P protein component	Ribonuclease P	Ribonuclease P protein component	Ribonuclease P protein component	
RICPR00581	Uncharacterized protein RP612	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	30S ribosomal protein S21	



RICPR00582	Putative sensor histidine kinase ntrY-like	Sensor protein	Sensor protein srrB	identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229 nitrogen regulation protein ntrY	Sensor protein	similar to BR1116, nitrogen regulation protein NtrY NtrY, nitrogen regulation protein NtrY	Sensor protein	staphylococcal respiratory response protein SrrB	Ortholog of S. aureus MRSA252 (BX571856) SAR1567 sensor kinase protein	staphylococcal respiratory response protein SrrB	Similar to sp|P45675|NTRY_AZOBR sp|Q04850|NTRY_AZOCA; Ortholog to ERGA_CDS_07230 Nitrogen regulation protein NtrY	COG0347 GlnK nitrogen regulatory protein PII similar to NP_420550.1; go_function: 0005524 nitrogen regulation protein	involved in nitrogen fixation and metabolism regulation; COG5000 two-component signal transduction histidine kinase	Sensory transduction histidine kinase	Nitrogen assimilation regulatory protein NtrY	nitrogen regulation protein ntrY	Similar to sp|P45675|NTRY_AZOBR sp|Q04850|NTRY_AZOCA; Ortholog to ERWE_CDS_07310 Nitrogen regulation protein NtrY	ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal	Two-component regulatory system family, sensor kinase protein. Previously sequenced as Staphylococcus aureus staphylococcal respiratory response protein (histidine kinase) SrrB TR:Q9L523 (EMBL:AF260326) (583 aa) fasta scores: E(): 2.7e-205, 99.828% id in 583 aa. Similar to Bacillus subtilis sensor protein ResE SW:RESE_BACSU (P35164) (589 aa) fasta scores: E(): 1.4e-59, 33.893% id in 596 aa. Possible alternative translational start site sensor kinase protein	Nitrogen regulation protein NtrY	Nitrogen regulatory signal transduction histidine kinase NtrY	ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal	identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 sensor histidine kinase SrrB	PAS domain:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor prot...	Signal transduction histidine kinase, NtrY	Sensor protein	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation.  NtrY represents the transmembrane 'sensor' protein element in a two-component regulatory system in Azorhizobium caulinodans. cd00130, PAS, PAS dom Citation: Pawlowski K, Klosse U, de Bruijn FJ. (1991) Mol Gen Genet. 231(1):124-38 PMID: 1661370; PMID: 12045829; PMID: 11952125 Nitrogen regulation protein, NtrY, Signal transduction histidine kinase	Sensor protein	multi-sensor signal transduction histidine kinase	
RICPR00583	30S ribosomal protein S21	identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030 ribosomal protein S21	similar to BRA0966, ribosomal protein S21 ribosomal protein S21	30S ribosomal protein S21	COG0828 ribosomal protein S21	SSU ribosomal protein S21P	30S ribosomal protein S21	Ribosomal protein S21	30S ribosomal protein S21	Gene neighborhood linkage with TetR-like RSP_0717; Similar but separate RpsU proteins are linked with the macromolecular synthesis operon. Citation: PMID: 9371454J Bacteriol. 1997 Nov;179(22):7063-71. 30S ribosomal protein S21 (RpsU)	30S ribosomal protein S21	ribosomal protein S21	30S ribosomal protein S21	Ribosomal protein S21	ribosomal protein S21 PFAM: ribosomal protein S21: (3.6e-05) KEGG: sil:SPO0229 ribosomal protein S21, ev=3e-30, 98% identity	Ribosomal protein S21	ribosomal protein S21	Ribosomal protein S21	ribosomal protein S21 COG0828 Ribosomal protein S21	30S ribosomal protein S21	ribosomal protein S21 PFAM: ribosomal protein S21 KEGG: rsp:RSP_0718 30S ribosomal protein S21	ribosomal protein S21 TIGRFAM: ribosomal protein S21 KEGG: sme:SMc03934 30S ribosomal protein S21	ribosomal protein S21 PFAM: ribosomal protein S21 KEGG: rpc:RPC_3962 ribosomal protein S21	Ribosomal protein S21	ribosomal protein S21 PFAM: ribosomal protein S21 KEGG: rsp:RSP_0718 30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	30S ribosomal protein S21	Ribosomal protein S21	
RICPR00584	Putative uncharacterized protein RP616	identified by similarity to GB:AAK25258.1 conserved hypothetical protein	Transcriptional regulator, tetR family	conserved hypothetical protein similar to NP_966600.1 hypothetical protein	COG5590 conserved hypothetical protein	unknown	conserved hypothetical protein	hypothetical protein	RpsU-divergently transcribed	RpsU-divergently transcribed	unknown	conserved hypothetical protein	RpsU-divergently transcribed TIGRFAM: RpsU-divergently transcribed: (2.1e-62) PFAM: COQ9: (2e-39) KEGG: sil:SPO0230 hypothetical protein, ev=2e-85, 69% identity	transcript_id=ENSGACT00000002890	RpsU-divergently transcribed protein	Hypothetical protein	hypothetical protein COG5590 Uncharacterized conserved protein	transcript_id=ENSEEUT00000003497	Uncharacterized conserved protein	rpsU-divergently transcribed protein TIGRFAM: rpsU-divergently transcribed protein PFAM: COQ9 domain protein KEGG: sil:SPO0230 hypothetical protein	conserved hypothetical protein	rpsU-divergently transcribed protein TIGRFAM: rpsU-divergently transcribed protein PFAM: COQ9 domain protein KEGG: rsp:RSP_0717 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	RpsU-divergently transcribed protein	Putative uncharacterized protein	Putative uncharacterized protein	RpsU-divergently transcribed protein	
RICPR00585	Isoleucyl-tRNA synthetase	isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Mb1563, ileS, len: 1041 aa. Equivalent to Rv1536, len: 1041 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 1041 aa overlap). ileS, Isoleucyl-tRNA synthetase (EC 6.1.1.5) , similar to several e.g. SYIC_YEAST P09436 isoleucyl-tRNA synthetase (1072 aa), FASTA scores: opt: 1447, E(): 0, (37.8% identity in 1072 aa overlap); contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature.  BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. isoleucyl-tRNA synthetase ileS	Isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Similar to Borrelia burgdorferi isoleucyl-tRNA synthetase IleS or BB0833 SWALL:SYI_BORBU (SWALL:O51773) (1042 aa) fasta scores: E(): 2.1e-194, 45.33% id in 1008 aa, and to Staphylococcus aureus isoleucyl-tRNA synthetase, mupirocin resistant MupR SWALL:SYIP_STAAU (SWALL:P41368) (1024 aa) fasta scores: E(): 1.5e-138, 37.83% id in 999 aa isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase	Similar to sp|Q9ZCU4|SYI_RICPR sp|Q10765|SYI_MYCTU sp|Q9X7E5|SYI_MYCLE sp|O51773|SYI_BORBU; Ortholog to ERGA_CDS_05000 Isoleucyl-tRNA synthetase	isoleucine-tRNA synthetase	COG0060 IleS isoleucyl-tRNA synthetase; go_process: 0006418 isoleucine-tRNA ligase	, predicted protein, len = 1099 aa, isoleucine tRNA synthetase; predicted pI = 7.0894; high similarity to Q9BMG3, isoleucine tRNA synthetase (EC 6.1.1.5) (1087 aa, Leishmania donovani, EMBL: AF326935, AAG49529); Fasta scores: E():0 isoleucyl-tRNA synthetase, putative	Similar to Methanobacterium thermoautotrophicum isoleucyl-tRNA synthetase IleS SWALL:SYI_METTM (SWALL:P26499) (1044 aa) fasta scores: E(): 1.8e-56, 32.12% id in 1133 aa, and to Bacteroides thetaiotaomicron isoleucyl-tRNA synthetase BT0806 SWALL:AAO75913 (EMBL:AE016929) (1162 aa) fasta scores: E(): 0, 88.47% id in 1163 aa isoleucyl-tRNA synthetase	Similar to Mycobacterium tuberculosis isoleucyl-tRNA synthetase IleS or Rv1536 or mt1587 or mtcy48.29C SWALL:SYI_MYCTU (SWALL:Q10765) (1041 aa) fasta scores: E(): 0, 52.58% id in 1046 aa, and to Methanosarcina barkeri isoleucyl-tRNA synthetase IleS SWALL:Q9P9L9 (EMBL:AF208389) (1058 aa) fasta scores: E(): 3.3e-65, 30.23% id in 1065 aa class I tRNA synthetase (I, L, M and V)	go_component: cytosol [goid 0005829]; go_function: isoleucine-tRNA ligase activity [goid 0004822]; go_process: protein biosynthesis [goid 0006412] isoleucyl-tRNA synthetase ,cytoplasmic	isoleucine--tRNA ligase (isoleucyl-tRNA synthetase)	Isoleucyl-tRNA synthetase	similar to Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5) (Isoleucine--tRNAligase) (IleRS) (IRS).  (Swiss-Prot:P41252) (Homo sapiens;); go_function: isoleucine-tRNA ligase activity [goid 0004822]; go_function: ATP binding [goid 0005524]; go_process: isoleucyl-tRNA aminoacylation [goid 0006428] isoleucyl-tRNA synthetase, putative	Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine-- tRNA ligase) (IleRS).	Similar to sp|Q9ZCU4|SYI_RICPR sp|Q10765|SYI_MYCTU sp|Q9X7E5|SYI_MYCLE sp|O51773|SYI_BORBU; Ortholog to ERWE_CDS_05090 Isoleucyl-tRNA synthetase	identified by similarity to SP:P56690; match to protein family HMM TIGR00392 isoleucyl-tRNA synthetase	isoleucyl-tRNA synthetase, class Ia	Isoleucyl-tRNA synthetase	isoleucine--tRNA ligase (EC 6.1.1.5)	isoleucyl-tRNA synthetase	Isoleucyl-tRNA synthetase, class Ia	isoleucyl-tRNA synthetase	
RICPR00586	PROPIONYL-COA CARBOXYLASE ALPHA CHAIN	identified by similarity to SP:P14882; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 propionyl-CoA carboxylase, alpha subunit	Acetyl-CoA carboxylase, biotin carboxylase	Acetyl-/propionyl-coenzyme A carboxylase alpha chain	Mb2529c, accA1, len: 654 aa. Equivalent to Rv2501c, len: 654 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 654 aa overlap). Probable accA1 (alternate gene name: bccA), acetyl-/propionyl-coenzyme A carboxylase (alpha subunit) [INCLUDES: BIOTIN CARBOXYLASE (EC 6.3.4.14); BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)], similar to others eg Q9L076|FABG from Streptomyces coelicolor (646 aa), FASTA scores: opt: 2071, E(): 1e-113, (57.8% identity in 659 aa overlap); AAK24139|Q9A6C6|CC2168 from Caulobacter crescentus (654 aa), FASTA scores: opt: 1754, E(): 3.7e-95, (47.2% identity in 661 aa overlap); etc. Contains PS00188 Biotin-requiring enzymes attachment site, PS00866 Carbamoyl-phosphate synthase subdomain signature 1, and PS00867 Carbamoyl-phosphate synthase subdomain signature 2. PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN CARBOXYL CARRIER PROTEIN (BCCP)	biotin carboxylase	Acetyl/propionyl-CoA carboxylase, alpha subunit	Similar to rp||pccA sp|P05165|PCCA_HUMAN sp|P14882|PCCA_RAT; Ortholog to ERGA_CDS_05470 Propionyl-CoA carboxylase alpha chain	COG1038 PycA pyruvate carboxylase, C-terminal domain/subunit propionyl-CoA carboxylase alpha chain precursor	carboxylase, putative	Propionyl-CoA carboxylase, alpha subunit	propionyl-CoA carboxylase	Similar to rp||pccA sp|P05165|PCCA_HUMAN sp|P14882|PCCA_RAT; Ortholog to ERWE_CDS_05580 Propionyl-CoA carboxylase alpha chain	Acetyl-CoA carboxylase, biotin carboxylase	Acetyl-CoA carboxylase, biotin carboxylase	Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate synthetase large chain, N-terminal:Biotincarboxylase,C-terminal	ATP + PROPANOYL-COA + HCO(3)(-) = ADP + PHOSPHATE + (S)-METHYLMALONYL-COA. Cofactor: Biotin Citation: C.G.  Thornton et al. J Bacteriol. 1993 Sep;175(17):5301-8.  PMID8366018. Propionyl-CoA carboxylase alpha subunit	Carbamoyl-phosphate synthase L chain, ATP-binding	propionyl-CoA carboxylase, alpha subunit identified by similarity to GB:AAL66189.1; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786	propionyl Coenzyme A carboxylase, alpha polypeptide [Source:HGNC Symbol;Acc:8653]	transcript_id=ENSOCUT00000017238	Carbamoyl-phosphate synthase L chain, ATP-binding	Acetyl-CoA carboxylase, biotin carboxylase	Biotin carboxylase	Carbamoyl-phosphate synthase L chain, ATP-binding PFAM: biotin/lipoyl attachment: (2.7e-18) ATP-dependent carboxylate-amine ligase-like, ATP-grasp: (0.00035) Carbamoyl-phosphate synthase L chain, ATP-binding: (5.6e-115) Carbamoyl-phosphate synthetase large chain-like: (1.6e-48) biotin carboxylase-like: (6e-56) RimK-like ATP-grasp: (0.00016) KEGG: sil:SPO1101 propionyl-CoA carboxylase, alpha subunit, ev=0.0, 86% identity	propionyl-CoA carboxylase, alpha subunit identified by similarity to SP:P05165; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786	transcript_id=ENSGACT00000003067	Carbamoyl-phosphate synthase L chain, ATP-binding	
RICPR00587	PROPIONYL-COA CARBOXYLASE BETA CHAIN	similar to propionyl-CoA carboxylase beta chain hypothetical protein	conserved gene acetyl CoA carboxylase alpha subunit	similar to propionyl-CoA carboxylase beta chain hypothetical protein	identified by similarity to PIR:T42208; match to protein family HMM PF01039 propionyl-CoA carboxylase, beta subunit	AccD5	Propionyl-CoA carboxylase beta chain protein	Probable propionyl-CoA carboxylase beta chain 5	Mb3308, accD5, len: 548 aa. Equivalent to Rv3280, len: 548 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 548 aa overlap). Probable accD5, propyonyl-CoA carboxylase beta chain 5 (EC 6.4.1.3), equivalent to P53002|PCCB_MYCLE|ACCD5|ML0731|B1308_C1_125 PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHAIN 5 from Mycobacterium leprae (549 aa), FASTA scores: opt: 3241, E(): 4e-192, (88.7% identity in 549 aa overlap). Also similar to many e.g. O87201|DTSR2 DTSR2 PROTEIN INVOLVED IN GLUTAMATE PRODUCTION from orynebacterium glutamicum (Brevibacterium flavum) (537 aa), FASTA scores: opt: 2604, E(): 6.9e-153, (74.1% identity in 529 aa overlap) (see first citation below); P53003|PCCB_SACER from Saccharopolyspora erythraea (Streptomyces erythraeus) (546 aa), FASTA scores: opt: 2466, E(): 2.2e-144, (70.2% identity in 530 aa overlap); O88155|DTSR1 DTSR1 PROTEIN from Corynebacterium glutamicum (Brevibacterium flavum) (543 aa), FASTA scores: opt: 2375, E(): 8.8e-139, (67.1% identity in 529 aa overlap (see citation below); Q9X4K7|PCCB from Streptomyces coelicolor (530 aa), FASTA scores: opt: 2360, E(): 7.3e-138, (67.9% identity in 533 aa overlap); O24789|MXPCCB from Myxococcus xanthus (524 aa), FASTA scores: opt: 1868, E(): 1.5e-107, (56.85% identity in 524 aa overlap); etc. Also similar with METHYLMALONYL-COA DECARBOXYLASES e.g. O59018|PH1287 from Pyrococcus horikoshii (522 aa), FASTA scores: opt: 1841, E(): 6.7e-106, (54.15% identity in 528 aa overlap). Also similarity with MTCY427.28 (43.8% identity in 434 aa overlap). BELONGS TO THE ACCD/PCCB FAMILY. PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHAIN 5 ACCD5 (PCCASE) (PROPANOYL-COA:CARBON DIOXIDE LIGASE)	propionyl-CoA carboxylase beta chain	Propionyl-CoA carboxylase, alpha subunit	Acetyl-CoA carboxylase, carboxyltransferase component	identified by similarity to GB:AAL51982.1; GB:AAL44398.1; propionlyl-CoA carboxylase propionlyl-CoA carboxylase	Similar to sp|P05166|PCCB_HUMAN sp|P79384|PCCB_PIG sp|P07633|PCCB_RAT sp|P53003|PCCB_SACER rp||pccB; Ortholog to ERGA_CDS_04570 Similar to human Propionyl-CoA carboxylase beta chain, mitochondrial precursor	propionyl-CoA carboxylase beta chain	similar to NP_220986.1 propionyl-COA carboxylase beta chain precursor	CHR28_tmp.1780, predicted protein, len = 523 aa, propionyl-coa carboxylase beta chain protein; predicted pI = 8.7283; good similarity to several propionyl-coa carboxylase proteins; contains a carboxyl transferase domain domain propionyl-coa carboxylase beta chain, putative	Similar to Saccharopolyspora erythraea propionyl-CoA carboxylase beta chain PccB SWALL:PCCB_SACER (SWALL:P53003) (546 aa) fasta scores: E(): 8.9e-123, 62.5% id in 520 aa propionyl-CoA carboxylase beta chain	Propionyl-CoA carboxylase beta subunit	Methylmalonyl-CoA decarboxylase, alpha subunit	Similar to sp|P05166|PCCB_HUMAN sp|P79384|PCCB_PIG sp|P07633|PCCB_RAT sp|P53003|PCCB_SACER rp||pccB; Ortholog to ERWE_CDS_04670 Similar to human Propionyl-CoA carboxylase beta chain, mitochondrial precursor	identified by match to protein family HMM PF01039 acyl CoA biotin-dependant carboxyltransferase	Carboxyl transferase	Propionyl-CoA carboxylase beta chain precursor	carboxyl transferase	acyl CoA biotin-dependant carboxyltransferase	Carboxyl transferase	Carboxyl transferase family:Acetyl-CoA carboxylase carboxyl transferase, beta subunit	Citation: C.G. Thornton et al. J Bactreiol. 1993.  Sep:175(17):5301-8. pmid8366018. propionyl-CoA carboxylase beta chain	
RICPR00588	2-ACYLGLYCEROPHOSPHOETHANOLAMINE ACYLTRANSFERASE	pseudo	identified by similarity to SP:P31119; match to protein family HMM PF00501; match to protein family HMM PF01553 2-acylglycerophosphoethanolamine acyltransferase , acyl-acyl carrier protein synthetase	Putative uncharacterized protein	Bifunctional protein aas	AMP-dependent synthetase and ligase:Phospholipid/glycerol acyltransferase	2-acylglycerophosphoethanolamine acyltransferase	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	AMP-dependent synthetase and ligase	2-acylglycerophosphoethanolamine acyltransferase	putative transmembrane AMP-binding acyltransferase family protein N-terminus to codon 610 is similar to Pseudomonas syringae (pv. tomato) acyltransferase family protein.  UniProt:Q87YA2 (624 aa), and similar from codon 425 to the C-terminus to Escherichia coli Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase (ec 2.3.1.40) (acyl-[acyl-carrier-protein]-- phospholipid o-acyltransferase) (2-acyl-gpe acyltransferase) UniProt:AAS_ECOLI (EMBL:AY625100) (719 aa), and similar to the entire protein of Rhizobium loti (Mesorhizobium loti) 2-acylglycerophosphoethanolamine acyltransferase.  UniProt:Q98BS2 (1137 aa). Possible fusion protein. similarity:fasta; with=UniProt:Q87YA2; Pseudomonas syringae (pv. tomato).; Acyltransferase family protein.; length=624; id 31.870; 615 aa overlap; query 2-606; subject 6-618 similarity:fasta; with=UniProt:AAS_ECOLI (EMBL:AY625100); Escherichia coli.; aas; AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) (Acyl-[acyl-carrier-protein]-- phospholipid O-acyltransferase) (2-acyl-GPE acyltransferase); Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20) (Long-chain-fatty- acid--[acyl-carrier-protein] ligase) (Acyl-ACP synthetase)].; length=719; id 45.897; 719 aa overlap; query 425-1129; subject 5-719 similarity:fasta; with=UniProt:Q98BS2; Rhizobium loti (Mesorhizobium loti).; 2-acylglycerophosphoethanolamine acyltransferase.; length=1137; id 71.847; 1126 aa overlap; query 1-1124; subject 5-1129	AMP-dependent synthetase and ligase	long-chain-fatty-acid--acyl-carrier protein ligase protein similar to mlr5451 [Mesorhizobium loti] and bll2324 [Bradyrhizobium japonicum] and aas (RC0962) [Rickettsiaconorii] Similar to swissprot:Q98BS2 Putative location:bacterial inner membrane Psort-Score: 0.5501; go_function: transferase activity [goid 0016740]; go_function: catalytic activity [goid 0003824]; go_function: acyltransferase activity [goid 0008415]; go_process: metabolism [goid 0008152]	Aas bifunctional protein	Integral membrane protein	conserved hypothetical protein	AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1 KEGG: aba:Acid345_4052 AMP-dependent synthetase and ligase	Acyl-CoA synthetase/AMP-acid ligase II	bifunctional Aas protein AAS bifunctional protein [Includes: 2-acylglycerophosphoethanolamine acyltransferase (2-acyl-GPE acyltransferase); Acyl-acyl carrier protein synthetase (Acyl-ACP synthetase)]. PLAYS A ROLE IN LYSOPHOSPHOLIPID ACYLATION. TRANSFERS FATTY ACIDS TO THE 1-POSITION VIA AN ENZYME-BOUND ACYL-ACP INTERMEDIATE IN THE PRESENCE OF ATP AND MG(2+). ITS PHYSIOLOGICAL FUNCTION IS TO REGENERATE PTDETN FROM 2-ACYL-GPE FORMED BY TRANSACYLATION REACTIONS OR DEGRADATION BY PHOSPHOLIPASE A1, TREMBL:Q8FEA6 (52% identity); SWISSPROT:P31119 (52% identity). Pfam (PF00501): AMP-binding enzyme. Pfam (PF01553): Acyltransferase. TIGRFAM (TIGR00530): 1-acyl-sn-glycerol-3-phosphate acyltransferases. SignalP reporting signal peptide. High confidence in function and specificity	AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1 KEGG: pca:Pcar_2776 2-acyl-glycerophospho-ethanolamine acyltransferase	AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1 KEGG: mag:amb2972 acyl-CoA synthetase/AMP-acid ligase II	Aas bifunctional protein precursor	2-acylglycerophosphoethanolamine acyltransferase , acyl-acyl carrier protein synthetase identified by match to protein family HMM PF00501; match to protein family HMM PF01553; match to protein family HMM PF07690	Bifunctional protein	Aas bifunctional protein	2-acylglycerophosphoethanolamine acyltransferase  ,Acyl-ACP synthetase	2-acylglycerophosphoethanolamine acyltransferase	2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase	Acylglycerophosphoethanolamine acyltransferase	
RICPR00589	Putative uncharacterized protein RP621	Putative uncharacterized protein	Mn2+/Zn2+ ABC transporter, permease protein	Similar to sp|P57402|ZNUB_BUCAI sp|P44691|ZNUB_HAEIN sp|P39832|ZNUB_ECOLI sp|Q8K9M7|ZNUB_BUCAP; Ortholog to ERGA_CDS_05210 High-affinity zinc uptake system membrane protein znuB	ABC transporter membrane-spanning permease - Zinc (Zn2+) transport	ABC-type Mn2+/Zn2+ transport system, permease component	ABC transporter, permease, family 3; possible zinc transporter	putative ABC transport system, permease protein	Similar to sp|P57402|ZNUB_BUCAI sp|P44691|ZNUB_HAEIN sp|P39832|ZNUB_ECOLI sp|Q8K9M7|ZNUB_BUCAP; Ortholog to ERWE_CDS_05310 High-affinity zinc uptake system membrane protein znuB	identified by match to protein family HMM PF00950 cation ABC transporter, permease protein	identified by match to protein family HMM PF00950 cation ABC transporter, permease protein	ABC-3	Zinc/manganese ABC transporter permease protein	ABC-type transport system permease protein (probable substrates zinc/manganese/metal ions) 2	ABC transporter, family 3	ABC-3	ABC-3	ABC 3 transport family protein	Zinc/manganese ABC transporter permease protein	ABC-3 transporter component	Manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein	putative cation ABC transporter, permease protein identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950	ABC-3	ABC-3	ABC-3 protein PFAM: ABC-3 protein KEGG: cch:Cag_1676 ABC 3 transport family protein	cation ABC transporter, permease protein identified by match to protein family HMM PF00950; match to protein family HMM PF01032	ABC-type Mn2+/Zn2+ transport system, permease component identified by match to protein family HMM PF00950; match to protein family HMM PF02653	ABC-type Mn2+/Zn2+ transport systems, permease component	Hypothetical protein	
RICPR00590	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	UbiG protein	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	conserved gene 3-demethylubiquinone-9 3-methyltransferase UbiG	3-demethylubiquinone-9 3-methyltransferase	identified by similarity to SP:P17993; match to protein family HMM TIGR01983 3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-demethylubiquinone-9 3-methyltransferase	IPR000051: SAM (and some other nucleotide) binding motif; IPR001601: Generic methyltransferase 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase	similar to Salmonella typhi CT18 3-demethylubiquinone-9 3-methyltransferase 3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	Similar to sp|Q9ZCT9|UBIG_RICPR sp|Q9JXI7|UBIG_NEIMB sp|Q98G87|UBIG_RHILO sp|Q9JWE6|UBIG_NEIMA; Ortholog to ERGA_CDS_04210 3-demethylubiquinone-9 3-methyltransferase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase	3-demethylubiquinone-9 3-methyltransferase	COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase	3-demethylubiquinone 3-methyltransferase	3-demethylubiquinone-9 3-methyltransferase	Similar to Q87ND5 3-demethylubiquinone-9 3-methyltransferase from Vibrio parahaemolyticus (235 aa).  FASTA: opt: 804 Z-score: 940.2 E(): 1.6e-44 50.655 identity in 229 aa overlap 3-demethylubiquinone-9 3-methyltransferase	Demethylubiquinone methylase	3-demethylubiquinone-9 3-methyltransferase	
RICPR00591	Glutamyl-tRNA synthetase 2	Residues 1 to 471 of 471 are 99 pct identical to residues 1 to 471 of a 471 aa protein from Escherichia coli K12 ref: NP_416899.1 glutamate tRNA synthetase, catalytic subunit	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase, catalytic subunit	conserved gene glutamate tRNA synthetase catalytic subunit	Glutamyl-tRNA synthetase, catalytic subunit	glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	identified by similarity to SP:P04805; match to protein family HMM PF00749; match to protein family HMM TIGR00464 glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase protein	Glutamyl-tRNA synthetase	Mb3016c, gltS, len: 490 aa. Equivalent to Rv2992c, len: 490 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 490 aa overlap). Probable gltS (alternate gene name: gltX), glutamyl-tRNA synthase (EC 6.1.1.17), equivalent to O33120|SYE_MYCLE GLUTAMYL-TRNA SYNTHETASE from Mycobacterium leprae (502 aa), FASTA scores: opt: 2660, E(): 2.3e-163, (81.35% identity in 488 aa overlap). Also highly similar to others e.g.  O86528|SYE_STRCO from Streptomyces coelicolor (494 aa), FASTA scores: opt: 1777, E(): 1.4e-106, (57.45% identity in 484 aa overlap); P22250|SYE_BACSU from Bacillus subtilis (483 aa), FASTA scores: opt: 1099, E(): 5.4e-63, (38.45% identity in 489 aa overlap); O51345|SYE_BORBU|GLTX|BB0372 from Borrelia burgdorferi (Lyme disease spirochete) (490 aa), FASTA scores: opt: 1009, E(): 3.3e-57, (34.85% identity in 491 aa overlap); etc. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY.  TBparse score is 0.891. PROBABLE GLUTAMYL-TRNA SYNTHETASE GLTS (GLUTAMATE--TRNA LIGASE) (GLUTAMYL-TRNA SYNTHASE) (GLURS)	glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	Glutamyl-tRNA synthetase	IPR000924: Glutamyl-tRNA synthetase, class Ic; IPR001412: Aminoacyl-tRNA synthetase, class I glutamate tRNA synthetase, catalytic subunit	Glutamyl-and glutaminyl-tRNA synthetase	


RICPR00592	60 kDa chaperonin	Chaperonin protein groEL	60 kDa chaperonin	Residues 1 to 548 of 548 are 100 pct identical to residues 1 to 548 of a 548 aa protein from Escherichia coli O157:H7 ref: NP_313151.1 chaperonin GroEL	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin	60 kDa chaperonin (Protein Cpn60)(groEL protein)(Heat shock protein B).	60 kDa chaperonin	identified by similarity to SP:Q08854; match to protein family HMM PF00118 chaperonin, 60 kDa	60 kDa chaperonin GROEL	identified by similarity to SP:P20110; match to protein family HMM PF00118 chaperonin, 60 kDa	heat shock protein, chaperonin, 60 kDa	60 kDa chaperonin	60 kDa chaperonin	identified by match to protein family HMM PF00118 co-chaperonin GroEL	60 kDa chaperonin	60 kDa chaperonin 2	Mb0448, groEL2, len: 540 aa. Equivalent to Rv0440, len: 540 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 540 aa overlap). groEL2 (alternate gene names: groL2, groEL-2, hsp65, hsp60), 60 kDa chaperonin 2 (see first citation below). PURIFIED 65 kDa ANTIGEN CAN ELICIT A STRONG DELAYED-TYPE HYPERSENSITIVITY REACTION IN EXPERIMENTAL ANIMALS INFECTED WITH M.  TUBERCULOSIS. THIS PROTEIN IS ONE OF THE MAJOR IMMUNOREACTIVE PROTEINS OF THE MYCOBACTERIA. THIS ANTIGEN CONTAINS EPITOPES THAT ARE COMMON TO VARIOUS SPECIES OF MYCOBACTERIA. Contains PS00296 Chaperonins cpn60 signature. BELONGS TO THE CHAPERONIN (HSP60) FAMILY. 60 KDA CHAPERONIN 2 GROEL2 (PROTEIN CPN60-2) (GROEL PROTEIN 2) (65 KDA ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A) (ANTIGEN A)	InterProMatches:IPR001844 class I heat-shock protein (chaperonin)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 60 kDa chaperonin	GroEL 60 kDa chaperonin protein Cpn60 (GroEL protein) chaperonin	60 kDa chaperonin	60 kDa chaperonin	
RICPR00593	10 kDa chaperonin	10 kDa chaperonin	Residues 1 to 97 of 97 are 100 pct identical to residues 1 to 97 of a 97 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290775.1 GroES, 10 Kd chaperone binds to Hsp60 in pres.  Mg-ATP, suppressing its ATPase activity	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	conserved gene Hsp10, 10 kDa chaperonin GroES	10 kDa chaperonin (Protein Cpn10) (groES protein) (Heat shock protein A)	10 kDa chaperonin	identified by similarity to EGAD:8115; match to protein family HMM PF00166 chaperonin, 10 kDa	identified by similarity to SP:P25969; match to protein family HMM PF00166 chaperonin, 10 kDa	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	10 kDa chaperonin	identified by similarity to SP:P48225; match to protein family HMM PF00166 chaperonin GroES	chaperonin GroES	10 kDa chaperonin	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 10kDa chaperonin	GroES 10 kDa chaperonin protein Cpn10 GroES protein cochaperonin	10 kDa chaperonin	Co-chaperonin GroES (HSP10)	similar to Salmonella typhi Ty2 GroES protein GroES protein	
RICPR00594	Ribonuclease PH	Residues 9 to 246 of 246 are 99 pct identical to residues 1 to 238 of a 238 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290223.1 RNase PH	Ribonuclease PH	Ribonuclease PH	exosome subunit Rrp41p homolog, 3'-5' exoribonuclease	Ribonuclease PH	Ribonuclease PH	Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)	conserved gene ribonuclease PH	Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase)	hypothetical protein	identified by similarity to SP:P03842; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966 ribonuclease PH	Ribonuclease PH	Ribonuclease PH	Ribonuclease PH	Ribonuclease PH	Ribonuclease PH	Mb1375, rphA, len: 259 aa. Equivalent to Rv1340, len: 259 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 259 aa overlap). Probable rphA, Ribonuclease ph (EC 2.7.7.56), highly similar to others e.g. RNPH_MYCLE|P37939 from Mycobacterium leprae (259 aa), FASTA scores: opt: 1524, E(): 0, (88.8% identity in 259 aa overlap). BELONGS TO THE RNASE PH FAMILY. PROBABLE RIBONUCLEASE RPHA (RNase PH) (tRNA nucleotidyltransferase)	ribonuclease PH	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease PH	IPR002381: Ribonuclease PH RNase PH	similar to Salmonella typhi CT18 RNase PH RNase PH	similar to BR0173, ribonuclease PH Rph, ribonuclease PH	Ribonuclease PH	Ribonuclease PH	Ribonuclease PH	ribonuclease PH	ribonuclease PH	
RICPR00595	Protein grpE	Heat shock protein (hsp-70 cofactor) grpE	Residues 1 to 197 of 197 are 100 pct identical to residues 1 to 197 of a 197 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289166.1 phage lambda replication; host DNA synthesis; heat shock protein; protein repair	Protein grpE	Protein grpE	Protein grpE	Protein grpE	Protein grpE	heat shock protein	Protein grpE	Heat-shock protein GrpE(HSP-70 cofactor)	conserved gene heat shock protein GrpE	Heat-shock protein GrpE(HSP-70 cofactor)	Protein grpE	identified by similarity to SP:P15874; match to protein family HMM PF01025 heat shock protein GrpE	GrpE	heat shock protein GrpE	identified by match to protein family HMM PF01025 co-chaperone GrpE	Protein grpE	heat shock protein, chaperonin	Protein grpE	Protein grpE	Protein grpE	identified by similarity to SP:P15874; match to protein family HMM PF01025 co-chaperone protein GrpE	heat shock protein, HSP-70 cofactor molecular chaperone GrpE	Protein grpE	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark heat shock protein GrpE	GrpE heat shock protein GrpE cochaperonin, Hsp70 cofactor	Protein grpE	
RICPR00596	UPF0118 membrane protein RP630	Permease	Probable transmembrane protein	Putative uncharacterized protein gbs1267	identified by match to PFAM protein family HMM PF01594 membrane protein, putative	Putative integral membrane protein	Hypothetical membrane spanning protein	best blastp match gb|AAK33909.1| (AE006546) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	identified by match to protein family HMM PF01594 membrane protein, putative	conserved hypothetical protein	Permease PerM homolog	Best Blastp Hit: gb|AAF41601.1| (AE002470) transporter, putative [Neisseria meningitidis MC58] COG0628 Predicted permease conserved hypothetical protein	identified by match to protein family HMM PF01594 membrane protein, putative	hypothetical membrane spanning protein	Putative transport protein	Protein of unknown function UPF0118	hypothetical membrane spanning protein	hypothetical membrane spanning protein	Permease PerM-like protein	hypothetical membrane spanning protein	Conserved hypothetical membrane protein	transport protein	hypothetical membrane spanning protein	Predicted permease	putative membrane protein identified by match to protein family HMM PF01594	Complete genome	Predicted permease	Predicted permease	Putative membrane protein	
RICPR00597	Putative uncharacterized protein RP631	identified by similarity to GB:BAC49388.1 conserved hypothetical protein	DNA replication initiation ATPase protein	Possible ATPase involved in DNA replication initiation, DnaA paralog	Putative uncharacterized protein	Similar to rc||RC0979 rp||RP631; Ortholog to ERGA_CDS_01880 Conserved hypothetical protein	conserved family - putative ATPase involved in DNA replication hypothetical protein	involved in DNA replication initiation; COG0593 ATPase	Similar to: HI1225.1, YFGE_HAEIN predicted ATPase involved in DNA replication initiation	ATPase involved in DNA replication initiation DnaA protein	DnaA-related protein	probable ATPase involved in DNA replication initiation	Similar to rc||RC0979 rp||RP631; Ortholog to ERWE_CDS_01930 Conserved hypothetical protein	ATPase involved in DNA replication initiation DnaA-like protein	conserved hypothetical protein	chromosomal DNA replication initiator-related protein	chromosomal replication initiator protein DnaA	hypothetical protein with ATP/GTP-binding site	Chromosomal replication initiator, DnaA	chromosomal replication initiator protein, DnaA	conserved hypothetical protein identified by similarity to GB:AAR38359.1	Chromosomal replication initiator, DnaA	Chromosomal replication initiator protein DnaA-like protein	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UG96_AGRT5 (EMBL:A97499); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu1143 (AGR_C_2114p).; length=242; id 71.308; 237 aa overlap; query 1-237; subject 1-237	conserved hypothetical protein RP631	Chromosomal replication initiator, DnaA PFAM: Chromosomal replication initiator, DnaA: (0.0011) KEGG: sil:SPO1118 hypothetical protein, ev=1e-77, 66% identity	conserved hypothetical protein	conserved hypothetical protein identified by similarity to GB:AAS14796.1	putative DNA replication initiation ATPase protein similar to AGR_C_2114p [Agrobacterium tumefaciens] and SMc00617 [Sinorhizobium meliloti] Similar to swissprot:Q8UG96 Putative location:bacterial cytoplasm Psort-Score: 0.2529	
RICPR00598	30S ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	30S ribosomal protein S20	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	Ribosomal protein S20	Ribosomal protein S20	30S ribosomal protein S20	similar to BR2185, ribosomal protein S20 RpsT, ribosomal protein S20	30S ribosomal protein S20	30S ribosomal protein S20	Similar to sp|P49400|RS20_CAUCR sp|Q8YED4|RS20_BRUME sp|Q98BG8|RS20_RHILO sp|Q97JK0|RS20_CLOAB; Ortholog to ERGA_CDS_00370 30S ribosomal protein S20	COG0268 RpsT ribosomal protein S20; go_component: 0005840 30S ribosomal protein S20	COG0268 ribosomal protein S20	SSU ribosomal protein S20P	identified by similarity to SP:P02378; match to protein family HMM PF01649; match to protein family HMM TIGR00029 ribosomal protein S20	ribosomal protein S20	Similar to sp|P49400|RS20_CAUCR sp|Q8YED4|RS20_BRUME sp|Q98BG8|RS20_RHILO sp|Q97JK0|RS20_CLOAB; Ortholog to ERWE_CDS_00380 30S ribosomal protein S20	30S ribosomal protein S20	Ribosomal protein S20p	Ribosomal protein S20p	Ribosomal protein S20	30S ribosomal protein S20	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 7539334, 9642084, 12051911; Product type s : structural protein 30S ribosomal subunit protein S20	Pfam: Ribosomal protein S20 Ribosomal protein S20	30S ribosomal protein S20	ribosomal protein S20	ribosomal protein S20p	
RICPR00599	50S ribosomal protein L17	50S ribosomal protein l17	50S ribosomal protein L17	Residues 1 to 127 of 127 are 100 pct identical to residues 1 to 127 of a 127 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289855.1 50S ribosomal subunit protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50s ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	conserved gene 50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059 ribosomal protein L17	50S ribosomal protein L17	LSU ribosomal protein L17P	50S ribosomal protein L17	identified by similarity to SP:P02416 ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	50S ribosomal protein L17	identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059 ribosomal protein L17	
RICPR00600	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	Residues 1 to 329 of 329 are 100 pct identical to residues 1 to 329 of a 329 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289856.1 RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	conserved gene DNA-directed RNA polymerase alpha subunit RpoA	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	identified by similarity to EGAD:15427; match to protein family HMM PF01000; match to protein family HMM PF03118 DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	RNA polymerase alpha subunit	identified by similarity to SP:P00574 DNA-directed RNA polymerase, alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha subunit	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase alpha chain	DNA-directed RNA polymerase subunit alpha	DNA-directed RNA polymerase subunit alpha	identified by similarity to SP:P20429; match to protein family HMM PF01000; match to protein family HMM PF03118 DNA-directed RNA polymerase, alpha subunit	
RICPR00601	30S ribosomal protein S11	30S ribosomal protein s11	30S ribosomal protein S11	Residues 1 to 129 of 129 are 100 pct identical to residues 1 to 129 of a 129 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289858.1 30S ribosomal subunit protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30s ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	conserved gene 30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	identified by match to protein family HMM PF00411 ribosomal protein S11	30S ribosomal protein S11	SSU ribosomal protein S11P	30S ribosomal protein S11	identified by similarity to SP:P04969 ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	30S ribosomal protein S11	identified by similarity to SP:P04969; match to protein family HMM PF00411 ribosomal protein S11	
RICPR00602	30S ribosomal protein S13	30S ribosomal protein s13	30S ribosomal protein S13	Residues 1 to 118 of 118 are 99 pct identical to residues 1 to 118 of a 118 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289859.1 30S ribosomal subunit protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30s ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	conserved gene 30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	identified by match to protein family HMM PF00416 ribosomal protein S13/S18	30S ribosomal protein S13	SSU ribosomal protein S13P	30S ribosomal protein S13	identified by similarity to SP:P80377 ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	30S ribosomal protein S13	identified by match to protein family HMM PF00416 ribosomal protein S13/S18	
RICPR00603	Adenylate kinase	Adenylate kinase	Adenylate kinase	Residues 2 to 234 of 234 are 98 pct identical to residues 1 to 233 of a 233 aa protein from Escherichia coli gb: AAB40228.1 adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	conserved gene adenylate kinase	adenylate kinase	Adenylate kinase	identified by similarity to EGAD:18647; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351 adenylate kinase	Adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	Adenylate kinase	
RICPR00604	Preprotein translocase subunit secY	Preprotein translocase secY subunit	Preprotein translocase subunit secY	Residues 1 to 443 of 443 are 100 pct identical to residues 1 to 443 of a 443 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289861.1 putative ATPase subunit of translocase	Preprotein translocase subunit secY	Preprotein translocase secY subunit	SecY protein	Preprotein translocase subunit secY	PrlA protein	Preprotein translocase subunit secY	preprotein translocase secy subunit	Preprotein translocase subunit secY	Preprotein translocase subunit secY	preprotein translocase, SecY subunit	conserved gene preprotein translocase SecY	preprotein translocase, SecY subunit	Preprotein translocase subunit secY	identified by similarity to EGAD:6542; match to protein family HMM PF00344; match to protein family HMM TIGR00967 preprotein translocase, SecY subunit	Preprotein translocase subunit secY	Protein translocase subunit secY	preprotein translocase SecY subunit	preprotein translocase, SecY subunit	Preprotein translocase subunit secY	preprotein translocase SecY subunit	Preprotein translocase SecY subunit	Preprotein translocase secY subunit	Preprotein translocase secY subunit	Preprotein translocase subunit SecY	identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967 preprotein translocase, SecY subunit	
RICPR00605	50S ribosomal protein L15	50S ribosomal protein l15	50S ribosomal protein L15	50S ribosomal protein L15	50s ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	identified by similarity to SP:P19946 ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	Mb0744, rplO, len: 146 aa. Equivalent to Rv0723, len: 146 aa, from Mycobacterium tuberculosis strain H37Rv, (99.3% identity in 146 aa overlap). Probable rplO, 50S ribosomal protein L15, equivalent to MLCB2492_23|O33002 50S RIBOSOMAL PROTEIN L15 from Mycobacterium leprae (146 aa). Also highly similar to others e.g.  P46787|RL15_STRCO|SCD31.46 50S RIBOSOMAL PROTEIN L15 from Streptomyces coelicolor (151 aa); P19946|RL15_BACSU 50s ribosomal protein L15 from Bacillus subtilis (146 aa), FASTA scores: opt: 419, E(): 6.5e-20, (51.0% identity in 145 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop), and PS00475 Ribosomal protein L15 signature. BELONGS TO THE L15P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L15 RPLO	InterProMatches:IPR005749; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934) ribosomal protein L15	COG0200 Ribosomal protein L15 50S ribosomal protein L15	50S ribosomal protein L15	Ribosomal protein L15	similar to BR1214, ribosomal protein L15 RplO, ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	50S ribosomal protein L15	Similar to sp|Q9ZCS4|RL15_RICPR sp|P04452|RL15_BACST sp|P19946|RL15_BACSU sp|O06445|RL15_STAAM; Ortholog to ERGA_CDS_06110 50S ribosomal protein L15	identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071 ribosomal protein L15	COG0200 RplO ribosomal protein L15; go_component: 0005840 50S ribosomal protein L15	COG0200 ribosomal protein L15	Similar to Bacillus subtilis 50s ribosomal protein L15 RplO or BSU01350 SWALL:RL15_BACSU (SWALL:P19946) (146 aa) fasta scores: E(): 2.4e-20, 53.47% id in 144 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L15 BT2708 SWALL:Q8A495 (EMBL:AE016937) (148 aa) fasta scores: E(): 7.6e-43, 88.51% id in 148 aa putative 50S ribosomal protein L15	Similar to Q87SZ4 Ribosomal protein L15 from Vibrio parahaemolyticus (144 aa). FASTA: opt: 614 Z-score: 753.9 E(): 4.2e-34 Smith-Waterman score: 614; 67.133 identity in 143 aa overlap 50S ribosomal protein L15	Similar to Bacillus stearothermophilus 50s ribosomal protein L15 RplO SWALL:RL15_BACST (SWALL:P04452) (146 aa) fasta scores: E(): 3.1e-15, 44.75% id in 143 aa 50s ribosomal protein L15	
RICPR00606	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308 ribosomal protein L30	LSU ribosomal protein L30P	identified by similarity to SP:Q9Z9J6 ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	Mb0743, rpmD, len: 65 aa. Equivalent to Rv0722, len: 65 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 65 aa overlap). Probable rpmD, 50S ribosomal protein L30, equivalent to O33001 RIBOSOMAL PROTEIN L30 from Mycobacterium leprae (71 aa). Also highly similar to others e.g. P46789|RL30_STRCO 50S RIBOSOMAL PROTEIN L30 from Streptomyces coelicolor (60 aa); P02430|RL30_ECOLI 50S ribosomal protein L30 from Escherichia coli (58 aa), FASTA scores: opt: 168, E(): 1.5e-13, (53.7% identity in 54 aa overlap); etc. BELONGS TO THE L30P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L30 RPMD	50S ribosomal protein L30	IPR000517: Ribosomal protein L30; IPR005996: Ribosomal protein L30, bacterial and organelle form 50S ribosomal subunit protein L30	similar to Salmonella typhi CT18 50S ribosomal subunit protein L30 50S ribosomal subunit protein L30	similar to BR1215, ribosomal protein L30 RpmD, ribosomal protein L30	50S ribosomal protein L30	identified by match to PFAM protein family HMM PF00327 ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	best blastp match gb|AAK33200.1| (AE006478) 50S ribosomal protein L30 [Streptococcus pyogenes M1 GAS] 50S ribosomal protein L30	50S Ribosomal protein L30	COG1841 ribosomal protein L30/L7E	Similar to Bacillus stearothermophilus 50S ribosomal protein L30 RpmD SWALL:RL30_BACST (SWALL:P02431) (62 aa) fasta scores: E(): 1.2e-05, 45.28% id in 53 aa, and to Bacteroides thetaiotaomicron 50S ribosomal protein L30 BT2709 SWALL:Q8A494 (EMBL:AE016937) (58 aa) fasta scores: E(): 1.3e-19, 98.27% id in 58 aa putative 50S ribosomal protein L30	Ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	50S ribosomal protein L30	
RICPR00607	30S ribosomal protein S5	30S ribosomal protein s5	30S ribosomal protein S5	Residues 1 to 167 of 167 are 100 pct identical to residues 1 to 167 of a 167 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289864.1 30S ribosomal subunit protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30s ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal subunit protein S5	conserved gene 30S ribosomal protein S5	30S ribosomal subunit protein S5	30S ribosomal protein S5	identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 ribosomal protein S5	30S ribosomal protein S5	SSU ribosomal protein S5P	30S ribosomal protein S5	identified by similarity to SP:P02356 ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	30S ribosomal protein S5	identified by similarity to SP:P21467; match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021 ribosomal protein S5	30S ribosomal protein S5	
RICPR00608	50S ribosomal protein L18	50S ribosomal protein l18	50S ribosomal protein L18	Residues 1 to 117 of 117 are 100 pct identical to residues 1 to 117 of a 117 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289865.1 50S ribosomal subunit protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal subunit protein L18	conserved gene 50S ribosomal protein L18	50S ribosomal subunit protein L18	50S ribosomal protein L18	identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060 ribosomal protein L18	50S ribosomal protein L18	LSU ribosomal protein L18P	50S ribosomal protein L18	identified by similarity to SP:P46899 ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	50S ribosomal protein L18	identified by similarity to SP:P46899; match to protein family HMM PF00861; match to protein family HMM TIGR00060 ribosomal protein L18	50S ribosomal protein L18	
RICPR00609	50S ribosomal protein L6	50S ribosomal protein l6	50S ribosomal protein L6	Residues 1 to 177 of 177 are 100 pct identical to residues 1 to 177 of a 177 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289866.1 50S ribosomal subunit protein L6	50S ribosomal protein L6	50S ribosomal protein L6	LSU ribosomal protein L6P	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50s ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal subunit protein L6	conserved gene 50S ribosomal protein L6/(L9E)	50S ribosomal subunit protein L6	50S ribosomal protein L6	identified by match to protein family HMM PF00347 ribosomal protein L6	50S ribosomal protein L6	LSU ribosomal protein L6P	50S ribosomal protein L6	identified by similarity to SP:P02391 ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	50S ribosomal protein L6	
RICPR00610	30S ribosomal protein S8	30S ribosomal protein s8	30S ribosomal protein S8	Residues 1 to 130 of 130 are 100 pct identical to residues 1 to 130 of a 130 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289867.1 30S ribosomal subunit protein S8, and regulator	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30s ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	conserved gene 30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	identified by match to protein family HMM PF00410 ribosomal protein S8	30S ribosomal protein S8	SSU ribosomal protein S8P	30S ribosomal protein S8	identified by similarity to SP:P02361 ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	30S ribosomal protein S8	identified by similarity to SP:P12879; match to protein family HMM PF00410 ribosomal protein S8	
RICPR00611	30S ribosomal protein S14	30S ribosomal protein s14	Residues 1 to 101 of 101 are 100 pct identical to residues 1 to 101 of a 101 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289868.1 30S ribosomal subunit protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	identified by similarity to EGAD:108305; match to protein family HMM PF00253 ribosomal protein S14	30S ribosomal protein S14	identified by similarity to SP:P02370 ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	30S ribosomal protein S14	Mb2082c, rpsN2, len: 101 aa. Equivalent to Rv2056c, len: 101 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 101 aa overlap). Probable rpsN2, ribosomal protein S14, similar to others e.g.  RS14_ECOLI|P02370 30S ribosomal protein S14 from Escherichia coli (100 aa), FASTA scores: opt: 290; E(): 1.7e- 13; (46.0% identity in 100 aa overlap); etc. Also similar to rpsN|Rv0717|MTCY210.36 from Mycobacterium tuberculosis, (50.0% identity in 62 aa overlap). Probable ribosomal protein S14 RpsN2	30S ribosomal protein S14; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S14	30S ribosomal protein S14 family	30S ribosomal protein S14	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 30S ribosomal protein S14	30S ribosomal protein S14	IPR001209: Ribosomal protein S14 30S ribosomal subunit protein S14	
RICPR00612	50S ribosomal protein L5	50S ribosomal protein l5	50S ribosomal protein L5	Residues 1 to 179 of 179 are 97 pct identical to residues 1 to 179 of a 179 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289869.1 50S ribosomal subunit protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50s ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	conserved gene 50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	identified by match to protein family HMM PF00281; match to protein family HMM PF00673 ribosomal protein L5	50S ribosomal protein L5	LSU ribosomal protein L5P	50S ribosomal protein L5	identified by similarity to SP:P12877 ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	50S ribosomal protein L5	identified by similarity to SP:P12877; match to protein family HMM PF00281; match to protein family HMM PF00673 ribosomal protein L5	
RICPR00613	50S ribosomal protein L24	50S ribosomal protein l24	50S ribosomal protein L24	Residues 1 to 104 of 104 are 99 pct identical to residues 1 to 104 of a 104 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289870.1 50S ribosomal subunit protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50s ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	conserved gene 50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	identified by match to protein family HMM PF00467; match to protein family HMM TIGR01079 ribosomal protein L24	50S ribosomal protein L24	LSU ribosomal protein L24P	50S ribosomal protein L24	identified by similarity to SP:P12876 ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	50S ribosomal protein L24	identified by similarity to SP:P04455; match to protein family HMM PF00467; match to protein family HMM TIGR01079 ribosomal protein L24	50S ribosomal protein L24	
RICPR00614	50S ribosomal protein L14	50S ribosomal protein l14	50S ribosomal protein L14	Residues 1 to 123 of 123 are 100 pct identical to residues 1 to 123 of a 123 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289871.1 50S ribosomal subunit protein L14	50S ribosomal protein L14	50S ribosomal protein L14	LSU ribosomal protein L14P	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50s ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	conserved gene 50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067 ribosomal protein L14	50S ribosomal protein L14	LSU ribosomal protein L14P	50S ribosomal protein L14	identified by similarity to SP:P02411 ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S ribosomal protein L14	50S RIBOSOMAL PROTEIN L14	50S ribosomal protein L14	identified by similarity to SP:P02411; match to protein family HMM PF00238; match to protein family HMM TIGR01067 ribosomal protein L14	
RICPR00615	30S ribosomal protein S17	30S ribosomal protein s17	30S ribosomal protein S17	Residues 1 to 84 of 84 are 100 pct identical to residues 1 to 84 of a 84 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289872.1 30S ribosomal subunit protein S17	30S ribosomal protein S17	30S ribosomal protein S17	SSU ribosomal protein S17P	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30s ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	conserved gene 30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	identified by match to protein family HMM PF00366 ribosomal protein S17	30S ribosomal protein S17	SSU ribosomal protein S17P	30S ribosomal protein S17	ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	30S ribosomal protein S17	
RICPR00616	50S ribosomal protein L29	50S ribosomal protein L29	identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012 ribosomal protein L29	LSU ribosomal protein L29P	identified by similarity to SP:P04457 ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	InterProMatches:IPR001854; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L29	apparent sequencing error at site of initiation of translation Ribosomal protein L29	similar to BR1225, ribosomal protein L29 RpmC, ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	identified by match to PFAM protein family HMM PF00831 ribosomal protein L29	Ortholog of S. aureus MRSA252 (BX571856) SAR2327 50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	best blastp match gb|AAK33190.1| (AE006478) 50S ribosomal protein L29 [Streptococcus pyogenes M1 GAS] 50S ribosomal protein L29	50S Ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	50S ribosomal protein L29	Similar to Bacillus stearothermophilus 50S ribosomal protein L29 RpmC SW:RL29_BACST (P04457) (66 aa) fasta scores: E(): 1.8e-15, 75.75% id in 66 aa, and to Bacillus subtilis 50S ribosomal protein L29 RpmC SW:RL29_BACSU (P12873) (66 aa) fasta scores: E(): 5.1e-16, 78.78% id in 66 aa 50S ribosomal protein L29	50S ribosomal protein L29	identified by similarity to SP:P12873; match to protein family HMM PF00831; match to protein family HMM TIGR00012 ribosomal protein L29	LSU ribosomal protein L29P	identified by similarity to EGAD:7122; match to protein family HMM PF00831; match to protein family HMM TIGR00012 ribosomal protein L29	similar to gi|57285012|gb|AAW37106.1| [Staphylococcus aureus subsp. aureus COL], percent identity 98 in 69 aa, BLASTP E(): 3e-29 50S ribosomal protein L29	Ribosomal protein L29	
RICPR00617	50S ribosomal protein L16	50S ribosomal protein l16	50S ribosomal protein L16	Residues 1 to 136 of 136 are 99 pct identical to residues 1 to 136 of a 136 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289874.1 50S ribosomal subunit protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50s ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	conserved gene 50S ribosomal protein L16/(L10E)	50S ribosomal protein L16	50S ribosomal protein L16	identified by match to protein family HMM PF00252; match to protein family HMM TIGR01164 ribosomal protein L16	50S ribosomal protein L16	LSU ribosomal protein L16P	50S ribosomal protein L16	identified by similarity to SP:P02414 ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	50S ribosomal protein L16	identified by similarity to SP:P02414; match to protein family HMM PF00252; match to protein family HMM TIGR01164 ribosomal protein L16	
RICPR00618	30S ribosomal protein S3	30S ribosomal protein s3	30S ribosomal protein S3	Residues 1 to 222 of 222 are 100 pct identical to residues 12 to 233 of a 233 aa protein from Escherichia coli O157:H7 ref: NP_312206.1 30S ribosomal subunit protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	SSU ribosomal protein S3P	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30s ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	conserved gene 30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	identified by match to protein family HMM PF00013; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM TIGR01009 ribosomal protein S3	30S ribosomal protein S3	SSU ribosomal protein S3P	30S ribosomal protein S3	identified by similarity to SP:P02352 ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	30S ribosomal protein S3	
RICPR00619	50S ribosomal protein L22	50S ribosomal protein l22	50S ribosomal protein L22	Residues 1 to 110 of 110 are 99 pct identical to residues 1 to 110 of a 110 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289876.1 50S ribosomal subunit protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal subunit protein L22	conserved gene 50S ribosomal protein L22	50S ribosomal subunit protein L22	50S ribosomal protein L22	identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044 ribosomal protein L22	LSU ribosomal protein L22P	50S ribosomal protein L22	identified by similarity to SP:P02423 ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	50S ribosomal protein L22	identified by similarity to SP:P42060; match to protein family HMM PF00237; match to protein family HMM TIGR01044 ribosomal protein L22	50S ribosomal protein L22	InterProMatches:IPR005727; Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: protein biosynthesis (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934) ribosomal protein L22 (BL17)	
RICPR00620	30S ribosomal protein S19	30S ribosomal protein s19	30S ribosomal protein S19	Residues 1 to 92 of 92 are 100 pct identical to residues 1 to 92 of a 92 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289877.1 30S ribosomal subunit protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30s ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal subunit protein S19	30S ribosomal subunit protein S19	30S ribosomal protein S19	identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050 ribosomal protein S19	30S ribosomal protein S19	SSU ribosomal protein S19P	30S ribosomal protein S19	identified by similarity to SP:P02375 ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	30S ribosomal protein S19	identified by similarity to SP:P02375; match to protein family HMM PF00203; match to protein family HMM TIGR01050 ribosomal protein S19	30S ribosomal protein S19	
RICPR00621	50S ribosomal protein L2	50S ribosomal protein l2	50S ribosomal protein L2	Residues 1 to 273 of 273 are 100 pct identical to residues 1 to 273 of a 273 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289878.1 50S ribosomal subunit protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50s ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal subunit protein L2	conserved gene 50S ribosomal protein L2	50S ribosomal subunit protein L2	50S ribosomal protein L2	identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171 ribosomal protein L2	50S ribosomal protein L2	LSU ribosomal protein L2P	50S ribosomal protein L2	identified by similarity to SP:P02387 ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	50S ribosomal protein L2	identified by similarity to SP:Q9Z9L1; match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171 ribosomal protein L2	
RICPR00622	50S ribosomal protein L23	50S ribosomal protein l23	50S ribosomal protein L23	Residues 1 to 100 of 100 are 100 pct identical to residues 1 to 100 of a 100 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289879.1 50S ribosomal subunit protein L23	50S ribosomal protein L23	50S ribosomal protein L23	LSU ribosomal protein L23P	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal subunit protein L23	conserved gene 50S ribosomal protein L23	50S ribosomal subunit protein L23	50S ribosomal protein L23	identified by match to protein family HMM PF00276 ribosomal protein L23	LSU ribosomal protein L23P	identified by similarity to SP:P02424; match to protein family HMM PF00276 ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	50S ribosomal protein L23	Mb0723, rplW, len: 100 aa. Equivalent to Rv0703, len: 100 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 100 aa overlap). Probable rplW, 50S ribosomal protein L23, equivalent to O06046|RL23_MYCBO 50S RIBOSOMAL PROTEIN L23 from Mycobacterium bovis BCG (100 aa); and MLCB2492_4 50S RIBOSOMAL PROTEIN L23 from Mycobacterium leprae (100 aa). Also highly similar to others e.g. CAB82072.1|AL161803 50S ribosomal protein L23 from Streptomyces coelicolor (139 aa) (N-terminus longer); P04454|RL23_BACST 50s ribosomal protein L23 from Bacillus stearothermophilus (95 aa), FASTA scores: opt: 275, E(): 1.4e-13, (50.5% identity in 95 aa overlap); etc. Contains PS00050 Ribosomal protein L23 signature. BELONGS TO THE L23P FAMILY OF RIBOSOMAL PROTEINS. PROBABLE 50S RIBOSOMAL PROTEIN L23 RPLW	InterProMatches:IPR001014; Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006 ribosomal protein L23	
RICPR00623	50S ribosomal protein L4	50S ribosomal protein l4	Residues 1 to 201 of 201 are 99 pct identical to residues 1 to 201 of a 201 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289880.1 50S ribosomal subunit protein L4, regulates expression of S10 operon	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50s ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal subunit protein L4	conserved gene 50S ribosomal protein L4	50S ribosomal subunit protein L4	50S ribosomal protein L4	identified by match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	L4P LSU ribosomal protein L1E	50S ribosomal protein L4	identified by similarity to SP:Q9Z9L3; match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	50S ribosomal protein L4	identified by similarity to SP:P28601; match to protein family HMM PF00573 ribosomal protein L4	50S ribosomal protein L4	InterProMatches:IPR002136; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein L4	
RICPR00624	50S ribosomal protein L3	50S ribosomal protein l3	50S ribosomal protein L3	Residues 1 to 209 of 209 are 100 pct identical to residues 1 to 209 of a 209 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289881.1 50S ribosomal subunit protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50s ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal subunit protein L3	conserved gene 50S ribosomal protein L3	50S ribosomal subunit protein L3	50S ribosomal protein L3	identified by match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	LSU ribosomal protein L3P	50S ribosomal protein L3	identified by similarity to SP:P02386; match to protein family HMM PF00297 ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	50S ribosomal protein L3	
RICPR00625	30S ribosomal protein S10	30S ribosomal protein s10	30S ribosomal protein S10	Residues 1 to 103 of 103 are 100 pct identical to residues 1 to 103 of a 103 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289882.1 30S ribosomal subunit protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30s ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal subunit protein S10	conserved gene 30S ribosomal protein S10	30S ribosomal subunit protein S10	30S ribosomal protein S10	identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	SSU ribosomal protein S10P	30S ribosomal protein S10	identified by similarity to SP:P02364; match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	30S ribosomal protein S10	identified by similarity to SP:P02364; match to protein family HMM PF00338; match to protein family HMM TIGR01049 ribosomal protein S10	30S ribosomal protein S10	
RICPR00626	Elongation factor Tu	Elongation factor Tu (EF-Tu)	Elongation factor Tu	Residues 16 to 409 of 409 are 99 pct identical to residues 1 to 394 of a 394 aa protein from Salmonella typhimurium pir: S13560 translation elongation factor EF-Tu.A	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Elongation factor Tu	elongation factor	Elongation factor Tu	elongation factor Tu	conserved gene elongation factor Tu (EF-Tu)	elongation factor Tu	Elongation factor Tu	Elongation factor Tu	EF-TU Protein Translation Elongation Factor Tu	elongation factor EF-Tu	identified by similarity to SP:P48864; match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485 translation elongation factor Tu	Elongation factor Tu	translation elongation factor EF-Tu	Elongation factor Tu	Translation elongation factor Tu	Elongation factor Tu	identified by similarity to SP:P48864; match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485 translation elongation factor Tu	Elongation factor Tu	Elongation factor Tu	Mb0704, tuf, len: 396 aa. Equivalent to Rv0685, len: 396 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 396 aa overlap). Probable tuf, elongation factor EF-Tu, equivalent to JC2262 translation elongation factor Tu from Mycobacterium leprae (396 aa).  Also highly similar to others e.g. P42439|EFTU_CORGL ELONGATION FACTOR TU (EF-TU) from Corynebacterium glutamicum (396 aa); etc. Contains PS00017 ATP/GTP-binding site motif A, and PS00301 GTP-binding elongation factors signature. BELONGS TO THE GTP-BINDING ELONGATION FACTOR FAMILY, EF-TU/EF-1A SUBFAMILY. PROBABLE ELONGATION FACTOR TU TUF (EF-TU)	InterProMatches:IPR005225, IPR004541; Molecular Function: GTP binding (GO:0005525), Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Biological Process: translational elongation (GO:0006414) elongation factor Tu	
RICPR00627	Putative uncharacterized protein RP664	tRNA /rRNA methyltransferase	TRNA/rRNA methyltransferase	Residues 1 to 243 of 243 are 100 pct identical to residues 1 to 243 of a 243 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290810.1 orf, conserved hypothetical protein	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	Putative trmH family tRNA/rRNA methyltransferase	YjfH protein	conserved hypothetical protein	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	similar to RNA methyltransferase hypothetical protein	conserved gene tRNA/rRNA methyltransferase	Similar to RNA methyltransferase hypothetical protein	TRNA/rRNA methyltransferase	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 RNA methyltransferase, TrmH family, group 3	rRNA methylase	23S rRNA Gm2251 methyltransferase	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 RNA methyltransferase, TrmH family, group 3	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	Putative tRNA/rRNA methyltransferase	RRNA Methylase	identified by match to protein family HMM PF00588 RNA methyltransferase, TrmH family	tRNA/rRNA methyltransferase protein	Molecular Function: RNA methyltransferase activity (GO:0008173), Biological Process: RNA modification (GO:0009451) putative tRNA/rRNA methyltransferase YacO	tRNA/rRNA methyltransferase	23S rRNA (guanosine-2'-O-)-methyltransferase rlmB	COG0566 rRNA methylases tRNA-rRNA methyltransferase	
RICPR00628	Fumarate hydratase class II	Fumarate hydratase c	Fumarate hydratase class II	Residues 1 to 467 of 467 are 99 pct identical to residues 1 to 467 of a 467 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288046.1 fumarase C= fumarate hydratase Class II; isozyme	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	fumarate hydratase, class II	conserved gene fumarate hydratase	fumarate hydratase, class II	Fumarate hydratase	identified by similarity to EGAD:6510; match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	Adenylosuccinate lyase	fumarase	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	Fumarate hydratase class II	Fumarate hydratase class II	Fumarate hydratase class II	identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979 fumarate hydratase, class II	Fumarate hydratase, class II	Fumarate hydratase class II	Mb1128c, fum, len: 474 aa. Equivalent to Rv1098c, len: 474 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 474 aa overlap). Probable fum, fumarase (EC 4.2.1.2). Equivalent to AL049491|MLCB1222_11 Mycobacterium leprae (474 aa) (89.5 % identity in 467 aa overlap). Similar to many e.g. P14408|FUMH_RAT FUMARATE HYDRATASE, MITOCHONDRIAL PRECURSOR from Rattus norvegicus (507 aa), FASTA scores: opt: 1427, E(): 0, (52.3% identity in 461 aa overlap); and P05042|FUMC_ECOLI Fumarate hydratase class II from Escherichia coli (467 aa), FASTA scores: opt: 1355, E(): 0, (50.2% identity in 444 aa overlap). Contains PS00163 Fumarate lyases signature.  TBparse score is 0.886. PROBABLE FUMARASE FUM (Fumarate hydratase)	InterProMatches:IPR005677, IPR000362; Molecular Function: fumarate hydratase activity (GO:0004333), Biological Process: fumarate metabolism (GO:0006106), Cellular Component: TCA cycle enzyme complex (GO:0045239), Molecular Function: catalytic activity (GO:0003824) fumarate hydratase	fumarate hydratase	Fumarate hydratase class II	
RICPR00629	Cell division protein ftsZ	Cell division protein ftsZ	Residues 1 to 355 of 355 are 98 pct identical to residues 29 to 383 of a 383 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285791.1 tubulin-like GTP-binding protein and GTPase; cell division; forms circumferential ring	Cell division protein ftsZ	Cell division protein ftsZ	cell division GTPase	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein FtsZ	conserved gene cell division protein FtsZ	Cell division protein FtsZ	Cell division protein ftsZ	identified by similarity to EGAD:17529; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 cell division protein FtsZ	Cell division protein ftsZ	cell division protein FtsZ	cell division protein	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	Cell division protein ftsZ	identified by similarity to SP:P17865; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 cell division protein FtsZ	Cell division protein ftsZ	Cell division protein ftsZ	Mb2174c, ftsZ, len: 379 aa. Equivalent to Rv2150c, len: 379 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 379 aa overlap). ftsZ, cell division protein (see first citation below). Contains FtsZ protein signature 2 (PS01135). FASTA best: FTSZ_STRCO P45500 cell division protein FtsZ (399 aa) opt: 1674, E(): 0; (77.3% identity in 339 aa overlap). cell division protein FtsZ	InterProMatches:IPR000158; required for septum formation during sporulation,Molecular Function: GTP binding (GO:0005525), Biological Process: cell cycle (GO:0007049) cell-division initiation protein	septum formation cell division initiation protein FtsZ	Cell division protein ftsZ	
RICPR00630	Putative uncharacterized protein RP667	identified by match to protein family HMM PF01106 nifU domain protein	Nitrogen fixation protein	NifU family protein containing thioredoxin-like domain	similar to BR0140, NifU-related protein NifU-related protein	Putative uncharacterized protein	Similar to rc||RC1018 rp||RP667; Ortholog to ERGA_CDS_07980 Conserved hypothetical protein	conserved family - putative nifU-like protein hypothetical protein	COG0694 thioredoxin-like protein	LmjF26.0190, predicted protein, len = 241 aa, nifu-like protein; predicted pI = 4.2628; some similarity to other eukaryotic nifu-like proteins, contains a nifU-like domain hypothetical protein, conserved	NifU protein	NifU-like domain protein	go_component: mitochondrial matrix [goid 0005759]; go_function: protein binding [goid 0005515]; go_process: iron-sulfur cluster assembly [goid 0016226] HIRA-interacting protein 5, putative	Similar to rc||RC1018 rp||RP667; Ortholog to ERWE_CDS_08070 Conserved hypothetical protein	NifU-like domain	nitrogen-fixing NifU	Nitrogen-fixing NifU, C-terminal	Nitrogen-fixing NifU, C-terminal	C-terminal Citation: Hwang DM et al, J Mol Evol.  1996 Nov;43(5):536-40. PMID: 8875867 Nitrogen-fixing NifU	Nitrogen-fixing NifU-like protein	nitrogen-fixing NifU-like	NifU-like domain protein identified by match to protein family HMM PF01106	transcript_id=ENSOCUT00000009540	nitrogen-fixing NifU-like	NifU-like protein	putative nifU iron-sulphur cluster scaffold protein Similar, but truncated at the N-terminus, to Homo sapiens (Human) cytosolic iron-sulfur cluster scaffold protein Nfu. UniProt:Q7Z5B1 (EMBL:AY286307) (230 aa), and similar to entire protein of Rhizobium meliloti (Sinorhizobium meliloti) hypothetical protein smc01119.  UniProt:Q92SI8 (EMBL:SME591783) (188 aa) similarity:fasta; with=UniProt:Q7Z5B1 (EMBL:AY286307); Homo sapiens (Human).; Cytosolic iron-sulfur cluster scaffold protein Nfu.; length=230; id 49.198; 187 aa overlap; query 1-185; subject 35-214 similarity:fasta; with=UniProt:Q92SI8 (EMBL:SME591783); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc01119.; length=188; id 82.796; 186 aa overlap; query 1-185; subject 1-185	Nitrogen-fixing NifU-like	nitrogen-fixing NifU-like PFAM: nitrogen-fixing NifU-like: (4.2e-31) KEGG: sil:SPO0382 NifU domain protein, ev=2e-93, 89% identity	nitrogen-fixing NifU-like	
RICPR00631	Putative transporter ampG 2	AmpG protein	putative transmembrane permease	major facilitator superfamily domain containing 3 [Source:HGNC Symbol;Acc:25157]	transcript_id=ENSDNOT00000002672	AmpG	Major facilitator superfamily MFS_1 precursor	transcript_id=ENSETET00000011104	transcript_id=ENSGACT00000015301	transcript_id=ENSFCAT00000014393	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: bcn:Bcen_2487 major facilitator superfamily MFS_1	transcript_id=ENSMLUT00000011274	Major facilitator superfamily domain-containing protein 3  [Source:UniProtKB/Swiss-Prot;Acc:Q96ES6]	transcript_id=ENSSART00000013347	Putative transport protein	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1 KEGG: yps:YPTB1600 putative signal transducer or MFS superfamily transporter	Siderophore transporter RhtX/FptX family precursor	AmpG protein	transcript_id=ENSMICT00000015910	AmpG	transcript_id=ENSOPRT00000002565	AmpG	AmpG protein	Major facilitator superfamily transporter	AmpG	Major facilitator superfamily MFS_1	jgi|Helro1|90722	jgi|Lotgi1|102306|e_gw1.1.399.1	Major facilitator superfamily MFS_1	
RICPR00632	PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE	RhlE; ATP-dependent RNA helicase RhlE	ATP-dependent RNA helicase RhlE	ATP-dependent RNA helicase	IPR000629: ATP-dependent helicase, DEAD-box; IPR001410: DEAD/DEAH box helicase putative ATP-dependent RNA helicase	similar to Salmonella typhi CT18 putative ATP-dependent RNA helicase rhlE putative ATP-dependent RNA helicase rhlE	Putative ATP-dependent RNA helicase rhlE	ATP-dependent RNA helicase, DEAD/DEAH box family	ATP-dependent RNA helicase	Cold-shock DEAD box protein A homolog	Putative ATP-dependent RNA helicase	ATP-dependent RNA helicase	ATP-dependent RNA helicase	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 ATP-dependent RNA helicase, DEAD box family	Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal	Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal	ATP-dependent RNA helicase RhlE	Code: LKJ; COG: COG0513 putative ATP-dependent RNA helicase	Code: LKJ; COG: COG0513 putative ATP-dependent RNA helicase	DEAD/DEAH box helicase-like	DEAD/DEAH box helicase	DEAD/DEAH box helicase-like	putative ATP-dependent RNA helicase	DEAD/DEAH box helicase-like protein	DEAD/DEAH box helicase-like	DEAD/DEAH box helicase-like	ATP-dependent RNA helicase RhlE	Superfamily II DNA and RNA helicase COG0513	Code: LKJ; COG: COG0513 putative ATP-dependent RNA helicase	
RICPR00633	Cold shock-like protein cspA	Cold shock protein	Cold-shock protein C	Probable cold shock-like cspc transcription regulator protein	Cold shock protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark major cold shock protein	Cold shock protein	IPR002059: Cold-shock DNA-binding domain Cold shock protein cspA (CSP-A)	similar to Salmonella typhi CT18 cold shock protein cold shock protein	Major cold shock protein	cold-shock protein C	Ortholog of S. aureus MRSA252 (BX571856) SAR0848 putative cold shock protein	cold-shock protein C	Similar to rp||cspA sp|P55390|Y4CH_RHISN; Ortholog to ERGA_CDS_07240 Putative Cold shock-like protein cspA	identified by match to protein family HMM PF00313 cold-shock domain family protein	COG1278 CspC cold shock proteins; go_process: 0006355 cold shock protein	Cold shock protein	Cold shock protein CspA	Similar to Q89UH2 Cold shock protein from Bradyrhizobium japonicum (70 aa). FASTA: opt: 297 Z-score: 443.7 E(): 8e-17 Smith-Waterman score: 297; 66.176 identity in 68 aa overlap. cold shock protein	Cold shock protein	Cold shock protein cspA	major cold shock protein	cold shock-like protein CspC	cold-shock protein C	Similar to rp||cspA sp|P55390|Y4CH_RHISN; Ortholog to ERWE_CDS_07320 Putative Cold shock-like protein cspA	identified by similarity to SP:P72188; match to protein family HMM PF00313 cold shock protein CapA	identified by match to protein family HMM PF00313 cold shock protein capa , fragment-related protein	Cold-shock protein, DNA-binding	Cold-shock protein, DNA-binding	

RICPR00634	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Dimethyladenosine transferase	Residues 1 to 273 of 273 are 99 pct identical to residues 1 to 273 of a 273 aa protein from Escherichia coli K12 ref: NP_414593.1 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	16S rRNA dimethylase dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Ribosomal RNA small subunit methyltransferase A	similar to dimethyladenosine transferase (16S rRNA dimethylase) hypothetical protein	conserved gene dimethyladenosine transferase	similar to dimethyladenosine transferase (16S rRNA dimethylase) hypothetical protein	Ribosomal RNA small subunit methyltransferase A	identified by similarity to EGAD:18456; match to protein family HMM PF00398; match to protein family HMM TIGR00755 dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	dimethyladenosine transferase	identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755 dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	dimethyladenosine transferase (rRNA methylation)	Ribosomal RNA small subunit methyltransferase A	Dimethyladenosine transferase	Dimethyladenosine transferase	Ribosomal RNA small subunit methyltransferase A	
RICPR00635	Uncharacterized protein RP673	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Peptidyl-prolyl cis-trans isomerase	
RICPR00636	Putative uncharacterized protein RP674	identified by similarity to SP:P31554 organic solvent tolerance protein, putative	Organic solvent tolerance protein OstA	similar to BR0685, organic solvent tolerance, hypothetical organic solvent tolerance, hypothetical	Putative uncharacterized protein	Putative role in outermembrane permeability	COG1452 organic solvent tolerance protein	Organic solvent tolerance protein OstA	Organic solvent tolerance protein	identified by similarity to SP:P31554; match to protein family HMM PF04453 organic solvent tolerance protein	Organic solvent tolerance protein homolog	Organic solvent tolerance protein	Organic solvent tolerance protein	Organic solvent tolerance protein	COG1452.1, Imp Organic solvent tolerance protein OstA Putative organic solvent tolerance protein	Organic solvent tolerance protein	organic solvent tolerance protein, putative	organic solvent tolerance transmembrane protein	Organic solvent tolerance protein-like protein	putative outer membrane protein involved in envelope biosynthesis similarity:fasta; with=UniProt:OSTA_ECOLI (EMBL:ECAPAH02); Escherichia coli.; imp; Organic solvent tolerance protein precursor.; length=784; id 22.030; 808 aa overlap; query 13-774; subject 8-772 similarity:fasta; with=UniProt:Q92KG5; Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc00582.; length=781; id 58.581; 775 aa overlap; query 1-773; subject 1-773	Organic solvent tolerance protein OstA-like	Organic solvent tolerance protein PFAM: OstA-like protein: (0.0024) Organic solvent tolerance protein: (3.5e-17) KEGG: sil:SPO2455 organic solvent tolerance protein, putative, ev=0.0, 56% identity	Organic solvent tolerance protein	putative organic solvent tolerance protein OstA similar to AGR_C_2049p [Agrobacterium tumefaciens] and SMc00582 [Sinorhizobium meliloti] Similar to swissprot:Q8UGD2 Putative location:bacterial outer membrane Psort-Score: 0.9252	Organic solvent tolerance protein precursor	Organic solvent tolerance protein	Organic solvent tolerance protein	Organic solvent tolerance protein precursor	Hypothetical protein	
RICPR00637	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	Exodeoxyribonuclease 7 large subunit	identified by similarity to EGAD:17808; match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 exodeoxyribonuclease VII, large subunit	exodeoxyribonuclease VII large subunit	Exodeoxyribonuclease 7 large subunit	exodeoxyribonuclease VII, large subunit	Probable exodeoxyribonuclease VII large subunit	Exodeoxyribonuclease 7 large subunit	Exonuclease VII, large subunit	exodeoxyribonuclease VII (large subunit) EX7L	Exodeoxyribonuclease 7 large subunit	Exonuclease VII large subunit	Exonuclease VII, large subunit	exodeoxyribonuclease VII large subunit	Similar to Porphyromonas gingivalis W83 exodeoxyribonuclease VII, large subunit XseA or PG1128 SWALL:AAQ66236 (EMBL:AE017175) (460 aa) fasta scores: E(): 3.9e-50, 39.69% id in 451 aa, and to Escherichia coli exodeoxyribonuclease VII large subunit XseA or B2509 SWALL:EX7L_ECOLI (SWALL:P04994) (456 aa) fasta scores: E(): 7.6e-17, 27.53% id in 454 aa putative exodeoxyribonuclease VII large subunit	Exodeoxyribonuclease 7 large subunit	Similar to Q8A0Y1 (Q8A0Y1) Putative exodeoxyribonuclease VII large subunit from Bacteroides thetaiotaomicron (417 aa). FASTA: opt: 624 Z-score: 722.3 E(): 2.4e-32 Smith-Waterman score: 632; 31.567 identity in 453 aa overlap. Exodeoxyribonuclease VII large subunit	Exonuclease VII, large subunit	exodeoxyribonuclease VII, large subunit	Similar to Escherichia coli exodeoxyribonuclease VII large subunit XseA or b2509 SWALL:EX7L_ECOLI (SWALL:P04994) (456 aa) fasta scores: E(): 1.1e-20, 26.72% id in 434 aa, and to Streptomyces coelicolor probable exodeoxyribonuclease VII large subunit XseA or SCO5056 or SCK7.29c SWALL:EX7L_STRCO (SWALL:Q9FBM3) (402 aa) fasta scores: E(): 2.3e-50, 39.33% id in 389 aa exodeoxyribonuclease VII large subunit	identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 exodeoxyribonuclease VII, large subunit	hypothetical protein, similar to exodeoxyribonuclease large subunit	Exonuclease VII, large subunit	Exodeoxyribonuclease VII, large subunit	Best Blastp Hit: pir||B81850 exonuclease VII large subunit NMA1575 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7380216|emb|CAB84802.1| (AL162756) exonuclease VII large subunit [Neisseria meningitidis] COG1570 Exonuclease VII, large subunit putative exonuclease VII large subunit	Exonuclease VII, large subunit	similar to gi|27468122|ref|NP_764759.1| [Staphylococcus epidermidis ATCC 12228], percent identity 74 in 445 aa, BLASTP E(): 0.0 exodeoxyribonuclease large subunit	identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 exodeoxyribonuclease VII, large subunit	
RICPR00638	EXODEOXYRIBONUCLEASE III	Probable exodeoxyribonuclease III protein	Similar to exodeoxyribonuclease III XthA hypothetical protein	conserved gene exodeoxyribonuclease III	Similar to exodeoxyribonuclease III XthA hypothetical protein	exodeoxyribonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease III	Exonuclease III	Exonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease III	exodeoxyribonuclease III	Similar to rp||xthA2 rc||xthA2 rp||xthA1; Ortholog to ERGA_CDS_03890 Exodeoxyribonuclease III	COG0708 XthA exonuclease III similar to NP_360665.1 exodeoxyribonuclease III	Exodeoxyribonuclease III	Exodeoxyribonuclease III	exodeoxyribonuclease III	exodeoxyribonuclease III	exodeoxyribonuclease III	Similar to rp||xthA2 rc||xthA2 rp||xthA1; Ortholog to ERWE_CDS_03930 Exodeoxyribonuclease III	AP endonuclease, family 1:Exodeoxyribonuclease III xth	AP endonuclease, family 1:Exodeoxyribonuclease III xth	AP endonuclease, family 1:Exodeoxyribonuclease III xth	Exodeoxyribonuclease III	Best Blastp Hit: pir||G81204 exodeoxyribonuclease III NMB0399 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225621|gb|AAF40839.1| (AE002395) exodeoxyribonuclease III [Neisseria meningitidis MC58] COG0708 Exonuclease III putative exodeoxyribonuclease III	AP endonuclease, family 1:Exodeoxyribonuclease III xth	AP endonuclease, family1:ExodeoxyribonucleaseIII xth	Exodeoxyribonuclease III xth	

RICPR00639	GTP-binding protein engA	GTP-binding protein	GTP-binding protein engA	Residues 1 to 503 of 503 are 99 pct identical to residues 1 to 503 of a 503 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289064.1 putative GTP-binding factor	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	GTP-binding protein engA	putative GTP-binding protein	GTP-binding protein engA	GTP-binding protein engA	Highly similar to GTP-binding proteins hypothetical protein	conserved gene GTP-binding protein EngA	Highly similar to GTP-binding proteins hypothetical protein	GTP-binding protein engA	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein, Era/TrmE family	GTP-binding protein engA	GTP-binding protein	GTP-binding protein engA	identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTP-binding protein EngA	GTP-binding protein engA	GTP-binding protein, putative	GTP-binding protein engA	GTP-binding protein engA	Putative uncharacterized protein	GTP-binding protein engA	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650 GTPase family protein	
RICPR00640	Putative uncharacterized protein RP678	identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982 2-polyprenylphenol 6-hydroxylase	Probable ubiquinone biosynthesis protein ubiB	PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER	Mb3220, -, len: 447 aa. Equivalent to Rv3197, len: 447 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 447 aa overlap). Probable conserved ATP-binding protein ABC transporter, highly similar to Mycobacterium leprae proteins: Q9CCM8|ML0640 HYPOTHETICAL PROTEIN (473 aa), FASTA scores: opt: 2512, E(): 2.1e-140, (83.0% identity in 447 aa overlap). Interestingly, the N-terminal half (1-219 aa) corresponds to Q49747|ABC1|B1937_C3_233 ABC1 PROTEIN from Mycobacterium leprae (267 aa), FASTA scores: opt: 1276, E(): 6.3e-68, (88.6% identity in 219 aa overlap); and the C-terminal half (239-447 aa) corresponds to Q49745|B1937_C2_179 HYPOTHETICAL 23.1 KDA PROTEIN (206 aa), FASTA scores: opt: 1138, E(): 6.5e-60, (77.05% identity in 209 aa overlap); two adjacent orfs from Mycobacterium leprae. Also highly similar to other proteins (generally ABC transporters) e.g. Q9FCJ6|2SC3B6.16c HYPOTHETICAL 51.3 KDA PROTEIN from Streptomyces coelicolor (469 aa), FASTA scores: opt: 1340, E(): 1.8e-71, (45.9% identity in 449 aa overlap); O65576|ABC1AT ABC1 PROTEIN (alias Q9SBB2|T15B16.14|AT4G01660 PUTATIVE ABC TRANSPORTER) from Arabidopsis thaliana (Mouse-ear cress) (623 aa), FASTA scores: opt: 543, E(): 1.7e-24, (28.4% identity in 405 aa overlap); O27682|MTH1645 ABC TRANSPORTER from Methanobacterium thermoautotrophicum (623 aa), FASTA scores: opt: 497, E(): 7.8e-22, (33.0% identity in 309 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE ATP-BINDING TRANSPORT PROTEIN FAMILY (ABC TRANSPORTERS). PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER	Predicted protein kinase, AarF	Putative ubiquinone biosynthesis protein	Similar to rp||RP678 rc||RC1036; Ortholog to ERGA_CDS_02600 Probable ubiquinone biosynthesis protein	COG0543 UbiB 2-polyprenylphenol hydroxylase similar to NP_541211.1 ubiquinone biosynthesis protein	COG0661 ubiquinone biosynthesis protein	identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982 ubiquinone biosynthesis protein UbiB	AarF ubiquinone biosynthesis protein	Similar to rp||RP678 rc||RC1036; Ortholog to ERWE_CDS_02630 Probable ubiquinone biosynthesis protein	2-polyprenylphenol 6-hydroxylase	2-polyprenylphenol 6-hydroxylase	Best Blastp Hit: pir||G81917 probable ubiquinone biosynthesis protein NMA0741 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|7379463|emb|CAB84025.1| (AL162754) putative ubiquinone biosynthesis protein [Neisseria meningitidis] COG0661 Predicted unusual protein kinase; AarF putative ubiquinone biosynthesis protein	2-polyprenylphenol 6-hydroxylase	identified by similarity to PIR:A96904; match to protein family HMM PF03109 ABC1 family protein	similar to AarF of E. coli; in E. coli, aarF is required for ubiquinone production (J. Bacteriol. 1998, 180:128-135), but the exact function is not yet known. probable ubiquinone biosynthesis protein	2-octaprenylphenol hydroxylase	2-polyprenylphenol 6-hydroxylase	putative ubiquinone biosynthesis protein identified by similarity to SP:P27854; match to protein family HMM PF03109	2-polyprenylphenol 6-hydroxylase	ABC-1	2-polyprenylphenol 6-hydroxylase	2-polyprenylphenol 6-hydroxylase	2-polyprenylphenol 6-hydroxylase TIGRFAM: 2-polyprenylphenol 6-hydroxylase: (2.9e-202) PFAM: ABC-1: (5.1e-44) KEGG: sil:SPO0144 2-polyprenylphenol 6-hydroxylase, ev=0.0, 82% identity	2-polyprenylphenol 6-hydroxylase identified by similarity to SP:P27854; match to protein family HMM PF03109; match to protein family HMM TIGR01982	Ubiquinone biosynthesis protein, putative	

RICPR00642	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis	Menaquinone biosynthesis methyltransferase ubiE	Residues 1 to 251 of 251 are 100 pct identical to residues 1 to 251 of a 251 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290465.1 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase	conserved gene ubiquinone/menaquinone biosynthesis methyltransferase UbiE	Ubiquinone/menaquinone biosynthesis methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934 methlytransferase, UbiE/COQ5 family	ubiquinone/menaquinone biosynthesis methyltransferase	identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM TIGR01934 ubiquinone/menaquinone biosynthesis methyltransferase UbiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase ubiE	Menaquinone biosynthesis methyltransferase ubiE	Methylase	identified by similarity to SP:O86169; match to protein family HMM PF01209; match to protein family HMM TIGR01934 ubiquinone/menaquinone biosynthesis methyltransferase	Menaquinone biosynthesis methyltransferase ubiE	Ubiquinone/menaquinone biosynthesis methyltransferase protein	Menaquinone biosynthesis methyltransferase ubiE	Mb0573, menH, len: 234 aa. Equivalent to Rv0558, len: 234 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 234 aa overlap). Probable menH (alternate gene name: menG), ubiquinone/menaquinone biosynthesis methlytransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase) (EC 2.1.1.-), equivalent to NP_302480.1|NC_002677 putative ubiquinone/menaquinone biosynthesis methyltransferase from Mycobacterium leprae (238 aa). Also highly similar to others e.g. CAB44537.1|AL078618|T34630 from Streptomyces coelicolor (231 aa); UBIE_ECOLI|P27851 from Escherichia coli strain K12 (251 aa), FASTA scores: opt: 421, E(): 1.2e-21, (43.2% identity in 227 aa overlap); GRC2_BACSU|P31113 from Bacillus subtilis (233 aa), FASTA scores: opt: 345, E(): 1.4e-16, (34.6% identity in 231 aa overlap); etc. BELONGS TO THE UBIE FAMILY. Note that previously known as ubiE. PROBABLE UBIQUINONE/MENAQUINONE BIOSYNTHESIS METHYLTRANSFERASE MENH (2-heptaprenyl-1,4-naphthoquinone methyltransferase)	InterProMatches:IPR004034; menaquinone biosynthesis,Molecular Function: methyltransferase activity (GO:0008168), Biological Process: coenzyme biosynthesis (GO:0009108) methyltransferase	menaquinone biosynthesis methyltransferase	
RICPR00643	Putative uncharacterized protein RP681	Intracellular PHB depolymerase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark PHB depolymerase	PHB depolymerase	PHB depolymerase	identified by similarity to GP:3641686; match to protein family HMM PF06850; match to protein family HMM TIGR01849 polyhydroxyalkanoate depolymerase, intracellular	Poly-beta-hydroxyalkanoate depolymerase	polyhydroxyalkanoate depolymerase	conserved hypothetical protein	Polyhydroxyalkanoate depolymerase, intracellular	polyhydroxyalkanoate depolymerase, intracellular	polyhydroxyalkanoate depolymerase, intracellular	Poly-beta-hydroxyalkanoate depolymerase	putative PHB depolymerase similarity:fasta; with=UniProt:Q71KW6 (EMBL:AF474374); Azospirillum brasilense.; phaZ; PHB depolymerase.; length=603; id 57.471; 348 aa overlap; query 61-406; subject 257-602 similarity:fasta; with=UniProt:Q92TD3 (EMBL:SME591782); Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc02770.; length=424; id 76.000; 425 aa overlap; query 1-424; subject 1-423 Codons 60 to the C-terminus are similar to codons 255 to the C-terminus of Azospirillum brasilense PHB depolymerase phaZ UniProt:Q92TD3 (EMBL:SME591782) (603 aa), and entire protein is similar to Rhizobium meliloti (Sinorhizobium meliloti) Hypothetical protein SMc02770 UniProt:Q92TD3 (EMBL:SME591782) (424 aa)	Polyhydroxyalkanoate depolymerase	Poly-beta-hydroxyalkanoate depolymerase	polyhydroxyalkanoate depolymerase, intracellular TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular: (1.5e-245) PFAM: PHB de-polymerase-like: (7.5e-129) KEGG: sil:SPO1291 polyhydroxyalkanoate depolymerase, intracellular, ev=0.0, 81% identity	polyhydroxyalkanoate depolymerase, intracellular	probable intracellular PHB depolymerase protein similar to mll4552 [Mesorhizobium loti], AGR_C_24p [Agrobacterium tumefaciens] and SMc02770 [Sinorhizobiummeliloti] Similar to swissprot:Q98DT9 Putative location:bacterial inner membrane Psort-Score: 0.2869	polyhydroxyalkanoate depolymerase, intracellular	Polyhydroxyalkanoate depolymerase, intracellular	PHB depolymerase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	conserved hypothetical protein	polyhydroxyalkanoate depolymerase, intracellular	Polyhydroxyalkanoate depolymerase, intracellular	hypothetical protein COG4553 Poly-beta-hydroxyalkanoate depolymerase	Poly-beta-hydroxyalkanoate depolymerase	polyhydroxyalkanoate depolymerase, intracellular TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular PFAM: PHB de-polymerase domain protein KEGG: rde:RD1_1887 polyhydroxyalkanoate depolymerase, intracellular, putative	polyhydroxyalkanoate depolymerase, intracellular, putative	
RICPR00644	Putative uncharacterized protein RP682	hypothetical protein	Putative uncharacterized protein	Residues 21 to 285 of 285 are 97 pct identical to residues 1 to 265 of a 265 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287234.1 orf, conserved hypothetical protein	Putative deoxyribonuclease	Uncharacterized protein family UPF0006	Putative deoxyribonuclease	YcfH protein	TatD	Putative tatd-related deoxyribonuclease; protein	Similar to putative deoxyribonuclease YcfH and to probable metal-dependent hydrolase	Similar to putative deoxyribonuclease belonging to the TatD DNAse family hypothetical protein	conserved gene deoxyribonuclease TatD	Similar to putative deoxyribonuclease belonging to the TatD DNAse family hypothetical protein	DNAse	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 deoxyribonuclease, TatD family	Uncharacterized deoxyribonuclease UU017	TatD Sec-independent protein translocase protein	similar to Sec-independent protein translocase protein TatD Mg-dependent DNase	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 hydrolase, TatD family	Putative uncharacterized protein	deoxyribonuclease, putative	Putative deoxyribonuclease	Deoxyribonuclease, TatD related	Mg-dependent DNase	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 hydrolase, TatD family	Putative uncharacterized protein	Deoxyribonuclease protein	PROBABLE DEOXYRIBONUCLEASE TATD	
RICPR00645	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	MetS/MetG	methionyl-tRNA synthetase	Methionyl-tRNA synthetase	identified by match to protein family HMM PF00133; match to protein family HMM PF01588; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399 methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Protein secretion chaperonin CsaA Methionyl-tRNA synthetase	methionyl-tRNA synthetase	methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionine-tRNA ligase	Methionyl-tRNA synthetase	identified by similarity to SP:P23920; match to protein family HMM PF00133; match to protein family HMM PF01588; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399 methionyl-tRNA synthetase	MetS	Methionyl-tRNA synthetase protein	Methionyl-tRNA synthetase	Mb1034c, metS, len: 519 aa. Equivalent to Rv1007c, len: 519 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 519 aa overlap). Probable metS (MetG), methionyl-tRNA synthetase (EC 6.1.1.10), similar to many e.g. SYM_BACSU|P37465 methionyl-tRNA synthetase from Bacillus subtilus (664 aa), FASTA scores: opt: 1506, E(): 0, (44.9% identity in 492 aa overlap); similar to other M.  tuberculosis tRNA synthases e.g. Rv2448c, Rv1536, Rv0041.  Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature. BELONGS TO CLASS-I AMINOACYL-TRNA SYNTHETASE FAMILY. STRONG, TO CYSTEINYL-TRNA SYNTHETASE. PROBABLE METHIONYL-TRNA SYNTHETASE METS (MetRS) (Methionine--tRNA ligase)	InterProMatches:IPR002304, IPR004495; Molecular Function: methionine-tRNA ligase activity (GO:0004825), Biological Process: methionyl-tRNA aminoacylation (GO:0006431) methionyl-tRNA synthetase MetS	methionyl-tRNA synthetase	COG0143 Methionyl-tRNA synthetase met-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	similar to BR0995, methionyl-tRNA synthetase MetG, methionyl-tRNA synthetase	Methionyl-tRNA synthetase	Methionyl-tRNA synthetase	
RICPR00646	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Residues 1 to 213 of 213 are 100 pct identical to residues 1 to 213 of a 213 aa protein from Escherichia coli K12 ref: NP_415616.1 thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Similar to thymidylate kinase hypothetical protein	conserved gene thymidylate kinase	Similar to thymidylate kinase hypothetical protein	Thymidylate kinase	identified by similarity to EGAD:20762; match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	Thymidylate kinase	Thymidylate kinase	thymidylate kinase	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	Thymidylate kinase	thymidylate kinase	Thymidylate kinase	Thymidylate kinase	Thymidylate kinase	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 thymidylate kinase	
RICPR00647	PROLINE/BETAINE TRANSPORTER	sugar transporter	MFS type sugar transporter PFAM00083 Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	transporter	Thymidylate kinase	Putative MFS family transmembrane transporter protein	Proline/betaine transporter	Proline/betaine transporter	
RICPR00648	4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE	4-hydroxybenzoate octaprenyltransferase	Residues 1 to 290 of 290 are 99 pct identical to residues 1 to 290 of a 290 aa protein from Escherichia coli O157:H7 ref: NP_313050.1 4-hydroxybenzoate-octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	UbiA protein	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	Similar to 4-hydroxybenzoate-octaprenyltransferase hypothetical protein	conserved gene 4-hydroxybenzoate octaprenyltransferase UbiA	Similar to 4-hydroxybenzoate-octaprenyltransferase hypothetical protein	identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474 4-hydroxybenzoate polyprenyl transferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase and related prenyltransferases	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark hydroxybenzoate octaprenyltransferase	IPR000537: UbiA prenyltransferase p-hydroxybenzoate: octaprenyltransferase	4-hydroxybenzoate polyprenyltransferase	similar to Salmonella typhi CT18 4-hydroxybenzoate octaprenyl transferase 4-hydroxybenzoate octaprenyl transferase	4-hydroxybenzoate octaprenyltranferase	similar to BR0415, 4-hydroxybenzoate octaprenyltransferase UbiA, 4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate octaprenyltransferase	4-hydroxybenzoate-octaprenyl transferase	4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE	4-hydroxybenzoate octaprenyltransferase	Putative 4-hydroxybenzoate octaprenyltransferase	probable 4-hydroxybenzoate-octaprenyltransferase	Similar to sp|O52366|UBIA_PROST sp|P57970|UBIA_PASMU sp|P26601|UBIA_ECOLI rp||ubiA rc||ubiA sp|Q10252|COQ2_SCHPO; Ortholog to ERGA_CDS_05990 4-hydroxybenzoate octaprenyltransferase	
RICPR00649	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Similar to sp|Q9ZCN6|SYV_RICPR; Ortholog to ERGA_CDS_00680 Valyl-tRNA synthetase	valyl-tRNA synthetase	COG0525 ValS valyl-tRNA synthetase similar to NP_360690.1; go_process: 0006418 valyl-tRNA synthetase	Similar to Rickettsia conorii valyl-tRNA synthetase ValS or rc1053 SWALL:Q92GR9 (EMBL:AE008656) (812 aa) fasta scores: E(): 3.5e-56, 39.75% id in 825 aa, and to Thermotoga maritima isoleucyl-tRNA synthetase IleS or tm1361 SWALL:SYI_THEMA (SWALL:P46213) (919 aa) fasta scores: E(): 2.7e-24, 24.4% id in 881 aa class I tRNA synthetase (I, L, M and V)	Valyl-tRNA synthetase	Similar to sp|Q9ZCN6|SYV_RICPR; Ortholog to ERWE_CDS_00710 Valyl-tRNA synthetase	valyl-tRNA synthetase	Valyl-tRNA synthetase	Aminoacyl-tRNA synthetase, class Ia	putative valyl-tRNA synthetase identified by similarity to SP:Q05873; match to protein family HMM PF00133	aminoacyl-tRNA synthetase, class Ia	Valyl-tRNA synthetase	valyl-tRNA synthetase identified by similarity to SP:Q58413; match to protein family HMM PF00133; match to protein family HMM TIGR00422	valyl-tRNA synthetase identified by similarity to SP:O26861; match to protein family HMM PF00133; match to protein family HMM TIGR00422	transcript_id=ENSFCAT00000002597	TRNA synthetase, valyl/leucyl, anticodon-binding	transcript_id=ENSSTOT00000013133	Valyl-tRNA synthetase Catalyzes the formation of valyl-tRNA(Val) fromvaline and tRNA(Val) Orthologue of Tfu_1936_BL0395	tRNA synthetase, valyl/leucyl, anticodon-binding KEGG: fra:Francci3_1314 aminoacyl-tRNA synthetase, class Ia	Valyl-tRNA synthetase	Valyl-tRNA synthetase	Valyl-tRNA synthetase Evidence 2b : Function of strongly homologous gene; Product type e : enzyme	Valyl-tRNA synthetase	Putative valyl-tRNA synthetase	Valyl-tRNA synthetase	ValS protein	locus:Cre-vrs-1	
RICPR00650	Uncharacterized protein RP688	Putative uncharacterized protein	LPS biosynthesis protein	LicD protein family	LicD family protein	
RICPR00651	Uncharacterized protein RP689	Putative uncharacterized protein	LPS biosynthesis protein	LicD protein family	
RICPR00652	DNA recombination protein rmuC homolog	DNA recombination protein rmuC homolog	Similar to conserved hypothetical protein hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	RmuC family, DNA recombination	IPR003798: Protein of unknown function DUF195 putative inner membrane protein	DNA recombination protein rmuC homolog	similar to Salmonella typhi CT18 putative membrane protein putative membrane protein	Similar to Zymomonas mobilis DNA recombination protein RmuC homolog SWALL:RMUC_ZYMMO (SWALL:Q9REQ3) (448 aa) fasta scores: E(): 1e-18, 30.3% id in 363 aa, and to Haemophilus influenzae DNA recombination protein homolog RmuC or HI0500 SWALL:RMUC_HAEIN (SWALL:P44733) (450 aa) fasta scores: E(): 1.3e-10, 26.92% id in 364 aa putative DNA recombination protein	Putative uncharacterized protein	Putative periplasmic protein	Similar to sp|Q9I4U3|RMUC_PSEAE sp|P27850|RMUC_ECOLI; Ortholog to ERGA_CDS_04640 DNA recombination protein rmuC homolog	rmuC homolog; COG1322 DNA recombination protein	Similar to: HI0500, RMUC_HAEIN DNA recombination protein RmuC	Uncharacterized BCR Hypothetical protein	Putative uncharacterized protein	Similar to Q87TH5 Conserved hypothetical protein from Vibrio parahaemolyticus (514 aa). FASTA: opt: 1129 Z-score: 1083.4 E(): 1.9e-52 Smith-Waterman score: 1132; 42.000 identity in 450 aa overlap ORF ftt0659 DNA recombination protein RmuC family protein	DNA recombination protein RmuC	Similar to Zymomonas mobilis DNA recombination protein RmuC homolog SWALL:RMUC_ZYMMO (SWALL:Q9REQ3) (448 aa) fasta scores: E(): 2.3e-22, 27.41% id in 383 aa putative secreted protein	DNA recombination protein rmuC	conserved hypothetical protein	Nuclease of restriction endonuclease-like fold, RmuC family	Similar to sp|Q9I4U3|RMUC_PSEAE sp|P27850|RMUC_ECOLI; Ortholog to ERWE_CDS_04740 DNA recombination protein rmuC homolog	ortholog to Escherichia coli bnum: b3832 putative membrane protein	identified by match to protein family HMM PF02646 DNA recombination protein rmuC homolog	identified by match to protein family HMM PF02646 RmuC domain protein family	Protein of unknown function DUF195	Uncharacterized protein	Code: S; COG: COG1322 putative alpha helix chain	

RICPR00654	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	Residues 1 to 424 of 424 are 100 pct identical to residues 1 to 424 of a 424 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286180.1 ATP-dependent specificity component of clpP serine protease, chaperone	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	conserved gene ATP-dependent Clp protease, ATP binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	identified by similarity to EGAD:37699; match to protein family HMM PF00004; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ClpX ATP-dependent clp protease ATP-binding subunit	ATP-dependent Clp protease ATP-binding subunit ClpX	identified by match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease subunit X	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease ATP-binding subunit clpX	identified by similarity to SP:P50866; match to protein family HMM PF00004; match to protein family HMM TIGR00382 ATP-dependent Clp protease, ATP-binding subunit ClpX	ATP-dependent Clp protease ATP-binding subunit clpX	ATP-dependent Clp protease	ATP-dependent Clp protease ATP-binding subunit clpX	Mb2484c, clpX, len: 426 aa. Equivalent to Rv2457c, len: 426 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 426 aa overlap). Probable clpX, ATP-dependent clp protease ATP-binding subunit clpX (EC 3.4.-.-), equivalent to Q9CBY6|CLPX|ML1477 ATP-DEPENDENT CLP PROTEASE ATP-BINDING PROTEIN from Mycobacterium leprae (426 aa), FASTA scores: opt: 2652, E(): 1.4e-142, (96.0% identity in 426 aa overlap). Also highly similar to others e.g. Q9F316|CLPX from Streptomyces coelicolor (428 aa) FASTA scores: opt: 2178, E(): 8.2e-116, (77.8% identity in 428 aa overlap); P50866|CLPX_BACSU from Bacillus subtilis (420 aa), FASTA scores: opt: 1788, E(): 8.5e-94, (63.6% identity in 426 aa overlap); P33138|CLPX_ECOLI from Escherichia coli (423 aa), FASTA scores: opt: 1694, E(): 1.7e-88, (62.4% identity in 415 aa overlap); etc. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE CLPX CHAPERONE FAMILY. PROBABLE ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX	
RICPR00655	RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE	Ribosomal-protein-serine N-acetyltransferase	Acetyltransferase protein	acetyltransferase (GNAT) family; Molecular Function: N-acetyltransferase activity (GO:0008080) GCN5-related N-acetyltransferase	ribosomal-protein-alanine acetyltransferase	Acetyl transferase	ribosomal-protein-S5-alanine acetyltransferase	hypothetical protein, similar to ribosomal-protein-serine N-acetyltransferase	Ribosomal-protein-alanine acetyltransferase	Ribosomal-protein-alanine acetyltransferase	GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase	Acetyltransferase	hypothetical protein similarity to COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins	GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase KEGG: bur:Bcep18194_B1117 GCN5-related N-acetyltransferase	GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase KEGG: bha:BH0699 ribosomal-protein-alanine N-acetyltransferase	Putative acetyltransferase	GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase KEGG: eca:ECA3191 putative acetyltransferase	GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase KEGG: son:SO1834 acetyltransferase, GNAT family	Hypothetical protein	GCN5-related N-acetyltransferase	Ribosomal-protein-alanine acetyltransferase	GCN5-related N-acetyltransferase	Ribosomal-protein-alanine acetyltransferase	GCN5-related N-acetyltransferase	Ribosomal-protein-alanine acetyltransferase	Ribosomal-protein-alanine acetyltransferase	pseudo	ribosomal-protein-alanine acetyltransferase	
RICPR00656	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	predicted transcription regulator, ExsB family	7-cyano-7-deazaguanine synthase	Highly similar to transcriptional regulator ExsB hypothetical protein	conserved gene ExsB protein	Highly similar to transcriptional regulator ExsB hypothetical protein	ExsB family transcription regulator	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 ExsB	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	identified by match to protein family HMM TIGR00364 ExsB	Succinoglycan biosynthesis transcriptional regulator protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark transcriptional regulator	similar to BR1972, exsB protein exsB protein	7-cyano-7-deazaguanine synthase	hypothetical ATPase	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	7-cyano-7-deazaguanine synthase	7-cyano-7-deazaguanine synthase	possible succinoglycan biosynthesis regulator Predicted PP-loop superfamily ATPase	similar to queC gene product; involved in queuosine biosynthesis	transcriptional regulator	Hypothetical transcription regulator	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 exsB protein	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 exsB protein	ExsB	ExsB	
RICPR00657	Putative export ATP-binding/permease protein RP696	multidrug ABC transporter ATP-binding protein	Multidrug resistance protein	Multidrug resistance protein	transcript_id=ENSOGAT00000006752	ABC transporter permease and ATP-binding protein ATP-binding cassette (ABC) transporters form a large family of proteins responsible for translocation of a variety of compounds across biological membranes. They are composed of two transmembrane domains responsible for binding and transport and two nucleotide-binding domains responsible for coupling the energy of ATP hydrolysis to conformational changes in the TMDs. Similar to TREMBL:Q87G83 (52% identity); TREMBL:Q9K1A3 (61% identity); SWISSPROT:Q57180 (60% identity). Pfam (PF00005): ABC transporter. TMHMM reporting five transmembrane helices. TC (3.A.1): The ATP-binding Cassette (ABC) Superfamily. Specificity unclear	Putative ABC transporter ATP-binding protein	Multidrug resistance protein	Multidrug resistance protein	Multidrug resistance protein	Multidrug resistance protein	hypothetical protein	Multidrug resistance protein	Multidrug resistance ABC transporter ATP-binding and permease protein	Multidrug resistance ABC transporter ATP-binding and permease protein	Putative lipid A export ATP-binding/permease protein MsbA	ABC transporter related	jgi|Capca1|193301|fgenesh1_pg.C_scaffold_20000029	
RICPR00658	Uncharacterized protein RP697	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00659	BICYCLOMYCIN RESISTANCE PROTEIN	Similar to bicyclomycin resistance protein Bcr	Bicyclomycin resistance protein	possible multidrug efflux transporter, MFS family	Similar to AAO91456 Drug resistance transporter, Bcr/Cfl family from Coxiella burnetii (409 aa). FASTA: opt: 427 Z-score: 505.5 E(): 2.6e-20 Smith-Waterman score: 442; 29.966 identity in 297 aa overlap. Contains an in-frame stop codon after aa 57. Truncation at the C-terminal according to FASTA hits ORF ftt1618 pseudo major facilitator superfamily (MSF) transport protein, pseudogene	Weakly similar to Listeria monocytogenes hypothetical protein Lmo1250 SWALL:Q8Y7M4 (EMBL:AL591978) (401 aa) fasta scores: E(): 4.4e-09, 21.61% id in 384 aa, and to Escherichia coli tetracycline resistance protein, class B TetA SWALL:TCR2_ECOLI (SWALL:P02980) (401 aa) fasta scores: E(): 1.3e-06, 21.82% id in 339 aa putative integral membrane transport protein	permease; possible multidrug resistance protein	MFS type drug exporter Bicyclomycin resistance protein	MFS-type bicyclomycin resistance protein	Transporter, MFS superfamily COG2807 [P] Cyanate permease	major facilitator superfamily (MFS) transporter	transcript_id=ENSGACT00000026768	transporter, putative probable CC1133; identified by match to protein family HMM PF07690	hypothetical protein similarity to COG0477 Permeases of the major facilitator superfamily	major facilitator family transporter identified by match to protein family HMM PF07690	pseudo major facilitator superfamily (MSF) transport protein, pseudogene Similar to AAO91456 Drug resistance transporter,Bcr/Cfl family from Coxiella burnetii (409 aa).  FASTA: opt: 427 Z-score: 505.5 E(): 2.6e-20 Smith-Waterman score: 442; 29.966 identity in 297 aa overlap. Contains an in-frame stop codon after aa 57. Truncation at the C-terminal according to FASTA hits ORF ftt1618	permease of the major facilitator superfamily	D-Glucose-proton symporter Orthologue of BL1631	permease of the major facilitator superfamily	Major facilitator superfamily (MFS) multidrug efflux pump, Bcr/CflA subfamily	Arabinose efflux permease, putative	conserved hypothetical intergral membrane protein membrane protein	putative permease	Magnaporthe grisea hypothetical protein	Fucose permease	Glucose/galactose transporter	Bicyclomycin resistance protein	Major facilitator superfamily protein	
RICPR00660	Putative uncharacterized protein RP699	Lipoprotein releasing system transmembrane protein	DUF214	Probable lipoprotein releasing system transmembrane	Similar to ABC transporter, permease component hypothetical protein	conserved gene lipoprotein ABC transporter	Similar to ABC transporter, permease component hypothetical protein	Lipoprotein releasing system trasmembrane protein	Lipoprotein-releasing system transmembrane protein lolC	identified by match to protein family HMM PF02687 permease, putative	Mb1013, -, len: 423 aa. Equivalent to 5' end of Rv0987, len: 855 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 423 aa overlap). Probable transmembrane protein ABC transporter supposed involved in transport of adhesion component (see citation below), whose N-terminus shows similarity with hypothetical proteins, generally transmembrane proteins, e.g.  CAB96016.1|AL360055 putative ABC transport system integral membrane protein from Streptomyces coelicolor (855 aa); P44252|YCFU_HAEIN|HI1555 HYPOTHETICAL PROTEIN from Haemophilus influenzae (393 aa), FASTA scores: opt: 265, E(): 1.7e-09, (23.6% identity in 402 aa overlap); etc. N- and C-termini respectively show similarity to O32735 ATTF PROTEIN (420 aa), FASTA scores: E(): 1e-09, (26.7% identity in 430 aa overlap), and G2340078 ATTG PROTEIN (359 aa), FASTA scores: E(): 2.7e-08, (27.8% identity in 356 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop). REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, Rv0987 exists as a single gene. In Mycobacterium bovis, a single base transition (g-a) introduces a stop codon that splits Rv0987 in two parts, Mb1013 and Mb1014. PROBABLE ADHESION COMPONENT TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipoprotein releasing system transmembrane protein	Putative uncharacterized protein	similar to BR0823, ABC transporter, permease protein ABC transporter, permease protein	Lipoprotein releasing system transmembrane protein	Putative	Putative integral membrane protein	Hypothetical protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter transport protein of outer membrane lipoproteins (ABC superfamily, membrane)	conserved family - putative ABC-transporter hypothetical protein	Lipoprotein ABC transporter, permease protein LolE	involved in lipoprotein release; COG4591 ABC-type transport system	Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE or B1118 SWALL:LOLE_ECOLI (SWALL:P75958) (413 aa) fasta scores: E(): 8.1e-13, 23.44% id in 418 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein BT2838 SWALL:Q8A3W6 (EMBL:AE016937) (408 aa) fasta scores: E(): 1.2e-122, 78.53% id in 410 aa, and to Porphyromonas gingivalis W83 membrane protein, putative PG0922 SWALL:AAQ66057 (EMBL:AE017175) (407 aa) fasta scores: E(): 4.3e-47, 35.81% id in 416 aa putative lipoprotein releasing system transmembrane protein	Similar to Q83CV1 Putative lipoprotein ABC transporter,permease protein from Coxiella burnetii (414 aa). FASTA: opt: 1273 Z-score: 1436.4 E(): 4.1e-72 Smith-Waterman score: 1273; 48.104 identity in 422 aa overlap lipoprotein releasing system, subunit C,putative membrane protein	lipoprotein releasing system transmembrane protein	ABC-type transport system, involved in lipoprotein release, permease component	ortholog to Escherichia coli bnum: b1116; MultiFun: Cell structure 6.1; Transport 4.3.A.1.m, 4.S.106 transport protein of outer membrane lipoproteins (ABC superfamily, membrane)	Lipoprotein releasing system, transmembrane protein, LolC/E family	LolC/E family Lipoprotein releasing system, transmembrane protein	
RICPR00661	Lipoprotein-releasing system ATP-binding protein lolD	Lipoprotein releasing system ATP-binding protein LolD	ABC transporter ATP-binding protein	Lipoprotein releasing system ATP-binding protein LolD	Lipoprotein releasing system ATP-binding protein LolD	Lipoprotein releasing system ATP-binding protein LolD	lipoprotein releasing system ATP-binding protein	Lipoprotein releasing system ATP-binding protein LolD	Lipoprotein releasing system ATP-binding protein	

RICPR00663	Putative uncharacterized protein RP702	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 CBS domain protein	Transmembrane CBS domain family protein	similar to BR2027, CBS domain protein CBS domain protein	Possible CorC/HlyC family of putative transporters	Similar to rc||RC1079 rp||RP702 sp|Q57017|YFJD_HAEIN sp|P37908|YFJD_ECOLI sp|P74409|Y260_SYNY3 sp|P54505|YQHB_BACSU sp|O05241|YUGS_BACSU; Ortholog to ERGA_CDS_02040 Conserved hypothetical protein	magnesium and cobalt efflux protein CorB	Similar to Cytophaga johnsonae gliding motility protein GldE SWALL:Q9EZL7 (EMBL:AF287009) (431 aa) fasta scores: E(): 1.9e-68, 43.31% id in 441 aa, and to Bacteroides thetaiotaomicron hemolysin-related protein, containing CBS domain BT1496 SWALL:AAO76603 (EMBL:AE016932) (352 aa) fasta scores: E(): 3.1e-119, 87.71% id in 350 aa putative transmembrane CorC/HlyC family transporter associated protein	conserved hypothetical protein	Similar to rc||RC1079 rp||RP702 sp|Q57017|YFJD_HAEIN sp|P37908|YFJD_ECOLI sp|P74409|Y260_SYNY3 sp|P54505|YQHB_BACSU sp|O05241|YUGS_BACSU; Ortholog to ERWE_CDS_02090 Conserved hypothetical protein	identified by match to protein family HMM PF00571; match to protein family HMM PF03471 CBS domain protein	Hemolysin homolog	similar to gi|27467531|ref|NP_764168.1| [Staphylococcus epidermidis ATCC 12228], percent identity 72 in 333 aa, BLASTP E(): e-138 conserved hypothetical protein	CBS domain:CBS:Transporter associated domain	conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type m : membrane component putative membrane protein	protein of unknown function DUF21	CBS domain protein identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471	conserved hypothetical protein	probable hemolysin	protein of unknown function DUF21	conserved hypothetical protein	Hemolysin-like protein	putative Mg2+ and Co2+ transporter CorB COG4536	CBS/transporter associated domain protein identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471	CBS-domain protein	Membrane protein, probable	Hypothetical protein precursor	Putative membrane protein precursor	
RICPR00664	CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCMF	Putative cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein	cytochrome C-type biogenesis protein CcmF	conserved gene cytochrome c-type biogenesis protein CcmF	cytochrome C-type biogenesis protein CcmF	C-type cytochrome biogenesis membrane protein	Cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein CcmF	Cytochrome c biogenesis factor	similar to BR0609, cytochrome c-type biogenesis protein CcmF CcmF, cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein cycK	Putative cytochrome c-type biogenesis protein	Similar to sp|P45403|CCMF_BRAJA sp|P45037|CCMF_HAEIN sp|P45404|CCMF_RHIME sp|P52225|CCMF_PSEFL; Ortholog to ERGA_CDS_00810 Cytochrome c-type biogenesis protein cycK	COG1138 CcmF cytochrome c biogenesis factor; go_component: 0016020 cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein CcmF	COG1138 cytochrome c biogenesis factor	Similar to: HI1094, CCMF_HAEIN cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein CcmF	Cytochrome c biogenesis factor	Cytochrome c-type biogenesis protein	Cytochrome c-type biogenesis protein CysK	identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353 cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein	Similar to sp|P45403|CCMF_BRAJA sp|P45037|CCMF_HAEIN sp|P45404|CCMF_RHIME sp|P52225|CCMF_PSEFL; Ortholog to ERWE_CDS_00840 Cytochrome c-type biogenesis protein cycK	identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353 cytochrome c-type biogenesis protein CcmF	identified by similarity to SP:P45404; match to protein family HMM PF01578; match to protein family HMM TIGR00353 cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein CcmF	Cytochrome c-type biogenesis protein CcmF	
RICPR00665	Outer membrane protein B	Outer membrane protein	cell surface antigen Sca5, 168 kDa Outer membrane protein B	Filamentous haemagglutinin-like	Outer membrane autotransporter barrel	Hep_Hag family protein/haemagluttinin motif family protein/YadA-like domain protein identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662	probable cell surface adhesin	Outer membrane autotransporter barrel	Outer membrane autotransporter barrel	outer membrane autotransporter barrel domain TIGRFAM: outer membrane autotransporter barrel domain PFAM: Autotransporter beta- domain protein; Haemagluttinin repeat-containing protein KEGG: sat:SYN_02546 outer membrane protein	outer membrane autotransporter barrel domain TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein PFAM: Autotransporter beta- domain protein KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel	serine protease, subtilase family identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601	Putative haemagglutinin-like (Or adhesin-like) with a signal peptide	outer membrane autotransporter barrel domain TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein PFAM: Autotransporter beta-domain Haemagluttinin KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel	Membrane-anchored cell surface protein	Putative uncharacterized protein	Autotransporter	Outer membrane autotransporter barrel protein	Outer membrane protein B	Outer membrane autotransporter barrel domain precursor	Outer membrane protein B	Autotransporter	Surface-exposed protein	outer membrane protein B	Outer membrane protein B	Putative uncharacterized protein	Outer membrane autotransporter barrel domain protein precursor	Outer membrane autotransporter barrel domain	
RICPR00666	Putative uncharacterized protein RP706	Beta-hexosaminidase	Beta-hexosaminidase	Putative hexosaminidase protein	Beta-hexosaminidase	similar to glycosyl hydrolase hypothetical protein	conserved gene glycosyl hydrolase	similar to glycosyl hydrolase hypothetical protein	identified by similarity to SP:P75949; match to protein family HMM PF00933 beta-N-acetylhexosaminidase, putative	Beta-hexosaminidase	Beta-hexosaminidase	Beta-N-acetylhexosaminidase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark N-acetyl-beta-glucosaminidase	IPR001764: Glycoside hydrolase, family 3, N-terminal putative glycosyl hydrolase	similar to Salmonella typhi CT18 putative glycosyl hydrolase putative glycosyl hydrolase	similar to BR0879, glycosyl hydrolase, family 3 glycosyl hydrolase, family 3	Beta-hexosaminidase	Beta-hexosaminidase	Putative hexosaminidase	Beta-N-acetylhexosaminidase, putative	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme beta-N-acetyl-D-glucosaminidase	Beta-hexosaminidase	COG1472 glycosyl hydrolase	anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase	N-acetyl-beta-glucosaminidase; Beta-N-acetylhexosaminidase; Similar to: HI0959, NAGZ_HAEIN beta-hexosaminidase	Beta-glucosidase-related glycosidases BglX protein	Beta-hexosaminidase	Similar to Q8KG78 Glycosyl hydrolase, family 3 from Chlorobium tepidum (372 aa). FASTA: opt: 811 Z-score: 919.2 E(): 2.4e-43 Smith-Waterman score: 811; 40.822 identity in 365 aa overlap. Contains a frameshift after aa 28 ORF ftt1565c pseudo glycosyl hydrolase, family 3, pseudogene	Beta-glucosidase-related glycosidase	

RICPR00668	Histone-like DNA-binding protein	Integration host factor alpha-subunit	Integration host factor, alpha subunit	Histone-like DNA-binding protein	Integration host factor alpha-subunit	integration host factor, alpha subunit	histone family protein DNA-binding protein PFAM: histone family protein DNA-binding protein KEGG: gme:Gmet_1417 histone-like DNA-binding protein	Integration host factor alpha-subunit	Histone family protein DNA-binding protein	Histone family protein DNA-binding protein	Integration host factor alpha-subunit	Integration host factor alpha-subunit	Integration host factor alpha-subunit	Histone family protein DNA-binding protein	integration host factor alpha-subunit	Integration host factor, alpha subunit	Integration host factor, alpha subunit	Integration host factor subunit alpha	Integration host factor alpha-subunit	Integration host factor alpha-subunit	









RICPR00672	Putative ankyrin repeat protein RP714	transcript_id=ENSOGAT00000016867	Ankyrin PFAM: Ankyrin KEGG: gme:Gmet_0162 ankyrin	FOG: Ankyrin repeat-like protein	jgi|Helro1|145664	26S proteasome non-ATPase regulatory subunit 10 (26S proteasome regulatory subunit p28)(Gankyrin) [Source:UniProtKB/Swiss-Prot;Acc:O75832]	jgi|Capca1|57863|gw1.208.58.1	Ankyrin	



RICPR00673	Putative uncharacterized protein RP716	

RICPR00674	LIPID A BIOSYNTHESIS LAUROYL ACYLTRANSFERASE	identified by similarity to SP:P24187; match to protein family HMM PF03279 lipid A biosynthesis lauroyl acyltransferase, putative	Lipid A biosynthesis lauroyl acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	identified by similarity to OMNI:NTL01HP00264; match to protein family HMM PF03279 lipid A biosynthesis lauroyl acyltransferase	Lipid A lauroyl acyltransferase protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A biosynthesis lauroyl acyltransferase	Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis	similar to BR0851, lipid A biosynthesis lauroyl acyltransferase, hypothetical lipid A biosynthesis lauroyl acyltransferase, hypothetical	Lipid A biosynthesis lauroyl acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	Putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE	Putative acetyltransferase	lipid A biosynthesis lauroyl acyltransferase	heat shock protein B; Similar to: HI1527, HTRB_HAEIN lipid A biosynthesis lauroyl acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis lauroyl acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis lauroyl acyltransferase	identified by match to protein family HMM PF03279; match to protein family HMM TIGR02207 lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	Bacterial lipid A biosynthesis acyltransferase	lipid A biosynthesis acyltransferase	lipid A biosynthesis acyltransferase	lipid A biosynthesis lauroyl acyltransferase	lipid A biosynthesis acyltransferase	
RICPR00675	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Residues 1 to 328 of 328 are 99 pct identical to residues 1 to 328 of a 328 aa protein from Escherichia coli K12 ref: NP_415435.1 putative EC 1.2 enzyme	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	conserved gene tetraacyl disaccharide 4'-kinase	Similar to tetraacyldisaccharide 4'-kinase hypothetical protein	identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682 tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	identified by similarity to SP:P27300; match to protein family HMM PF02606 tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipid A 4'-kinase	IPR003758: Tetraacyldisaccharide-1-P 4'-kinase tetraacyldisaccharide 4' kinase (lipid A 4'kinase)	similar to Salmonella typhi CT18 tetraacyldisaccharide 4'-kinase tetraacyldisaccharide 4'-kinase	Similar to Chlamydia pneumoniae tetraacyldisaccharide 4'-kinase LpxK or cpn0529 or cp0223 SWALL:LPXK_CHLPN (SWALL:Q9Z823) (365 aa) fasta scores: E(): 2.3e-86, 60.1% id in 366 aa, and to Francisella novicida tetraacyldisaccharide 4'-kinase LpxK or ValB SWALL:LPXK_FRANO (SWALL:Q47909) (322 aa) fasta scores: E(): 1.1e-18, 30.66% id in 300 aa putative tetraacyldisaccharide 4'-kinase	similar to BRA0216, tetraacyldisaccharide 4-kinase LpxK, tetraacyldisaccharide 4-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Tetraacyldisaccharide 4'-kinase	Putative tetraacyldisaccharide kinase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)	Tetraacyldisaccharide 4'-kinase	
RICPR00676	DNA ligase	DNA ligase	DNA ligase	Residues 1 to 671 of 671 are 99 pct identical to residues 1 to 671 of a 671 aa protein from Escherichia coli K12 ref: NP_416906.1 DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	Lig	DNA ligase	DNA ligase	DNA ligase	DNA ligase	conserved gene DNA ligase	DNA ligase	DNA ligase	identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	DNA ligase	NAD-dependent DNA ligase	DNA ligase	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	DNA ligase	identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575 DNA ligase, NAD-dependent	
RICPR00677	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Residues 1 to 375 of 375 are 100 pct identical to residues 1 to 375 of a 375 aa protein TGT_SHIFL sp: Q54177 queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) (Virulence-associated protein VACC)	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Similar to queuine tRNA-ribosyltransferase hypothetical protein	conserved gene queuine/archaeosine tRNA-ribosyltransferase	Similar to queuine tRNA-ribosyltransferase hypothetical protein	Queuine tRNA-ribosyltransferase	identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	tRNA-guanine transglycosylase	identified by similarity to SP:P28720; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	identified by similarity to SP:P19675; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	InterProMatches:IPR004803, IPR002616; Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479), Biological Process: queuosine biosynthesis (GO:0008616), Biological Process: tRNA modification (GO:0006400), Molecular Function: queuine tRNA-ribosyltransferase activity (GO:0008479 tRNA-guanine transglycosylase	queuine tRNA-ribosyltransferase	Queuine tRNA-ribosyltransferase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark queuine tRNA-ribosyltransferase	
RICPR00678	Uncharacterized protein RP722	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00679	Uncharacterized protein RP723	unknown	
RICPR00680	Putative uncharacterized protein RP724	Putative membrane protein	Mce related protein	Probable signal peptide protein	Similar to YrbD protein of Escherichia coli	similar to unknown protein hypothetical protein	conserved gene toluene tolerance protein Ttg2C	similar to unknown protein hypothetical protein	identified by match to protein family HMM PF02470 conserved hypothetical protein	Probable ABC transport system substrate-binding protein	Toluene tolerance protein	IPR003399: Mce4/Rv3499c/MTV023.06c protein putative ABC superfamily (bind_prot) transport protein	ABC-type transport system involved in resistance to organic solvents, periplasmic component	similar to Salmonella typhi CT18 possible exported protein possible exported protein	Toluene tolerance protein	Conserved putative membrane protein	Putative outer membrane transport protein	Similar to rc||RC1106 rp||RP724; Ortholog to ERGA_CDS_01180 ABC transporter substrate binding protein	Evidence 2b : Function of strongly homologous gene; Product type t : transporter toluene tolerance efflux transporter (ABC superfamily, peri-bind)	conserved family - putative ABC transporter hypothetical protein	Putative uncharacterized protein	COG1463 ABC transporter substrate-binding protein	toluene tolerance protein TTG2C	Similar to: HI1085, YRBD_HAEIN conserved ABC-type transport system protein, periplasmic component	Permease component of an ABC-transporter Hypothetical protein	Toluene tolerance ABC transporter, periplasmic substrate-binding protein	Similar to YRBD_HAEIN P45029 Hypothetical protein HI1085 from Haemophilus influenzae (167 aa). FASTA: opt: 256 Z-score: 320.6 E(): 5.3e-10 Smith-Waterman score: 281; 37.640identity in 178 aa overlap. Contains a frameshift after aa 66 Equivalent to yrbD of yrb operon in E.coli ORF ftt1610 pseudo ABC transporter, periplasmic protein,pseudogene	ABC-type transport system involved in resistance to organic solvents, periplasmic component	Putative ABC superfamily transport protein	
RICPR00681	Uncharacterized protein RP725	NADH:ubiquinone oxidoreductase 17.2 kD subunit	Putative NADH ubiquinone oxidoreductase 17.2 kD subunit	Putative uncharacterized protein	NADH:ubiquinone oxidoreductase 17.2 kDa subunit	Putative uncharacterized protein	Putative uncharacterized protein	NADH-ubiquinone oxidoreductase subunit B17.2 like protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00682	Ribonuclease HI	Residues 38 to 192 of 192 are 100 pct identical to residues 1 to 155 of a 155 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285902.1 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication	Ribonuclease HI	Ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease H	Similar to ribonuclease HI hypothetical protein	conserved gene ribonuclease HI	Similar to ribonuclease HI hypothetical protein	identified by similarity to SP:P00647; match to protein family HMM PF00075 ribonuclease HI	Ribonuclease H	Ribonuclease HI	Ribonuclease H	identified by similarity to SP:P00647; match to protein family HMM PF00075 RNase H	Ribonuclease H protein	Ribonuclease H	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ribonuclease H	Ribonuclease H	Ribonuclease HI	similar to Salmonella typhi CT18 ribonuclease H ribonuclease H	Ribonuclease HI	similar to BR0477, ribonuclease H RnhA, ribonuclease H	Ribonuclease H	Ribonuclease H	Ribonuclease HI	Ribonuclease H	Ribonuclease HI	Similar to sp|Q8YFR3|RNH_BRUME sp|Q9A341|RNH_CAUCR sp|Q985W1|RNH_RHILO sp|Q8UHA7|RNH_AGRT5; Ortholog to ERGA_CDS_07560 Ribonuclease H	
RICPR00683	Putative uncharacterized protein RP727	identified by similarity to GB:AAK24073.1 conserved hypothetical protein	Putative uncharacterized protein	Uncharacterized protein conserved in bacteria	similar to BR1404, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Similar to rc||RC1109 rp||RP727; Ortholog to ERGA_CDS_03450 Conserved hypothetical protein	conserved hypothetical protein similar to ZP_00210636.1 hypothetical protein	COG3814 conserved hypothetical protein	Similar to rc||RC1109 rp||RP727; Ortholog to ERWE_CDS_03490 Conserved hypothetical protein	unknown	Protein of unknown function DUF1321	conserved hypothetical protein	conserved hypothetical protein	conserved hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF1321	conserved hypothetical protein identified by similarity to GB:AAN30317.1; match to protein family HMM PF07031	protein of unknown function DUF1321	unknown	conserved hypothetical protein similarity:fasta; with=UniProt:Q8U561_AGRT5 (EMBL:AE008121); Agrobacterium tumefaciens (strain C58/ATCC 33970).; AGR_C_3712p.; length=168; id 84.211; 171 aa overlap; query 1-171; subject 1-168	Protein of unknown function DUF1321	protein of unknown function DUF1321 PFAM: protein of unknown function DUF1321: (5.5e-58) KEGG: sil:SPO1907 hypothetical protein, ev=3e-61, 70% identity	conserved hypothetical protein identified by similarity to PIR:E97838; match to protein family HMM PF07031	hypothetical conserved protein similar to AGR_C_3712p [Agrobacterium tumefaciens] and SMc01450 [Sinorhizobium meliloti] Similar to entrez-protein:NP_355017.1 Putative location:bacterial cytoplasm Psort-Score: 0.1657	Protein of unknown function DUF1321	conserved hypothetical protein identified by similarity to PIR:F71632; match to protein family HMM PF07031	hypothetical protein COG3814 Uncharacterized protein conserved in bacteria	Uncharacterized protein	

RICPR00684	Putative uncharacterized protein RP730	Putative uncharacterized protein	identified by similarity to GB:CAE28351.1 conserved hypothetical protein	Putative uncharacterized protein	similar to BR1150, conserved hypothetical protein TIGR00148 conserved hypothetical protein TIGR00148	Phosphatidate cytidyltransferase	Hypothetical protein	Protein of unknown function (DUF1009)	Uncharacterized conserved protein	unknown	Protein of unknown function DUF1009	conserved hypothetical protein	COG3494.1, COG3494 conserved hypothetical protein	conserved hypothetical protein	protein of unknown function DUF1009	unknown	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UFL2_AGRT5 (EMBL:AE008064); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu1385 (AGR_C_2562p).  Hypothetical protein Atu1385 (AGR_C_2562p).; length=293; id 68.327; 281 aa overlap; query 7-287; subject 2-282	Protein of unknown function DUF1009	protein of unknown function DUF1009	protein of unknown function DUF1009 PFAM: protein of unknown function DUF1009: (1.9e-50) KEGG: sil:SPO1674 hypothetical protein, ev=3e-89, 61% identity	protein of unknown function DUF1009	hypothetical conserved protein similar to AGR_C_2562p [Agrobacterium tumefaciens] Similar to swissprot:Q8UFL2 Putative location:bacterial inner membrane Psort-Score: 0.1065	Protein of unknown function DUF1009	Hypothetical protein	uncharacterized protein conserved in bacteria	Hypothetical protein	protein of unknown function DUF1009	Hypothetical protein	conserved hypothetical protein cytoplasmic protein	
RICPR00685	Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	identified by similarity to EGAD:9512; match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	dephospho-CoA kinase; Molecular Function: ATP binding (GO:0005524) Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	similar to BR2070, kinase, hypothetical kinase, hypothetical	Dephospho-CoA kinase	conserved hypothetical protein	Dephospho-CoA kinase	Ortholog of S. aureus MRSA252 (BX571856) SAR1767 putative dephospho-CoA kinase	conserved hypothetical protein	best blastp match sp|P58102|COAE_STRPY DEPHOSPHO-COA KINASE (DEPHOSPHOCOENZYME A KINASE) putative dephosphocoenzyme A kinase	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	Dephospho-CoA kinase	COG0237 dephospho-CoA kinase	Dephospho-CoA kinase	Similar to Escherichia coli dephospho-CoA kinase CoaE SW:COAE_ECOLI (P36679) (206 aa) fasta scores: E(): 8e-16, 34.19% id in 193 aa, and to Bacillus subtilis dephospho-CoA kinase CoaE SW:COAE_BACSU (O34932) (197 aa) fasta scores: E(): 1.4e-25, 44.84% id in 194 aa putative dephospho-CoA kinase	Dephospho-CoA kinase	dephospho-CoA kinase	Dephospho-CoA kinase	identified by similarity to EGAD:9512; match to protein family HMM PF01121; match to protein family HMM TIGR00152 dephospho-CoA kinase	ATP/GTP-binding site motif A (P-loop):Dephospho-CoA kinase	Dephospho-CoA kinase	Dephospho-CoA kinase	
RICPR00686	DNA polymerase III subunit epsilon	Residues 1 to 246 of 246 are 99 pct identical to residues 1 to 246 of a 246 aa protein from Escherichia coli gb: AAB08637.1 DNA polymerase III epsilon chain	DNA Pol III Epsilon Chain	DNA polymerase III, epsilon chain	Probable DNA polymerase III (Epsilon chain) protein	DnaQ protein	Probable dna polymerase III (Epsilon chain) protein	DNA polymerase III epsilon chain	Similar to DNA polymerase III, epsilon chain hypothetical protein	conserved gene DNA polymerase III, epsilon subunit	Similar to DNA polymerase III, epsilon chain hypothetical protein	identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406 DNA polymerase III, epsilon subunit	DNA-directed DNA polymerase, epsilon chain	DNA polymerase III, epsilon chain	DNA polymerase III, epsilon subunit	conserved hypothetical protein	DNA polymerase III epsilon subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA polymerase III epsilon chain	Probable DNA polymerase III epsilon subunit	DNA polymerase III, epsilon subunit, 3-5 exonucleolytic proofreading function	DNA polymerase III epsilon subunit	similar to Salmonella typhi CT18 DNA polymerase III epsilon subunit DNA polymerase III epsilon subunit	Similar to Chlamydia pneumoniae DNA polymerase III epsilon chain DnaQ_2 or cpn0655 or cp0092 SWALL:Q9Z7P9 (EMBL:AE001648) (249 aa) fasta scores: E(): 2.9e-86, 87.55% id in 249 aa, and to Bacillus subtilis DNA polymerase III PolC-type or DnaF or MutI SWALL:DPO3_BACSU (SWALL:P13267) (1437 aa) fasta scores: E(): 1.4e-10, 32.7% id in 159 aa putative DNA polymerase III epsilon chain	similar to BR2071, DNA polymerase III, epsilon subunit DnaQ, DNA polymerase III, epsilon subunit	DNA polymerase III epsilon chain	DNA polymerase III epsilon chain	DNA polymerase III, epsilon chain	DNA polymerase III, epsilon chain	Similar to sp|Q92GL1|DP3E_RICCN sp|Q9ZCJ9|DP3E_RICPR; Ortholog to ERGA_CDS_05130 DNA polymerase III, epsilon chain	
RICPR00687	SURF1-like protein	SURF1 family	similar to conserved hypothetical proteins hypothetical protein	conserved gene hypothetical, SURF1 family	similar to conserved hypothetical proteins hypothetical protein	SURF1 family protein	SurF1 family protein	Similar to sp|Q9ZCJ8|SUR1_RICPR sp|Q92GL0|SUR1_RICCN; Ortholog to ERGA_CDS_08720 Surf1-like protein	COG3346 - uncharacterized conserved protein similar to NP_360750.1 surfeit locus protein 1	biogenesis of cytochrome oxidase c surfeit locus protein 1	Similar to sp|Q9ZCJ8|SUR1_RICPR sp|Q92GL0|SUR1_RICCN; Ortholog to ERWE_CDS_08810 Surf1-like protein	Surfeit locus protein 1	conserved hypothetical protein	Surf1 protein	SURF1 family protein	SURF1 family	Surfeit locus protein 1	SURF1 family protein KEGG: sil:SPO3072 SURF1 family protein, ev=3e-65, 57% identity	conserved hypothetical protein identified by similarity to GB:AAS14894.1	transcript_id=ENSGACT00000021134	Hypothetical protein	Cytochrome c oxidase assembly protein Surf1	SURF1 family protein	transcript_id=ENSFCAT00000005828	transcript_id=ENSEEUT00000000207	transcript_id=ENSSTOT00000003689	transcript_id=ENSTBET00000001189	SURF1 family protein KEGG: neu:NE1012 SURF1 family	SurF1 family protein	
RICPR00688	ATP-DEPENDENT NUCLEASE SUBUNIT A	UvrD/REP helicase	RecB protein	Probable homologous recombinational repair protein, atp-dependent exodnase (Exonuclease v) beta subunit	Exodeoxyribonuclease V beta chain	Similar to UvrD/REP helicase family protein hypothetical protein	conserved gene ATP-dependent DNA helicase (UvrD/Rep helicase)	Similar to UvrD/REP helicase family protein hypothetical protein	ATP-dependent helicase/nuclease subunit A	ATP-dependent nuclease subunit A	hypothetical protein	identified by match to protein family HMM PF00580 ATP-dependent DNA helicase, UvrD/Rep family	ATP-dependent exonuclease, subunit A	identified by similarity to PIR:A71805; match to protein family HMM PF00580 ATP-dependent DNA helicase, UvrD/REP family	Double-strand break repair helicase AddA	InterProMatches:IPR000212; involved in initiation stage of recombination,Molecular Function: DNA binding (GO:0003677), Molecular Function: ATP-dependent DNA helicase activity (GO:0004003), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281) ATP-dependent deoxyribonuclease (subunit A)	Exonuclease V, beta chain	ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB	Putative helicase	similar to BR2103, helicase, UvrD/Rep family helicase, UvrD/Rep family	Exodeoxyribonuclease V beta chain	ATP-dependent nuclease subunit A	Similar to rp||addA sp|P57529|EX5B_BUCAI; Ortholog to ERGA_CDS_06470 Putative Exodeoxyribonuclease V beta chain	conserved family - putative ATP-dependent nuclease hypothetical protein	exonuclease V; COG1074 ATP-dependent exoDNAse beta subunit	Similar to: HI1321, EX5B_HAEIN exodeoxyribonuclease V beta chain	Similar to Bacteroides thetaiotaomicron ATP-dependent helicase BT1054 SWALL:AAO76161 (EMBL:AE016930) (1057 aa) fasta scores: E(): 0, 77.86% id in 1057 aa, and to Lactococcus lactis subunit A of ATP-dependent exonuclease RexA or LL0004 SWALL:Q9CJI9 (EMBL:AE006239) (1203 aa) fasta scores: E(): 6.4e-11, 24.95% id in 1090 aa putative helicase	ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) RecB protein	Similar to Q8EF45 Exodeoxyribonuclease V,beta subunit from Shewanella oneidensis (1259 aa). FASTA: opt: 742 Z-score: 770.7 E(): 4.5e-35 Smith-Waterman score: 1544; 30.448identity in 1317 aa overlap Exodeoxyribonuclease V beta chain	
RICPR00689	MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE	Malonyl CoA-acyl carrier protein transacylase	Residues 1 to 309 of 309 are 99 pct identical to residues 1 to 309 of a 309 aa protein from Escherichia coli K12 ref: NP_415610.1 malonyl-CoA-[acyl-carrier-protein] transacylase	Malonyl CoA-Acyl Carrier Transacylase	Malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	FabD protein	Probable malonyl coa-[acyl-carrier-protein] transacylase	Malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	conserved gene S-malonyl transferase	Malonyl CoA-acyl carrier protein transacylase	[acyl-carrier protein] S-malonyltransferase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	Malonyl-CoA-[acyl-carrier-protein] transacylase	malonyl coenzyme A-acyl carrier	identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	malonyl CoA-ACP transacylase	Malonyl CoA-ACP transacylase	Malonyl CoA-acyl carrier protein transacylase	(Acyl-carrier-protein) S-malonyltransferase	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	InterProMatches:IPR004410; Molecular Function: [acyl-carrier protein] S-malonyltransferase activity (GO:0004314), Biological Process: fatty acid biosynthesis (GO:0006633) malonyl CoA-acyl carrier protein transacylase	malonyl CoA-acyl carrier protein transacylase	Malonyl CoA-acyl carrier protein transacylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark malonyl CoA-ACP transacylase	Malonyl CoA-[acyl carrier protein] transacylase	
RICPR00690	ACETYL-COA ACETYLTRANSFERASE	Acetyl-CoA acetyltransferase	identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 acetyl-CoA acetyltransferase	Citation: PMID: 11208803J Bacteriol. 2001 Feb;183(3):1038-46. acetyl-CoA acetyltransferase	Acetyl-CoA C-acetyltransferase	transcript_id=ENSDNOT00000002503	Acetyl-CoA acetyltransferase	putative acetyl-CoA acetyltransferase similarity:fasta; with=UniProt:THIL_PARDE (EMBL:PDPHAA); Paracoccus denitrificans.; phaA; Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA thiolase).; length=391; id 74.805; 385 aa overlap; query 7-391; subject 5-389 similarity:fasta; with=UniProt:Q9AG69_RHIET (EMBL:AF342934); Rhizobium etli.; phaA; Beta-ketothiolase.; length=397; id 89.673; 397 aa overlap; query 1-393; subject 1-397	Acetyl-CoA C-acetyltransferase PFAM: Thiolase: (9.1e-157) KEGG: sil:SPO0326 acetyl-CoA acetyltransferase, ev=0.0, 91% identity	acetyl-CoA acetyltransferase (beta-ketothiolase) protein similar to phbA (SMc03879) [Sinorhizobium meliloti] and PhaA [Rhizobium etli] Similar to entrez-protein:P50174 Putative location:bacterial inner membrane Psort-Score: 0.1404	Acetyl-CoA acetyltransferase	transcript_id=ENSEEUT00000002075	acetyl-CoA acetyltransferase KEGG: hch:HCH_01365 acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase PFAM: Thiolase	transcript_id=ENSMLUT00000000725	Acetyl-CoA acetyltransferase, cytosolic (EC 2.3.1.9)(Cytosolic acetoacetyl-CoA thiolase)(Acetyl-CoA transferase-like protein) [Source:UniProtKB/Swiss- Prot;Acc:Q9BWD1]	acetyl-CoA acetyltransferase	acetyl-CoA acetyltransferases KEGG: rsp:RSP_0745 acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferases PFAM: Thiolase	transcript_id=ENSOPRT00000003748	Acetyl-CoA acetyltransferase	Acetyl-CoA acetyltransferase	Acetyl-CoA acetyltransferase	Acetyl-CoA acetyltransferase	transcript_id=ENSTTRT00000010379	transcript_id=ENSPVAT00000005307	Acetyl-CoA acetyltransferase protein	Acetyl-CoA acetyltransferase, cytosolic (EC 2.3.1.9)(Cytosolic acetoacetyl-CoA thiolase)(Acetyl-CoA transferase-like protein) [Source:UniProtKB/Swiss- Prot;Acc:Q9BWD1]	Acetyl-CoA acetyltransferase, cytosolic (EC 2.3.1.9)(Cytosolic acetoacetyl-CoA thiolase)(Acetyl-CoA transferase-like protein) [Source:UniProtKB/Swiss- Prot;Acc:Q9BWD1]	Acetyl-CoA acetyltransferase	
RICPR00691	POLY-BETA-HYDROXYBUTYRATE POLYMERASE	Poly (3-hydroxybutyric acid) synthase	PHA synthase subunit PhaC	poly (3-hydroxybutyric acid) synthase	poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	Poly-beta-hydroxybutyrate polymerase	Alpha/beta hydrolase fold	Poly-beta-hydroxybutyrate polymerase	putative polyhydroxyalkanoate synthase subunit C similarity:fasta; SWALL:Q8RT55 (EMBL:AY030295); Synechococcus sp. MA19; PhaC; length 364 aa; 354 aa overlap; query 14-367 aa; subject 15-364 aa	Alpha/beta hydrolase fold	Poly-beta-hydroxybutyrate polymerase	Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PFAM: alpha/beta hydrolase fold PHB de-polymerase-like KEGG: btk:BT9727_1208 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	poly (3-hydroxybutyric acid) synthase identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Poly-beta-hydroxybutyrate polymerase	poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit PFAM: alpha/beta hydrolase fold KEGG: xcb:XC_1959 poly (3-hydroxybutyric acid) synthase	poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit identified by similarity to GB:AAD05260.1; match to protein family HMM PF00561; match to protein family HMM TIGR01836	poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	Alpha/beta hydrolase fold	Poly-beta-hydroxybutyrate polymerase	Poly-beta-hydroxybutyrate polymerase	Poly-beta-hydroxybutyrate polymerase	Alpha/beta hydrolase fold-containing protein	Alpha/beta hydrolase fold	poly-beta-hydroxybutyrate polymerase	Poly(3-hydroxyalkanoate) synthetase-like protein	Complete genome, strain B100	Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	Putative polyhydroxyalkanoate synthase subunit C	
RICPR00692	ADP,ATP carrier protein 5	ATP/ADP translocase	ADP/ATP carrier protein	ADP,ATP carrier protein	ATP/ADP translocase	ATP/ADP translocase	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein	ADP,ATP carrier protein homolog	ADP,ATP carrier protein	
RICPR00693	Hemolysin C	Residues 1 to 292 of 292 are 100 pct identical to residues 1 to 292 of a 292 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286383.1 putative transport protein	Putative membrane protein	CBS domain	Putative mg2+ or co2+ transporter protein	Magnesium and cobalt efflux protein CorC	Similar to magnesium and cobalt efflux protein CorC hypothetical protein	conserved gene Mg2+ and Co2+ transporter CorC	Similar to magnesium and cobalt efflux protein CorC hypothetical protein	identified by similarity to GB:AAC62436.1; match to protein family HMM PF00571; match to protein family HMM PF03471 hemolysin, putative	Magnesium and cobalt efflux protein corC	Polar amino acid transporter	Hemolysin protein	Haemolysin-related protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark polar amino acid transporter	transporter protein-putative hemolysin	IPR000644: CBS domain putative CBS domain-containing protein	Hemolysin TlyC, contains CBS domains	similar to Salmonella typhi CT18 haemolysin-related protein haemolysin-related protein	similar to BR2157, CBS domain protein CBS domain protein	Polar amino acid transporter	Hemolysin	Magnesium/cobalt efflux protein CorC	Hypothetical protein	Hemolysin	Similar to sp|O05961|Y740_RICPR; Ortholog to ERGA_CDS_00060 Conserved hypothetical protein	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter magnesium and cobalt efflux protein	conserved family - putative hemolysin hypothetical protein	Magnesium and cobalt efflux protein CorC	
RICPR00694	Putative metalloprotease RP741	Residues 1 to 155 of 155 are 100 pct identical to residues 1 to 155 of a 155 aa protein from Escherichia coli K12 ref: NP_415192.1 orf, conserved hypothetical protein	Putative metalloprotease YPO2618/y1193/YP_1095	Putative metalloprotease SAV1570	Putative metalloprotease WIGBR4470	Putative metalloprotease plu1310	similar to conserved hypothetical protein hypothetical protein	conserved gene metal dependent hydrolase	similar to conserved hypothetical protein hypothetical protein	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 conserved hypothetical protein TIGR00043	identified by similarity to SP:Q8YEA4; match to protein family HMM PF02130; match to protein family HMM TIGR00043 conserved hypothetical protein TIGR00043	Putative metalloprotease CV_4152	Putative metalloprotease XF_0903	Hypothetical UPF0054 protein SE1257	Putative uncharacterized protein	metal-dependent hydrolase	Putative metalloprotease Bfl316	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	IPR002036: Protein of unknown function UPF0054 putative metal-dependent hydrolase	Predicted metal-dependent hydrolase	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR2156, conserved hypothetical protein TIGR00043 conserved hypothetical protein TIGR00043	Putative metalloprotease XAC2464	Putative metalloprotease BQ02120	conserved hypothetical protein	Putative metalloprotease YPTB1111	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR1647 conserved hypothetical protein	conserved hypothetical protein	
RICPR00695	Lipoyl synthase	Lipoyl synthase	Residues 1 to 321 of 321 are 100 pct identical to residues 1 to 321 of a 321 aa protein from Escherichia coli O157:H7 ref: NP_308693.1 lipoate synthesis protein LipA	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	identified by similarity to EGAD:21017; match to protein family HMM PF02546; match to protein family HMM PF04055; match to protein family HMM TIGR00510 lipoate synthase	lipoic acid synthetase	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00510 lipoic acid synthetase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase	Lipoyl synthase 1	Lipoyl synthase	Lipoic acid synthetase	Lipoyl synthase	Mb2241, lipA, len: 311 aa. Equivalent to Rv2218, len: 311 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 311 aa overlap). Probable lipA, lipoic acid synthetase, similar to e.g. SW:LIPA_HAEIN P44463 (42 .6% identity in 291 aa overlap). Equivalent to Z98741|MLCB2 2_12 Mycobacterium leprae cosmid B22; (314 aa). FASTA score : opt: 1836, E(): 0; 86.8% identity in 310 aa overlap Probable lipoate biosynthesis protein A LipA	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipoic acid synthetase	Lipoic acid synthase	IPR003698: Lipoate synthase; IPR006638: Elongator protein 3/MiaB/NifB; IPR007197: Radical SAM lipoate synthase, an iron-sulfur enzyme	Lipoate synthase	similar to Salmonella typhi CT18 lipoic acid synthetase lipoic acid synthetase	Similar to Escherichia coli lipoic acid synthetase LipA or Lip SWALL:LIPA_ECOLI (SWALL:P25845) (321 aa) fasta scores: E(): 5e-41, 40.97% id in 288 aa, and to Chlamydia muridarum lipoic acid synthetase LipA SWALL:LIPA_CHLMU (SWALL:Q9PJI2) (308 aa) fasta scores: E(): 4.5e-89, 75.65% id in 304 aa, and to Saccharomyces cerevisiae lipoic acid synthetase, mitochondrial precursor Lip5 SWALL:LIP5_YEAST (SWALL:P32875) (414 aa) fasta scores: E(): 2.3e-45, 43.05% id in 295 aa lipoic acid synthetase	similar to BR1124, lipoic acid synthetase LipA, lipoic acid synthetase	Lipoyl synthase	
RICPR00696	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase 2	identified by match to protein family HMM PF00464 serine hydroxymethyltransferase	Serine hydroxymethyltransferase	serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Mb0071c, glyA2, len: 425 aa. Equivalent to Rv0070c, len: 425 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 425 aa overlap). Probable glyA2, serine hydroxymethyltransferase (EC 2.1.2.1), equivalent to NP_302318.1|NC_002677 serine hydroxymethyltransferase from Mycobacterium leprae (426 aa). Also highly similar to many e.g. O86565|GLYA_STRCO SERINE HYDROXYMETHYLTRANSFERASE from Streptomyces coelicolor (420 aa); AAK60516.1|AF327063_1|AF327063 serine hydroxymethyltransferase from Corynebacterium glutamicum (434 aa); GLYA_ECOLI|P00477 serine hydroxymethyltransferase from Escherichia coli (417 aa), FASTA scores: opt: 1462, E(): 0, (54.3% identity in 416 aa overlap); etc. Also highly similar to MTV017_46 from Mycobacterium tuberculosis. Contains PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. BELONGS TO THE SHMT FAMILY. COFACTOR: PYRIDOXAL PHOSPHATE. PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2)	COG0112 Glycine-serine hydroxymethyltransferase serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Similar to Chlamydia pneumoniae serine hydroxymethyltransferase GlyA or cpn0521 or cp0232 SWALL:GLYA_CHLPN (SWALL:Q9Z831) (497 aa) fasta scores: E(): 5.9e-168, 82.29% id in 497 aa, and to Bradyrhizobium japonicum serine hydroxymethyltransferase GlyA SWALL:GLYA_BRAJA (SWALL:P24060) (432 aa) fasta scores: E(): 6.5e-45, 40.89% id in 467 aa putative serine hydroxymethyltransferase	serine hydroxymethyl transferase	Serine hydroxymethyltransferase	Ortholog of S. aureus MRSA252 (BX571856) SAR2201 serine hydroxymethyltransferase	serine hydroxymethyl transferase	Serine hydroxymethyltransferase	best blastp match gb|AAK34017.1| (AE006556) putative serine hydroxymethyltransferase [Streptococcus pyogenes M1 GAS] putative serine hydroxymethyltransferase	identified by match to protein family HMM PF00464 serine hydroxymethyltransferase	Serine hydroxymethyltransferase	Similar to Bacillus subtilis serine hydroxymethyltransferase GlyA or GlyC or IPC-34D SWALL:GLYA_BACSU (SWALL:P39148) (415 aa) fasta scores: E(): 1.5e-53, 56.87% id in 422 aa, and to Borrelia burgdorferi serine hydroxymethyltransferase GlyA or BB0601 SWALL:GLYA_BORBU (SWALL:O51547) (417 aa) fasta scores: E(): 6.3e-76, 51.41% id in 424 aa serine hydroxymethyltransferase	Similar to Methylobacterium extorquens serine hydroxymethyltransferase GlyA SWALL:GLYA_METEX (SWALL:P50435) (434 aa) fasta scores: E(): 1.3e-75, 54.06% id in 394 aa serine hydroxymethyltransferase	glycine hydroxymethyltransferase	Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine methylase) (SHMT).,Interconversion of serine and glycine. serine hydroxymethyltransferase	serine hydroxymethyl transferase	
RICPR00697	Uncharacterized hydrolase RP744	identified by match to protein family HMM PF02230 phospholipase/carboxylesterase family protein	Phospholipase/Carboxylesterase	Predicted esterase	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative esterase	conserved family - putative hypothetical protein	Similar to Q83AC9 Carboxylesterase/phospholipase family protein from Coxiella burnetii (200 aa). FASTA: opt: 599 Z-score: 736.0 E(): 4.2e-33 Smith-Waterman score: 599; 45.813 identity in 203 aa overlap ORF ftt0258 Carboxylesterase/phospholipase family protein	similarity to serine esterase	identified by match to protein family HMM PF02230 phospholipase/carboxylesterase family protein	Serine esterase	Code: R; COG: COG0400 conserved hypothetical protein	Phospholipase/Carboxylesterase	pfam02230.8, abhydrolase_2 This family consists of both phospholipases and carboxylesterases with broad substrate specificity, and is structurally related to alpha/beta hydrolases pfam00561. Phospholipase/Carboxylesterase	Code: R; COG: COG0400 conserved hypothetical protein	phospholipase/carboxylesterase family protein identified by similarity to SP:Q53547; match to protein family HMM PF02230	phospholipase/Carboxylesterase	Phospholipase/Carboxylesterase	probable esterase	Serine esterase	Phospholipase/Carboxylesterase	serine esterase	phospholipase/Carboxylesterase PFAM: phospholipase/Carboxylesterase: (4.4e-35) KEGG: sil:SPO2126 phospholipase/carboxylesterase family protein, ev=1e-105, 85% identity	phospholipase/carboxylesterase family protein identified by match to protein family HMM PF02230	Putative uncharacterized protein	Phospholipase/Carboxylesterase	Carboxylesterase	phospholipase/carboxylesterase family protein identified by match to protein family HMM PF02230	Carboxylesterase/phospholipase family protein Similar to Q83AC9 Carboxylesterase/phospholipase family protein from Coxiella burnetii (200 aa). FASTA: opt: 599 Z-score: 736.0 E(): 4.2e-33 Smith-Waterman score: 599; 45.813 identity in 203 aa overlap ORF ftt0258	Putative uncharacterized protein ypfH	
RICPR00698	Probable monothiol glutaredoxin-2	Glutaredoxin-related protein	Residues 1 to 115 of 115 are 100 pct identical to residues 1 to 115 of a 115 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288090.1 orf, conserved hypothetical protein	Putative uncharacterized protein	Glutaredoxin-related protein	YdhD protein	Putative ipr004480 glutaredoxin-related protein	Similar to probable glutaredoxin-like protein YdhD of Escherichia coli	glutaredoxin-like protein	conserved gene glutaredoxin-related protein	glutaredoxin-like protein	promoter active fragment E3	identified by match to protein family HMM TIGR00365 glutaredoxin-related protein	Putative uncharacterized protein	Putative uncharacterized protein	Glutaredoxin-related protein	Glutaredoxin protein	Glutaredoxin	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	putative glutaredoxin protein	Glutaredoxin-related protein	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	similar to BR0835, glutaredoxin-related protein glutaredoxin-related protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Hypothetical protein	Glutaredoxin-related protein	Similar to sp|O05957|GRLA_RICPR; Ortholog to ERGA_CDS_07200 Glutaredoxin-like protein GRLA	
RICPR00699	Endonuclease III	Endonuclease III	Endonuclease III	Residues 1 to 211 of 211 are 99 pct identical to residues 1 to 211 of a 211 aa protein from Escherichia coli K12 ref: NP_416150.1 endonuclease III; specific for apurinic and-or apyrimidinic sites	Endonuclease III	HhH-GPD:Iron-sulfur cluster loop	DNA-(apurinic or apyrimidinic site) lyase endonuclease III	Endonuclease-like protein	Nth protein	Probable endonuclease III protein	Endonuclease III	Endonuclease III	conserved gene endonuclease III	Endonuclease III	DNA-(Apurinic or apyrimidinic site) lyase	identified by similarity to EGAD:24337; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 endonuclease III	Endonuclease III	DNA-(apurinic or apyrimidinic site) lyase	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 endonuclease III	Endonuclease III	endonuclease III, DNA repair	Endonuclease III	Endonuclease-like protein	identified by similarity to SP:P20625; match to protein family HMM PF00730; match to protein family HMM TIGR01083 endonuclease III	Nth	Endonuclease III	Endonuclease III	Mb3698c, nth, len: 245 aa. Equivalent to Rv3674c, len: 245 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 245 aa overlap). Probable nth, endonuclease III (EC 4.2.99.18), equivalent to Q9CB92|NTH|ML2301 PUTATIVE ENDONUCLEASE III from Mycobacterium leprae (272 aa), FASTA scores: opt: 1363, E(): 3.6e-81, (89.4% identity in 226 aa overlap). Also similar to many e.g. Q9XA44|SCH17.03c from Streptomyces coelicolor (250 aa), FASTA scores: opt: 937, E(): 2.2e-55, (61.65% identity in 219 aa overlap); P46303|UVEN_MICLU from Micrococcus luteus (Micrococcus lysodeikticus) (279 aa), FASTA scores: opt: 899, E(): 8.1e-53, (58.45% identity in 248 aa overlap); P73715|END3_SYNY3|NTH|SLR1822 from Synechocystis sp. strain PCC 6803 (219 aa), FASTA scores: opt: 684, E(): 1.7e-38, (52.2% identity in 203 aa overlap); P39788|END3_BACSU|NTH|JOOB from Bacillus subtilis (219 aa), FASTA scores: opt: 552, E(): 1.2e-29, (43.3% identity in 194 aa overlap); etc. Equivalent to AAK48142 from Mycobacterium tuberculosis strain CDC1551 (262 aa) but shorter 17 aa. Contains PS00764 Endonuclease III iron-sulfur binding region signature, and PS01155 Endonuclease III family signature. BELONGS TO THE NTH/MUTY FAMILY. COFACTOR: BINDS A 4FE-4S CLUSTER WHICH IS NOT IMPORTANT FOR THE CATALYTIC ACTIVITY, BUT WHICH IS PROBABLY INVOLVED IN THE PROPER POSITIONING OF THE ENZYME ALONG THE DNA STRAND (BY SIMILARITY). N-terminus extended since first submission (previously 226 aa). PROBABLE ENDONUCLEASE III NTH (DNA-(APURINIC OR APYRIMIDINIC SITE)LYASE) (AP LYASE) (AP ENDONUCLEASE CLASS I) (ENDODEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC)) (DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC))	InterProMatches:IPR005759; Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Cellular Component: intracellular (GO:0005622), Biological Process: base-excision repair (GO:0006284) endonuclease III	

RICPR00700	UPF0011 protein RP747	hypothetical protein	Tetrapyrrole (Corrin/porphyrin) methylase	Residues 1 to 286 of 286 are 99 pct identical to residues 1 to 286 of a 286 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289722.1 orf, conserved hypothetical protein	Putative tetrapyrrole methylase	Possible methyltransferases	Putative uncharacterized protein	YraL protein	Predicted methyl transferas	conserved hypothetical protein	Putative uncharacterized protein	Similar to unknown protein YraL of Escherichia coli	conserved hypothetical protein, putative methyltransferase hypothetical protein	conserved gene tetrapyrrole (corrin/porphyrin) methylase	conserved hypothetical protein, putative methyltransferase hypothetical protein	Methyltransferase	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 methyltransferase, tetrapyrrole family	Conserved hypothetical	corrin/porphyrin methyltransferase	tetrapyrrole methylase family protein	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 tetrapyrrole methylase family protein	Putative uncharacterized protein	tetrapyrrole methylase family protein	UPF0011 protein XF_0552	Hypothetical protein SE2294	Tetrapyrrole methylas family protein	Tetrapyrrole methylase family protein	identified by similarity to SP:Q9ZLS8; match to protein family HMM PF00590; match to protein family HMM TIGR00096 tetrapyrrole methylase family protein	Putative uncharacterized protein	
RICPR00701	Uncharacterized protein RP748	ABC-type branched-chain amino acid transport systems periplasmic component-like	ABC-type transport systems periplasmic component	Putative uncharacterized protein	ABC-type transport systems periplasmic component	ABC-type transport systems periplasmic component	ABC-type transport systems periplasmic component	hypothetical protein	ABC-type transport systems periplasmic component	Putative uncharacterized protein	
RICPR00702	Sec-independent protein translocase protein tatA/E homolog	Sec-independent protein secretion pathway component, TatA	Sec-independent protein translocase protein tatA/E homolog	TatA/E family Twin-arginine translocation protein	twin-arginine translocation protein TatA/E	Twin-arginine translocation protein TatA/E	twin-arginine translocation protein, TatA/E family identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411	Twin-arginine translocation protein TatA	Sec-independent protein secretion pathway components COG1826	putative Sec-independent protein translocase protein similarity:fasta; with=UniProt:TATA_ECOLI (EMBL:AF067848); Escherichia coli.; tatA; Sec-independent protein translocase protein tatA.; length=89; id 42.466; 73 aa overlap; query 1-63; subject 1-73 similarity:fasta; with=UniProt:Q8GGW1_RHILV (EMBL:AF462068); Rhizobium leguminosarum (biovar viciae).; tatA; Sec-independent protein translocase TatA.; length=63; id 100.000; 63 aa overlap; query 1-63; subject 1-63	twin-arginine translocation protein, TatA/E family	twin-arginine translocation protein, TatA/E family identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411	SEC-independent protein translocase protein similar to tatA (Atu1706) [Agrobacterium tumefaciens str. C58] and TatA [Rhizobium leguminosarumbv. viciae] Similar to entrez-protein:Q8UEP9 Putative location:bacterial inner membrane Psort-Score: 0.4482; go_component: integral to membrane [goid 0016021]; go_component: inner membrane [goid 0019866]; go_function: protein transporter activity [goid 0008565]; go_process: intracellular protein transport [goid 0006886]; go_process: protein targeting [goid 0006605]; go_process: protein transport [goid 0015031]; go_process: transport [goid 0006810]; go_process: protein secretion [goid 0009306]	twin-arginine translocation protein, TatA/E family	twin-arginine translocation protein, TatA identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411	twin-arginine translocation protein, TatA/E family	Sec-independent protein translocase protein, tatA/E family	twin-arginine translocation protein, TatA/E family subunit TIGRFAM: twin-arginine translocation protein, TatA/E family subunit PFAM: sec-independent translocation protein mttA/Hcf106 KEGG: rpc:RPC_2513 twin-arginine translocation protein, TatA/E family	Putative Sec-independent protein translocase protein TatA/E	Putative Sec-independent protein translocase protein TatA/E	Putative uncharacterized protein	Twin-arginine translocation protein, TatA/E family subunit	Twin argininte translocase protein A	Twin-arginine translocation protein TatA	Sec-independent protein translocase protein tatA/E homolog	Twin argininte translocase protein A	Twin argininte translocase protein A	Sec-independent protein translocase protein	Putative uncharacterized protein	
RICPR00703	PHOSPHATIDYLGLYCEROPHOSPHATASE A	Probable phosphatidyl-glycerophosphatase hydrolase transmembrane protein	PgpA protein	Phosphatidylglycerophosphatase A	conserved gene phosphatidylglycerophosphatase A (PgpA)	Phosphatidylglycerophosphatase A	identified by similarity to SP:P18200; match to protein family HMM PF04608 phosphatidylglycerophosphatase, putative	Phosphatidylglycerophosphatase	identified by similarity to SP:P18200; match to protein family HMM PF04608 phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Similar to rc||pgpA; Ortholog to ERGA_CDS_01950 Phosphatidylglycerophosphatase A	COG1267 PgpA phosphatidlglycerophosphatase A; go_process: 0006629 phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A PgpA protein	phosphatidylglycerophosphatase A	Similar to rc||pgpA; Ortholog to ERWE_CDS_02000 Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	Best Blastp Hit: pir||G81205 phosphatidylglycerophosphatase (EC 3.1.3.27) A NMA2102 [imported] - Neisseria meningitidis (group B strain MD58, group A strain Z2491) >gi|7225607|gb|AAF40826.1| (AE002394) phosphatidylglycerophosphatase A [Neisseria meningitidis MC58] >gi|7380727|emb|CAB85318.1| (AL162758) phosphatidylglycerophosphatase A [Neisseria meningitidis] COG1267 Phosphatidylglycerophosphatase A conserved hypothetical protein	conserved hypothetical protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type e : enzyme putative phosphatidylglycerophosphatase	phosphatidylglycerophosphatase A identified by similarity to SP:P18200; match to protein family HMM PF04608	Phosphatidylglycerophosphatase	Phosphatidylglycerophosphatase	Phosphatidylglycerophosphatase A	Phosphatidylglycerophosphatase A	phosphatidylglycerophosphatase A PFAM: phosphatidylglycerophosphatase A: (5.1e-30) KEGG: sil:SPO2091 phosphatidylglycerophosphatase, putative, ev=3e-65, 68% identity	phosphatidylglycerophosphatase A identified by similarity to SP:P18200; match to protein family HMM PF04608	
RICPR00704	50S ribosomal protein L21	50S ribosomal protein l21	50S ribosomal protein L21	Residues 1 to 103 of 103 are 100 pct identical to residues 1 to 103 of a 103 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289760.1 50S ribosomal subunit protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50s ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	conserved gene 50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 ribosomal protein L21	50S ribosomal protein L21	LSU ribosomal protein L21P	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	50S ribosomal protein L21	identified by similarity to SP:P02422; similarity to EGAD:23167; match to protein family HMM PF00829; match to protein family HMM TIGR00061 ribosomal protein L21	50S ribosomal protein L21	
RICPR00705	50S ribosomal protein L27	50S ribosomal protein l27	50S ribosomal protein L27	Residues 1 to 85 of 85 are 100 pct identical to residues 1 to 85 of a 85 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289759.1 50S ribosomal subunit protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50s ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	conserved gene 50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	50S ribosomal protein L27	LSU ribosomal protein L27P	50S ribosomal protein L27	identified by similarity to SP:P02427; match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	50S ribosomal protein L27	identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062 ribosomal protein L27	
RICPR00706	Aspartokinase	Aspartokinase	Aspartokinase	InterProMatches:IPR001341, IPR005260; Molecular Function: aspartate kinase activity (GO:0004072), Biological Process: amino acid biosynthesis (GO:0008652) aspartokinase II alpha subunit and beta subunit	Aspartokinase	Aspartokinase	Aspartokinase	Aspartate kinase	Similar to sp|O69077|AK_PSEAE sp|P08495|AK2_BACSU sp|O67221|AK_AQUAE sp|P53553|AK2_BACST; Ortholog to ERGA_CDS_08060 Aspartokinase 2	identified by similarity to SP:P08495; match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Evidence 2b : Function of strongly homologous gene; Product type e : enzyme aspartate kinase	Aspartokinase	Aspartokinase	Aspartate kinase	Aspartate kinase	Aspartokinase (EC 2.7.2.4) (Aspartate kinase) [Contains: Aspartokinase alpha subunit; Aspartokinase beta subunit]. aspartate kinase	Similar to sp|O69077|AK_PSEAE sp|P08495|AK2_BACSU sp|O67221|AK_AQUAE sp|P53553|AK2_BACST; Ortholog to ERWE_CDS_08160 Aspartokinase 2	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 asparate kinase, monofunctional class	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Aspartate kinase region:Aspartate kinase, monofunctional class	Aspartate kinase region:Aspartate kinase, monofunctional class	Aspartate kinase:Aspartate kinase, monofunctional class	Aspartokinase	Best Blastp Hit: pir||F81076 aspartokinase, alpha and beta chains NMB1498 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226740|gb|AAF41854.1| (AE002499) aspartokinase, alpha and beta subunits [Neisseria meningitidis MC58] COG0527 Aspartokinases putative aspartate kinase	aspartate kinase	Aspartokinase	Aspartate kinase	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657 aspartate kinase, monofunctional class	Aspartokinase	
RICPR00707	Putative uncharacterized protein RP754	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00708	PROLINE/BETAINE TRANSPORTER	Proline/betaine transporter	Metabolite transporter, MFS superfamily	major facilitator superfamily MFS_1	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	transporter, MFS superfamily	Proline/betaine transporter	Putative MFS transporter	Proline/betaine transporter	

RICPR00709	Uncharacterized protein RP756	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	



RICPR00711	Putative uncharacterized protein RP758	similar to C-terminal part of conserved hypothetical protein hypothetical protein	Glutamate dehydrogenase	Putative uncharacterized protein	Putative uncharacterized protein	NAD-specific glutamate dehydrogenase protein	PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH	Mb2503c, gdh, len: 1623 aa. Equivalent to Rv2476c, len: 1624 aa, from Mycobacterium tuberculosis strain H37Rv, (99.9% identity in 1624 aa overlap). Probable gdh, glutamate dehydrogenase (EC 1.4.1.2). Highly similar to Q9X7B2|MLCB1610.10|ML1249 HYPOTHETICAL 177.9 KDA PROTEIN from Mycobacterium leprae (1622 aa), FASTA scores: opt: 8630,E(): 0, (81.45% identity in 1634 aa overlap). But highly similar to Q9F0J1|GDH NAD-GLUTAMATE DEHYDROGENASE from Streptomyces clavuligerus (1651 aa), FASTA scores: opt: 3833, E(): 0, (45.8% identity in 1600 aa overlap); (see first citation). Also similar with others e.g.  AAG53963|PA3068|GDHB HYPOTHETICAL (NAD(+)-DEPENDENT GLUTAMATE DEHYDROGENASE from Pseudomonas aeruginosa (1620 aa), FASTA scores: opt: 2214, E(): 1e-124, (40.1% identity in 1561 aa overlap) (see second citation); and Q9Y8G5|GDHB NAD-SPECIFIC GLUTAMATE DEHYDROGENASE from Agaricus bisporus (1029 aa), FASTA scores: opt: 194, E(): 0.00099, (22.7% identity in 647 aa overlap) (see third citation); etc. Contains possible Helix-turn-helix motif at aa 1568 to 1589 (score 1098, +2.93 SD).  REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a 3 bp deletion (cgg-*) leads to a slightly shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (1623 aa versus 1624 aa). PROBABLE NAD-DEPENDENT GLUTAMATE DEHYDROGENASE GDH (NAD-GDH) (NAD-DEPENDENT GLUTAMIC DEHYDROGENASE)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	NAD-specific glutamate dehydrogenase	similar to BR1819, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Similar to rc||RC1174 rp||RP758; Ortholog to ERGA_CDS_03250 Conserved hypothetical protein	conserved family - putative NAD-specific glutamate dehydrogenase hypothetical protein	NAD-specific glutamate dehydrogenase	Putative uncharacterized protein	NAD-specific glutamate dehydrogenase	NAD-glutamate dehydrogenase	conserved hypothetical protein	Similar to rc||RC1174 rp||RP758; Ortholog to ERWE_CDS_03300 Conserved hypothetical protein	identified by match to protein family HMM PF05088 NAD-specific glutamate dehydrogenase	identified by match to protein family HMM PF05088 NAD-glutamate dehydrogenase	NAD-glutamate dehydrogenase	NAD-glutamate dehydrogenase	putative NAD-glutamate dehydrogenase	NAD-specific glutamate dehydrogenase	NAD-glutamate dehydrogenase	ATP/GTP-binding site motif A (P-loop):Bacterial NAD-glutamate dehydrogenase	
RICPR00712	tRNA modification GTPase mnmE	Thiophene and furan oxidizer	tRNA modification GTPase mnmE	Residues 1 to 454 of 454 are 99 pct identical to residues 1 to 454 of a 454 aa protein from Escherichia coli K12 ref: NP_418162.1 GTP-binding protein in thiophene and furan oxidation	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	ThdF	thiophene and furan oxidation protein	tRNA modification GTPase mnmE	tRNA modification GTPase mnmE	Similar to GTPase for tRNA modification trmE hypothetical protein	conserved gene GTP binding protein in thiophene and furan oxidation (GTPase)	Similar to GTPase for tRNA modification trmE hypothetical protein	tRNA modification GTPase mnmE	identified by similarity to EGAD:14211; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	tRNA modification GTPase mnmE	tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase	thiophen and furan oxidation protein	identified by similarity to SP:P25522; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	tRNA modification GTPase mnmE	thiophene and furan oxidation protein	tRNA modification GTPase mnmE	tRNA modification GTPase trmE	TRNA modification GTPase, TrmE	tRNA modification GTPase mnmE	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650 tRNA modification GTPase TrmE	
RICPR00713	Uncharacterized protein RP760	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	tRNA modification GTPase TrmE	Putative uncharacterized protein	
RICPR00714	Protein recA	recA protein	Protein recA	Residues 6 to 358 of 358 are 100 pct identical to residues 1 to 353 of a 353 aa protein from Escherichia coli O157:H7 ref: NP_311583.1 RecA protein	Protein recA	Protein recA	Protein recA	recA protein	Protein recA	Protein recA	RecA protein	conserved gene RecA bacterial DNA recombination protein	RecA protein	Protein recA	Protein recA	RecA	recombination protein RecA	identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012 RecA	Protein recA	recombination protein A	Protein recA	Protein recA	identified by similarity to SP:P42440; match to protein family HMM PF00154 RecA	Protein recA	Protein recA	InterProMatches:IPR001553; involved in DNA repair and homologous recombination,Molecular Function: damaged DNA binding (GO:0003684), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Molecular Function: DNA-dependent ATPase activity (GO:0008 multifunctional SOS repair regulator	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark RecA	RecA recombinase A recombination protein	Protein recA, chromosomal	
RICPR00715	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-[acyl-carrier-protein] reductase	FabG protein	Probable 3-oxoacyl-[acyl-carrier-protein] reductase oxidoreductase	3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase)	conserved gene 3-oxoacyl-(acyl carrier protein) reductase	3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl carrier protein reductase)	3-oxoacyl-[acyl-carrier protein] reductase	Short-chain dehydrogenase/reductase family enzyme	FabG1	3-oxoacyl-(Acyl-carrier-protein) reductase	3-oxoacyl-[acyl-carrier-protein] reductase	Mb1519, fabG1, len: 247 aa. Equivalent to Rv1483, len: 247 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 247 aa overlap). Probable fabG1 (alternate gene name: mabA), 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), equivalent to O07399|FABG_MYCAV 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE from Mycobacterium avium (255 aa); P71534|FABG_MYCSM 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE from Mycobacterium smegmatis (255 aa); and NP_302228.1|NC_002677 3-oxoacyl-[ACP] reductase (aka MabA) from Mycobacterium leprae (253 aa). Also highly similar to many e.g. T36779 probable 3-oxacyl-(acyl-carrier-protein) reductase from Streptomyces coelicolor (234 aa); FABG_ECOLI|P25716|NP_415611.1|NC_000913 3-oxoacyl-[acyl-carrier-protein] reductase from Escherichia coli strain K12 (244 aa), FASTA scores: opt: 664, E(): 6.8e-35, (44.4% identity in 241 aa overlap); etc. Contains PS00061 Short-chain dehydrogenases/reductases family signature. BELONGS TO THE SHORT-CHAIN DEHYDROGENASES/REDUCTASES (SDR) FAMILY. PROBABLE 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE FABG1 (3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE)	InterProMatches:IPR002198; Biological Process: metabolism (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491) beta-ketoacyl-acyl carrier protein reductase	3-oxoacyl-[acyl-carrier-protein] reductase	3-oxoacyl-[acyl-carrier protein] reductase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-oxoacyl-reductase	3-oxoacyl-[acyl carrier protein] reductase	similar to Salmonella typhi CT18 3-oxoacyl-[acyl-carrier protein] reductase 3-oxoacyl-[acyl-carrier protein] reductase	similar to BR0458, 3-oxoacyl-(acyl-carrier-protein) reductase FabG, 3-oxoacyl-(acyl-carrier-protein) reductase	Putative uncharacterized protein gbs0335	3-oxoacyl- reductase (acyl-carrier protein)	identified by match to PFAM protein family HMM PF00106 3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-[acyl-carrier protein] reductase	Ortholog of S. aureus MRSA252 (BX571856) SAR1207 3-oxoacyl-[acyl-carrier protein] reductase	3-oxoacyl-reductase, acyl-carrier protein	Putative beta-ketoacyl-ACP reductase	3-oxoacyl-[acyl-carrier protein] reductase	
RICPR00716	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Residues 1 to 78 of 78 are 100 pct identical to residues 1 to 78 of a 78 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287228.1 acyl carrier protein	Acyl carrier protein	Acyl carrier protein (ACP):Phosphopantetheine attachment site	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein 1	Acyl carrier protein (ACP)	conserved gene acyl carrier protein	Acyl carrier protein (ACP)	identified by similarity to EGAD:37837; match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	hypothetical protein	identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	Acyl carrier protein	identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 acyl carrier protein	AcpM	Meromycolate extension acyl carrier protein	Mb2268, acpM, len: 115 aa. Equivalent to Rv2244, len: 115 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 115 aa overlap). acpM, acyl carrier protein, meromycolate precursor transport, involved in meromycolate extension (see citations below). Highly similar to others e.g. L43074|STMFABD2|STMFABD|g870805 acyl carrier protein from Streptomyces glaucescens (82 aa), FASTA scores: opt: 298, E(): 8.4e-13, (56.6% identity in 76 aa overlap); and ACP_ECOLI|P02901 acyl carrier protein from Escherichia coli, FASTA score: (37.3% identity in 67 aa overlap); etc. MEROMYCOLATE EXTENSION ACYL CARRIER PROTEIN ACPM	InterProMatches:IPR003231; Molecular Function: acyl carrier activity (GO:0000036), Biological Process: fatty acid biosynthesis (GO:0006633) acyl carrier protein	acyl carrier protein ACP	Acyl carrier protein	Acyl COG0236 Acyl carrier protein carrier protein ACP	Acyl carrier protein	IPR001092: Basic helix-loop-helix dimerization domain bHLH; IPR003231: Acyl carrier protein (ACP); IPR006162: Phosphopantetheine attachment site;IPR006163: Phosphopantetheine-binding domain Acyl carrier protein (ACP)	
RICPR00717	3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE II	3-oxoacyl-[acyl-carrier-protein ] synthase II	Residues 1 to 413 of 413 are 99 pct identical to residues 1 to 413 of a 413 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287229.1 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	Beta-ketoacyl synthase	3-oxoacyl-[acyl-carrier-protein] synthase 2	Probable 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II)	conserved gene beta-ketoacyl-acyl carrier protein synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II)	3-oxoacyl-[acyl-carrier protein] synthase II	identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl-carrier-protein) synthase II	3-oxoacyl-[acyl-carrier-protein] synthase I/II	3-oxoacyl-[acyl-carrier-protein] synthase II	beta-ketoacyl-ACP synthase II	3-oxoacyl-[ACP] synthase II	3-oxoacyl-[acyl-carrier-protein] synthase II	identified by similarity to GP:6118425; match to protein family HMM PF00109; match to protein family HMM PF02801 3-oxoacyl-(acyl-carrier-protein) synthase II	3-oxoacyl-(Acyl-carrier protein) synthase II protein	InterProMatches:IPR000794, IPR000719; Molecular Function: catalytic activity (GO:0003824), Biological Process: fatty acid biosynthesis (GO:0006633), Molecular Function: protein kinase activity (GO:0004672), Molecular Function: ATP binding (GO:0005524), Biological Process: protein amino acid ph beta-ketoacyl-acyl carrier protein synthase II	3-oxoacyl-[acyl-carrier-protein] synthase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 3-oxoacyl-synthase II	3-oxoacyl-[acyl carrier protein] synthase II	3-oxoacyl-acyl carrier protein synthase II	IPR000794: Beta-ketoacyl synthase 3-oxoacyl-[acyl-carrier-protein] synthase II	3-oxoacyl-(acyl-carrier-protein) synthase	similar to Salmonella typhi CT18 3-oxoacyl-[acyl-carrier-protein] synthase II 3-oxoacyl-[acyl-carrier-protein] synthase II	Similar to Synechocystis sp.  3-oxoacyl-[acyl-carrier-protein] synthase II FabF or SLL1069 SWALL:FABF_SYNY3 (SWALL:P73283) (416 aa) fasta scores: E(): 7.3e-76, 49.39% id in 415 aa, and to a long series of eukaryotic entries, e.g. Perilla frutescens beta-ketoacyl-ACP synthase I Kas I SWALL:O48942 (EMBL:AF026148) (474 aa) fasta scores: E(): 3.4e-93, 56.97% id in 416 aa 3-oxoacyl-[acyl-carrier-protein] synthase II	
RICPR00718	Guanylate kinase	Guanylate kinase	Residues 20 to 226 of 226 are 100 pct identical to residues 1 to 207 of a 207 aa protein from Escherichia coli K12 ref: NP_418105.1 guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	conserved gene guanylate kinase	guanylate kinase	Guanylate kinase	identified by match to protein family HMM PF00625 guanylate kinase	Guanylate kinase	Guanylate kinase	guanylate kinase	identified by similarity to SP:P24234; match to protein family HMM PF00625 guanylate kinase	Guanylate kinase	guanylate kinase	Guanylate kinase	Guanylate kinase	Guanylate kinase	identified by match to protein family HMM PF00625 guanylate kinase, putative	Guanylate kinase	Guanylate kinase (GMP kinase) protein	
RICPR00719	Uncharacterized HTH-type transcriptional regulator RP766	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00720	ROD SHAPE-DETERMINING PROTEIN MREC	identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219 rod shape-determining protein MreC	Rod shape-determining protein MreC	identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219 rod shape-determining protein MreC	Cell shape determining protein MreC	Rod shape-determining protein	putative rod shape-determining MreC transmembrane protein	identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219 rod shape-determining protein MreC	rod shape-determining protein MreC	Rod shape-determining protein mreC	Rod shape-determining protein MreC, subtype	Rod shape-determining protein MreC	identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219 cell shape-determining protein MreC	Citation: Wachi, M. et al. (1989), J.  Bacteriology,171:6511-6516. Rod shape-determining protein, MreC	rod shape-determining protein MreC, putative	Rod shape-determining protein MreC	rod shape-determining protein MreC, putative	rod shape-determining protein MreC TIGRFAM: rod shape-determining protein MreC: (4.3e-21) PFAM: Rod shape-determining protein MreC: (2e-28) KEGG: sil:SPO0419 rod shape-determining protein MreC, ev=1e-134, 83% identity	rod shape-determining protein MreC identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219	Cell shape determining protein MreC	cell shape-determining protein	rod shape-determining protein MreC	rod shape-determining protein MreC identified by similarity to SP:Q01466; match to protein family HMM PF04085; match to protein family HMM TIGR00219	Rod shape-determining protein MreC precursor	putative rod shape-determining protein	rod shape-determining protein MreC TIGRFAM: rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC KEGG: pol:Bpro_0223 rod shape-determining protein MreC	rod shape-determining protein MreC TIGRFAM: rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC KEGG: rsp:RSP_2328 rod shape-determining protein, MreC	rod shape-determining protein MreC TIGRFAM: rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC KEGG: hch:HCH_05333 rod shape-determining protein MreC	rod shape-determining protein	
RICPR00721	ROD SHAPE-DETERMINING PROTEIN MREB	MreB	Residues 6 to 372 of 372 are 99 pct identical to residues 1 to 367 of a 367 aa protein from Escherichia coli O157:H7 ref: NP_312150.1 regulator of ftsI	Rod Shape Protein-Sugar Kinase	Rod shape-determining protein MreB	Heat shock protein hsp70:Cell shape determining protein MreB/Mrl	MreB protein	Probable rod shape-determining protein	Rod shape-determining protein MreB	Rod shape-determining protein MreB	conserved gene rod shape determining protein MreB	Rod shape-determining protein MreB	Cell shape determining protein MreB	rod shape-determining protein MreB	identified by similarity to SP:P13519; match to protein family HMM PF06723; match to protein family HMM TIGR00904 rod shape-determining protein MreB	Rod shape-determining protein mreB	Rod shape-determining protein	Actin-like ATPase	identified by match to protein family HMM TIGR00904 cell shape-determining protein MreB	InterProMatches:IPR004753 cell-shape determining protein	rod shape-determining protein MreB	Rod shape-determining protein MreB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark rod shape-determining protein	MreB rod shape-determining protein	Rod shape-determining protein MreB	IPR001023: Heat shock protein Hsp70; IPR004753: Cell shape determining protein MreB/Mrl Rod shape-determining protein mreB	Actin-like ATPase involved in cell morphogenesis, MreB	similar to Salmonella typhi CT18 rod shape-determining protein rod shape-determining protein	Similar to Bacillus subtilis rod shape-determining protein MreB SWALL:MREB_BACSU (SWALL:Q01465) (337 aa) fasta scores: E(): 1.4e-64, 55.06% id in 336 aa, and to Escherichia coli, Escherichia coli O6, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 1e-63, 57.73% id in 336 aa putative rod shape-determining protein	
RICPR00722	Putative uncharacterized protein RP769	Putative membrane protein	YjgQ protein	Similar to putative membrane protein YjgQ of Escherichia coli	Putative membrane protein hypothetical protein	Putative membrane protein hypothetical protein	identified by match to protein family HMM PF03739 permease, YjgP/YjgQ family	Permease protein	putative permease	similar to Salmonella typhi CT18 putative inner membrane protein putative inner membrane protein	similar to BR0686, conserved hypothetical protein conserved hypothetical protein	Hypothetical transmembrane protein	Putative membrane protein, permease	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	Similar to: HI1703, YJGQ_HAEIN predicted permease	Predicted permeases Hypothetical protein	Predicted permease	Putative permease	Hypothetical transmembrane protein	identified by similarity to SP:P39341; match to protein family HMM PF03739 putative permease	conserved hypothetical protein	Predicted permease YjgP/YjgQ family protein	ortholog to Escherichia coli bnum: b4262; MultiFun: Cell structure 6.1 putative transmembrane protein, transport	permease YjgP/YjgQ	permease YjgP/YjgQ	Predicted permeases	permease YjgP/YjgQ	Code: R; COG: COG0795 conserved hypothetical protein	Predicted permease YjgP/YjgQ family	
RICPR00723	PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN	Peptidoglycan-associated lipoprotein Pal	Pal protein	Peptidoglycan-associated lipoprotein	identified by similarity to SP:P07176; match to protein family HMM PF00691 peptidoglycan-associated lipoprotein	identified by similarity to SP:P07176; match to protein family HMM PF00691 peptidoglycan-associated lipoprotein Omp18	Peptidoglycan-associated lipoprotein	Membrane-associated protein map18	similar to BR1695, lipoprotein, Pal family lipoprotein, Pal family	Peptidoglycan-associated lipoprotein	Peptidoglycan-associated lipoprotein Pal, OmpA family of porins	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type pm : putative membrane component putative lipoprotein precursor	COG2885 peptidoglycan-associated protein	OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein; Similar to: HI0381, PAL_HAEIN outer membrane protein P6 precursor	Peptidoglycan-associated lipoprotein	18K peptidoglycan-associated outer membrane lipoprotein	OmpA family	required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; ortholog to Escherichia coli bnum: b0741; MultiFun: Cell structure 6.1 Pal	OmpA/MotB	Peptidoglycan-associated lipoprotein precursor	OmpA/MotB	OmpA/MotB domain	MotY protein:Bacterial outer membrane protein:OmpA/MotB domain	OmpA/MotB	peptidoglycan-associated lipoprotein	OmpA/MotB	Peptidoglycan-associated lipoprotein precursor	putative OmpA family peptidoglycan-associated lipoprotein precursor similarity:fasta; with=UniProt:PAL_ECOLI (EMBL:ECTOLAB); Shigella flexneri.; pal; Peptidoglycan-associated lipoprotein precursor.; length=173; id 42.683; 164 aa overlap; query 20-171; subject 10-172 similarity:fasta; with=UniProt:OMP16_RHIME (EMBL:SME591791); Rhizobium meliloti (Sinorhizobium meliloti).; omp16; Outer membrane lipoprotein omp16 homolog precursor.; length=176; id 82.486; 177 aa overlap; query 1-176; subject 1-175	OmpA/MotB precursor	
RICPR00724	3-oxoacyl-[acyl-carrier-protein] synthase 3	Type III beta-ketoacyl synthase-like protein	Residues 1 to 317 of 317 are 99 pct identical to residues 1 to 317 of a 317 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287225.1 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III	conserved gene 3-oxoacyl-(acyl carrier protein) synthase II FabH	3-oxoacyl-[acyl-carrier-protein] synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2	identified by match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase III	identified by similarity to SP:P24249; match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III protein 1	identified by similarity to SP:P24249; match to protein family HMM TIGR00747 3-oxoacyl-(acyl-carrier-protein) synthase III	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-(Acyl-carrier-protein) synthase III protein	3-oxoacyl-[acyl-carrier-protein] synthase 3	Mb0547c, fabH, len: 335 aa. Equivalent to Rv0533c, len: 335 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 335 aa overlap). fabH (alternate gene name: mtFabH), 3-oxoacyl-[acyl-carrier protein] synthase III (EC 2.3.1.41) (see citations below), highly similar to others e.g. Q54206|FABH from STREPTOMYCES GLAUCESCENS (333 aa), FASTA scores: opt: 1109, E(): 0, (51.4% identity in 333 aa overlap); FABH_ECOLI|P24249 3-oxoacyl-[acyl-carrier-protein] synthase III (317 aa), FASTA scores: opt: 666, E(): 0, (37.1% identity in 318 aa overlap); etc. BELONGS TO THE FABH FAMILY. Note that previously known as fabH. 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE III FABH (BETA-KETOACYL-ACP SYNTHASE III) (KAS III)	3-oxoacyl-[acyl-carrier-protein] synthase	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase 3	3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase	3-oxoacyl-[acyl-carrier-protein] synthase III	
RICPR00725	50S ribosomal protein L32	50S ribosomal protein L32	Residues 1 to 57 of 57 are 100 pct identical to residues 1 to 57 of a 57 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_287223.1 50S ribosomal subunit protein L32	50S ribosomal protein L32	50S ribosomal subunit protein L32	conserved gene 50S ribosomal protein L32	50S ribosomal subunit protein L32	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	50S ribosomal protein L32	Ribosomal protein L32	hypothetical protein	Ribosomal protein L32	similar to Salmonella typhi CT18 50S ribosomal protein L32 50S ribosomal protein L32	similar to BR1775, ribosomal protein L32 RpmF, ribosomal protein L32	50S ribosomal protein L32	50S ribosomal protein L32	50S ribosomal protein L32	Similar to ERGA_CDS_05940 50S ribosomal protein L32	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031 ribosomal protein L32	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 50S ribosomal protein L32	COG0333 RpmF ribosomal protein L32; go_component: 0005840 large subunit ribosomal protein L32	50S ribosomal protein L32	LSU ribosomal protein L32P	Similar to: HI0158, RL32_HAEIN 50S ribosomal protein L32	Ribosomal protein L32 RpmF protein	50S ribosomal protein L32	Ribosomal protein L32	50S ribosomal protein L32	
RICPR00726	Putative uncharacterized protein RP774	unknown	tmRNA-binding protein	SmpA/OmlA	Lipoprotein	Putative outer membrane lipoprotein	Putative uncharacterized protein	TmRNA-binding protein	TmRNA-binding protein	Putative uncharacterized protein	SmpA/OmlA domain protein precursor	lipoprotein (SmpA/OmlA family)	Putative uncharacterized protein	Lipoprotein SmpA/OmlA family	Putative uncharacterized protein olmA	SmpA	SmpA/OmlA family lipoprotein	Lipoprotein SmpA/OmlA	TmRNA-binding protein	
RICPR00727	Cell division protein ftsY homolog	Cell division protein ftsY	Cell Division Protein FtsY	Signal recognition particle GTPase, FtsY protein	signal recognition particle GTPase	Signal recognition particle	FtsY protein	FtsY	cell division protein	Putative cell division protein	Cell division protein	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	conserved gene cell division membrane protein FtsY	Similar to C-terminal part of signal recognition particle GTPase, FtsY hypothetical protein	identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; match to protein family HMM TIGR00961 cell division protein FtsY	SRP family of GTP-binding proteins-cell division protein	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 signal recognition particle-docking protein FtsY	Cell division protein FtsY	signal recognition particle receptor (docking protein)	Cell division protein	Signal recognition particle	Cell division protein FtsY	Signal recognition particle GTPase, FtsY	identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM TIGR00064 signal recognition particle-docking protein FtsY	FtsY	Cell division protein ftsY homolog	Mb2945c, ftsY, len: 422 aa. Equivalent to Rv2921c, len: 422 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 422 aa overlap). Probable ftsY, membrane-associated cell division protein, equivalent to O33010|FTSY_MYCLE CELL DIVISION PROTEIN FTSY HOMOLOG from Mycobacterium leprae (430 aa), FASTA scores: opt: 1760, E(): 1.1e-108, (81.35% identity in 429 aa overlap). Also similar to others e.g. Q9I6C1|FTSY|PA0373 SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY from Pseudomonas aeruginosa (455 aa), FASTA scores: opt: 882, E(): 5.1e-40, (42.08% identity in 385 aa overlap); Q9KVJ6|FTSY CELL DIVISION PROTEIN from Vibrio cholerae (391 aa), FASTA scores: opt: 837, E(): 1.2e-37, (36.3% identity in 394 aa overlap); P10121|FTSY_ECOLI|FTSY|B3464 CELL DIVISION PROTEIN from Escherichia coli strain K12 (497 aa), FASTA scores: opt: 800, E(): 1.3e-35, (39.75% identity in 327 aa overlap); etc. Also similar to Q9ZBP9|SC7A1.24 PUTATIVE PROKARYOTIC DOCKING PROTEIN from Streptomyces coelicolor (412 aa), FASTA scores: opt: 1461, E(): 4.3e-71, (60.3% identity in 423 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop), and PS00300 SRP54-type proteins GTP-binding domain signature. BELONGS TO THE SRP FAMILY OF GTP-BINDING PROTEINS. PROBABLE CELL DIVISION PROTEIN FTSY	InterProMatches:IPR004390; involved in secretion of extracellular proteins and localization of spore-forming proteins,Molecular Function: GTP binding (GO:0005525) signal recognition particle (docking protein)	signal recognition particle-docking protein FtsY signal recognition particle GTPase	
RICPR00728	DNA polymerase I	DNA polymerase I	DNA polymerase I	Residues 1 to 928 of 928 are 99 pct identical to residues 1 to 928 of a 928 aa protein from Escherichia coli K12 ref: NP_418300.1 DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease	DNA Polymerase I	DNA polymerase I	PolA; DNA polymerase I protein	DNA polymerase I	Probable dna polymeraseIprotein	DNA polymerase I	DNA polymerase I	conserved gene DNA polymerase I	DNA polymerase I	DNA polymerase I	identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase I	DNA polymerase I	DNA polymerase I	identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase I	DNA-directed DNA polymerase I	DNA-directed DNA polymerase I	DNA polymerase I	DNA polymerase I	DNA POLYMERASE I	DNA polymerase I 3'-5' exonuclease and polymerase domains	identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593 DNA polymerase type I	PolA	DNA-directed DNA polymerase	DNA polymerase I	Mb1655, polA, len: 904 aa. Equivalent to Rv1629, len: 904 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 904 aa overlap). polA, DNA polymerase I (EC 2.7.7.7). Has DNA polymerase family A signature (PS00447) at C-terminal end. FASTA best: DPO1_MYCTU|Q07700 DNA polymerase I from Mycobacterium tuberculosis (904 aa).  Some similarity to Rv2090|MTCY49.30 (393 aa), E(): 2.2e-18, (38.7% identity in 292 aa overlap). BELONGS TO DNA POLYMERASE TYPE-A FAMILY. DNA polymerase I polA	


RICPR00729	DNA polymerase III subunit alpha	DNA polymerase III alpha subunit	DNA polymerase III alpha subunit	Residues 1 to 1160 of 1160 are 99 pct identical to residues 1 to 1160 of a 1160 aa protein from Escherichia coli K12 ref: NP_414726.1 DNA polymerase III, alpha subunit	DNA polymerase III subunit alpha	DNA polymerase III, alpha chain	DnaE1; DNA polymerase III (Alpha chain) protein	DNA polymerase III subunit alpha	DnaE protein	DnaE	DNA polymerase III alpha chain 2	Probable dna polymerase III (Alpha chain) protein	DNA polymerase III alpha subunit	DNA polymerase III, alpha chain	conserved gene DNA polymerase III, alpha subunit	DNA polymerase III, alpha chain	DNA-directed DNA polymerase III, alpha chain	DNA polymerase III subunit alpha	DNA polymerase III alpha subunit	Contains: Ssp dnaE intein DNA polymerase III alpha subunit	identified by similarity to SP:P10443 DNA polymerase III, alpha subunit	DNA-directed DNA polymerase III, alpha subunit	DNA polymeraDNA polymerase III alphase III alpha subunit	DNA polymerase III subunit alpha	DNA polymerase III alpha chain	DNA polymerase III alpha subunit	identified by similarity to SP:P10443; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594; match to protein family HMM TIGR01612 DNA polymerase III, alpha subunit	DnaE1	DNA polymerase III alpha subunit protein	
RICPR00730	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose dehydrogenase	UDP-glucose dehydrogenase	UDP-glucose dehydrogenase	PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA	Mb0330, udgA, len: 443 aa. Equivalent to Rv0322, len: 443 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 443 aa overlap). Probable udg (alternate gene name: rkpK), UDP-glucose 6-dehydrogenase (EC 1.1.1.22), highly similar to others e.g.  CAC44517.1|AL596138 putative UDP-glucose 6-dehydrogenase from Streptomyces coelicolor (447 aa); Q56812 UDP-GLUCOSE DEHYDROGENASE from Xanthomonas campestris (445 aa), FASTA scores: opt: 713, E(): 0, (41.9% identity in 351 aa overlap); etc. Also similar to several GDP-mannose 6-dehydrogenase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). BELONGS TO THE UDP-GLUCOSE/GDP-MANNOSE DEHYDROGENASES FAMILY. PROBABLE UDP-GLUCOSE 6-DEHYDROGENASE UDGA (UDP-GLC DEHYDROGENASE) (UDP-GLCDH) (UDPGDH)	UDP-glucose 6-dehydrogenase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark UDP-glucose dehydrogenase	similar to BRA0545, UDP-glucose 6-dehydrogenase Ugd, UDP-glucose 6-dehydrogenase	UDP-glucose dehydrogenase	Putative nucleotide sugar dehydrogenase	best blastp match gb|AAK33536.1| (AE006511) putative nucleotide sugar dehydrogenase [Streptococcus pyogenes M1 GAS] putative nucleotide sugar dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose dehydrogenase	COG1004 UDP-glucose 6-dehydrogenase	UDP-glucose dehydrogenase	UDPglucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase (EC 1.1.1.22) 1	Flavin-containing monooxygenase FMO:UDP-glucose/GDP-mannose dehydrogenase:TrkA potassium uptake protein	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	UDP-glucose 6-dehydrogenase	
RICPR00731	Putative uncharacterized protein RP780	Hypothetical transmembrane protein	unknown	conserved hypothetical protein	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00732	Putative transporter ampG 3	Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: integral to membrane (GO:0016021) Major facilitator superfamily	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark signal transducer	Permeases of the major facilitator superfamily ProP protein	signal transducer	AmpG protein	Major facilitator superfamily MFS_1	major facilitator superfamily MFS_1	AmpG	peptide-acetyl-coenzyme A transporter family protein	Major facilitator superfamily MFS_1	signal transducer identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	AmpG protein	major facilitator family transporter identified by match to protein family HMM PF07690	Hypothetical protein	AmpG protein	AmpG	AmpG	AmpG protein	AmpG	AmpG protein	Peptide-acetyl-coenzyme A transporter family protein	Putative beta-lactamase induction signal transducer AmpG	Peptide-acetyl-coenzyme A transporter (PAT) family protein precursor	Major facilitator superfamily MFS_1	AmpG-related permease	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Signal transducer	
RICPR00733	Sec-independent protein translocase protein tatC homolog	Sec-independent protein translocase component	Putative uncharacterized protein	Similar to Sec-independent protein translocase TatC hypothetical protein	conserved gene sec-independent (periplasmic) protein translocase protein TatC	Similar to Sec-independent protein translocase TatC hypothetical protein	ycf43 sec-independent protein translocase protein TatC	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 twin-arginine translocation protein TatC	Sec-independent protein translocase protein tatC	Sec-independent protein secretion pathway component TatC	identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 Sec-independent protein translocase TatC	Putative uncharacterized protein	SEC-independent protein translocase protein	Sec-independent protein translocase protein tatC homolog	Mb2120c, tatC, len: 308 aa. Equivalent to Rv2093c, len: 308 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 308 aa overlap). Probable tatC, transmembrane protein, component of twin-arginine translocation protein export system (see citation below for more information), equivalent to U00017|U00017_1 from Mycobacterium leprae (317 aa), FASTA scores: opt: 1722, E(): 0, (84.5% identity in 310 aa overlap). Similarity to others e.g. P27857|TATC_ECOLI|MTTB|B3839|Z5360|ECS4768 Sec-independent protein translocase protein from E. coli strain K12 and O157:H7 (258 aa), FASTA scores: opt: 344, E(): 6e-16, (32.5% identity in 265 aa overlap). BELONGS TO THE TATC FAMILY. Probable Sec-independent protein translocase transmembrane protein tatC	InterProMatches:IPR008277 component of the twin-arginine pre-protein translocation pathway	sec-independent protein translocase protein TatC	Sec-independent protein translocase protein TatC	Sec-independent protein secretion pathway component, TatC	Sec-independent protein secretion pathway component TatC	similar to BR0884, Sec-independent protein translocase protein TatC TatC, Sec-independent protein translocase protein TatC	Sec-independent protein translocase component	conserved hypothetical protein	Sec-independent protein translocase protein tatC homolog	Ortholog of S. aureus MRSA252 (BX571856) SAR0343 putative Sec-independent protein translocase protein	conserved hypothetical protein	protein secretion component, Tat family	Similar to sp|Q9ZCG6|TATC_RICPR sp|P44560|TATC_HAEIN sp|P27857|TATC_ECOLI sp|P54085|TATC_AZOCH; Ortholog to ERGA_CDS_04840 SEC-independent protein translocase protein TatC	COG0805 TatC Sec-independent protein secretion pathway component TatC Sec-independent protein translocase protein	
RICPR00734	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Residues 1 to 430 of 430 are 100 pct identical to residues 1 to 430 of a 430 aa protein from Escherichia coli O157:H7 ref: NP_309005.1 serine tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase hypothetical protein	conserved gene seryl tRNA synthetase	Seryl-tRNA synthetase hypothetical protein	Seryl-tRNA synthetase 2	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	identified by similarity to SP:P09156; match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 seryl-tRNA synthetase	Seryl-tRNA synthetase	seryl-tRNA synthetase	Seryl-tRNA synthetase	Seryl-tRNA synthetase	Serine-tRNA ligase	Seryl-tRNA synthetase	
RICPR00735	VIRB4 PROTEIN	Similar to rp||virB4 rc||virB4 rp||virB4; Ortholog to ERGA_CDS_08350 VirB4 protein	COG3451 VirB4 type IV secretory pathway, VirB4 components other copies include: AM814 VirB4 protein	Similar to rp||virB4 rc||virB4 rp||virB4; Ortholog to ERWE_CDS_08440 VirB4 protein	Type IV secretion/conjugal transfer ATPase, VirB4 family	CagE, TrbE, VirB family component of typeIV transporter system	VirB4	ATPase/DNA transfer protein	type IV secretion system protein VirB4 identified by similarity to GB:AAM00400.1; match to protein family HMM PF03135	VirB4 identified by match to protein family HMM PF03135	VirB4 protein	VirB4 protein	VirB4	VirB4	Type IV secretion/conjugal transfer ATPase, VirB4 family protein	VirB4 ATPase	Type IV secretion/conjugal transfer ATPase, VirB4 family protein	DNA transfer protein	Type IV secretion system protein VirB4	Type IV secretion system protein VirB4 precursor	Type IV secretion system protein VirB4, putative	VirB4b ATPase	ComB4 competence protein	
RICPR00736	Uncharacterized protein RP785	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00737	Uncharacterized membrane protein RP786	Inner membrane protein alx	TerC family protein	TerC family protein	Cellular Component: integral to membrane (GO:0016021) Integral membrane protein TerC family	tellurium resistance protein TerC	Uncharacterized membrane protein bbp_156	tellurium resistance protein	Membrane protein TerC, possibly involved in tellurium resistance	probable integral membrane protein, TerC family	membrane protein, TerC family	putative transporter membrane protein	Tellurium resistance protein TerC	membrane protein, TerC family	Integral membrane protein TerC	Membrane protein TerC	Integral membrane protein TerC	putative pH-regulated membrane protein	conserved hypothetical protein	Integral membrane protein TerC	Integral membrane protein TerC	Integral membrane protein TerC	conserved hypothetical protein	Tellurium resistance protein TerC	putative TerC family transporter similarity:fasta; with=UniProt:ALX_ECOLI (EMBL:U00096); Escherichia coli.; alx; Alx protein.; length=321; id 43.077; 325 aa overlap; query 11-325; subject 4-318 similarity:fasta; with=UniProt:Q8UE99_AGRT5 (EMBL:C97584); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Transporter (AGR_C_3415p).; length=327; id 62.812; 320 aa overlap; query 3-321; subject 1-320	Integral membrane protein TerC	Integral membrane protein TerC PFAM: Integral membrane protein TerC KEGG: gvi:glr4409 putative transmembrane transport protein	Integral membrane protein TerC	Integral membrane protein TerC	

RICPR00739	Uncharacterized protein RP788	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	heat resistant agglutinin	Putative uncharacterized protein	
RICPR00740	Uncharacterized protein RP789	unknown	conserved hypothetical protein	Putative methyltransferase	Hypothetical protein	Putative uncharacterized protein	Putative methyltransferase	Putative methyltransferase	Putative uncharacterized protein	Methyltransferase type 12	methyltransferase	Seryl-tRNA synthetase	Methyltransferase type 12 PFAM: Methyltransferase type 11; Methyltransferase type 12 KEGG: rrs:RoseRS_1668 methyltransferase type 12	Methyltransferase type 12	Methyltransferase type 12	Putative uncharacterized protein	
RICPR00741	NADH-quinone oxidoreductase subunit J	NADH dehydrogenase I J subunit	Probable transmembrane nadh dehydrogenaseI(Chain j) oxidoreductase protein	NADH-quinone oxidoreductase chain J	conserved gene NADH dehydrogenase I, J subunit	NADH-quinone oxidoreductase chain J	identified by similarity to SP:P50975; match to protein family HMM PF00499 NADH dehydrogenase I, J subunit	NADH-ubiquinone oxidoreductase, NQO10 subunit	NuoJ	NADH-ubiquinone oxidoreductase chain J protein	NADH dehydrogenase I, J subunit	Mb3178, nuoJ, len: 262 aa. Equivalent to Rv3154, len: 262 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 262 aa overlap). Probable nuoJ, transmembrane NADH dehydrogenase I, chain J (EC 1.6.5.3), similar to others e.g. Q9XAR3|NUOJ from Streptomyces coelicolor (285 aa), FASTA scores: opt: 991, E(): 3.2e-52, (63.7% identity in 243 aa overlap); Q9JX90|NUOJ|NMA0006 from Neisseria meningitidis (serogroup A) (223 aa), FASTA scores: opt: 329, E(): 9.6e-13, (34.85% identity in 175 aa overlap); Q9K1B2|NMB0253 from Neisseria meningitidis (serogroup B) (223 aa), FASTA scores: opt: 326, E(): 1.5e-12, (34.85% identity in 175 aa overlap); etc. But also similarity with Q00243|NU6C_PLEBO|NDH6 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 6 HOMOLOG (EC 1.6.5.3) (CATALYTIC ACTIVITY: NADH + PLASTOQUINONE = NAD(+) + PLASTOQUINOL) from Plectonema boryanum (199 aa), FASTA scores: opt: 287, E(): 2.8e-10, (34.35% identity in 195 aa overlap). SIMILAR TO POLYPEPTIDE 6 OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIA. PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO10 subunit	NADH-quinone oxidoreductase subunit 10	NADH:ubiquinone oxidoreductase chain J	NADH-ubiquinone oxidoreductase NQO10 subunit	NADH dehydrogenase I, J subunit	NADH oxidoreductase I	NADH dehydrogenase I chain J	Similar to sp|Q9ZCG3|NUOJ_RICPR sp|P50975|NUOJ_RHOCA rc||nuoJ; Ortholog to ERGA_CDS_04920 NADH-quinone oxidoreductase chain J	COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) similar to NP_771548.1 NADH dehydrogenase chain J	Similar to Q9K1B2 NADH dehydrogenase I, J subunit from Neisseria meningitidis (223 aa). FASTA: opt: 387 Z-score: 452.6 E(): 2.6e-17 Smith-Waterman score: 387; 38.191 identity in 199 aa overlap NADH dehydrogenase I, J subunit	NADH-quinone oxidoreductase subunit J	NADH dehydrogenase I, chain J	NADH-ubiquinone oxidoreductase NQO10 subunit	NADH Dehydrogenase I Chain J	NADH dehydrogenase subunit J	NADH dehydrogenase I, subunit J (NADH-quinone oxidoreductase, chain J)	Similar to sp|Q9ZCG3|NUOJ_RICPR sp|P50975|NUOJ_RHOCA rc||nuoJ; Ortholog to ERWE_CDS_05020 NADH-quinone oxidoreductase chain J	
RICPR00742	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase chain K	conserved gene NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase chain K	NADH dehydrogenase subunit 4L	identified by similarity to SP:P50940; match to protein family HMM PF00420 NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NAD(P)H-quinone oxidoreductase chain 4L	identified by similarity to SP:P50940; match to protein family HMM PF00420 NADH-quinone oxidoreductase, K subunit	NADH-quinone oxidoreductase subunit K	NADH-ubiquinone oxidoreductase chain K protein	NADH-quinone oxidoreductase subunit K	Mb3179, nuoK, len: 99 aa. Equivalent to Rv3155, len: 99 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 99 aa overlap). Probable nuoK, integral membrane NADH dehydrogenase I, chain K (EC 1.6.5.3), similar to others e.g. Q9XAR4|NUOK from Streptomyces coelicolor (99 aa), FASTA scores: opt: 509, E(): 2.7e-31, (78.55% identity in 98 aa overlap); Q56226|NQOB_THETH|NQO11 from Thermus aquaticus (subsp.  thermophilus) (95 aa), BLAST scores: initn: 298, init1: 180, bits: 85.7, FASTA scores: opt: 313, E(): 9.4e-17, (53.7% identity in 95 aa overlap); Q9RU97|DR1495 from Deinococcus radiodurans (103 aa), FASTA scores: opt: 309, E(): 2e-16, (52.0% identity in 100 aa overlap); etc. But also similarity with NADH-PLASTOQUINONE OXIDOREDUCTASES CHAIN 4L e.g. Q9MUL4|NULC_MESVI|NDHE from Mesostigma viride (EC 1.6.5.3) (CATALYTIC ACTIVITY: NADH + PLASTOQUINONE = NAD(+) + PLASTOQUINOL) (101 aa), FASTA scores: opt: 280, E(): 2.8e-14, (40.6% identity in 101 aa overlap); and P06261|NULC_TOBAC|NDHE|NDH4L from Nicotiana tabacum (Common tobacco) (101 aa), FASTA scores: opt: 259, E(): 1e-12, (43.0% identity in 93 aa overlap). SIMILAR TO POLYPEPTIDE 4L OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIA. PROBABLE NADH DEHYDROGENASE I (CHAIN K) NUOK (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN K)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO11 subunit	NADH-quinone oxidoreductase subunit 11	NADH:ubiquinone oxidoreductase chain K	NADH-quinone oxidoreductase subunit K	similar to BR0812, NADH dehydrogenase I, K subunit NuoK, NADH dehydrogenase I, K subunit	NADH-quinone oxidoreductase subunit K	NADH-quinone oxidoreductase subunit K	NADH oxidoreductase I	NADH dehydrogenase I chain K	putative NADH Dehydrogenase subunit	Ortholog to ERGA_CDS_04910 NADH-quinone oxidoreductase chain K	
RICPR00743	NADH-quinone oxidoreductase subunit L	NADH dehydrogenase I L subunit	Residues 1 to 613 of 613 are 99 pct identical to residues 1 to 613 of a 613 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288852.1 NADH dehydrogenase I chain L	Probable nuoL; transmembrane NADH dehydrogenase I (Chain L) oxidoreductase protein	NADH-quinone oxidoreductase chain L	conserved gene NADH dehydrogenase I, L subunit	NADH-quinone oxidoreductase chain L	identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974 NADH dehydrogenase I, L subunit	NADH-ubiquinone oxidoreductase, chain L	NuoL	NADH-ubiquinone oxidoreductase chain L protein	NADH-quinone oxidoreductase subunit L	Mb3180, nuoL, len: 633 aa. Equivalent to Rv3156, len: 633 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8% identity in 633 aa overlap). Probable nuoL, integral membrane NADH dehydrogenase I, chain L (EC 1.6.5.3), similar to others e.g. Q9XAR5|NUOL_STRCO from Streptomyces coelicolor (654 aa), FASTA scores: opt: 2074, E(): 1.1e-111, (61.1% identity in 648 aa overlap); Q56227|NQOC_THETH|NQO12 from Thermus aquaticus (subsp.  thermophilus) (606 aa), FASTA scores: opt: 1420, E(): 3.8e-74, (43.35% identity in 630 aa overlap); Q9ZJV6|NUOL|JHP1192 from Helicobacter pylori J99 (Campylobacter pylori J99) (612 aa), FASTA scores: opt: 1279, E(): 4.7e-66, (41.65% identity in 516 aa overlap); etc. Also similar to MTCY251.04 (FASTA score: E(): 1.3e-11) and MTCY03A2.01c (FASTA score: E(): 2.3e-10).  SIMILAR TO POLYPEPTIDE 5 OF THE NADH-UBIQUINOL OXIDOREDUCTASE OF CHLOROPLASTS OR MITOCHONDRIAL. PROBABLE NADH DEHYDROGENASE I (CHAIN L) NUOL (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN L)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO12 subunit	NADH-quinone oxidoreductase subunit 12	IPR003916: NADH-ubiquinone oxidoreductase, chain 5; IPR003945: NADH-plastoquinone oxidoreductase, chain 5 NADH dehydrogenase I chain L	NADH:ubiquinone oxidoreductase chain L	similar to Salmonella typhi CT18 NADH dehydrogenase I chain L NADH dehydrogenase I chain L	Donor-ubiquinone reductase I	similar to BR0813, NADH dehydrogenase I, L subunit NuoL, NADH dehydrogenase I, L subunit	NADH-ubiquinone oxidoreductase NQO12 subunit	NADH dehydrogenase I, L subunit	NADH dehydrogenase I chain L	Similar to sp|Q92G97|NUOL_RICCN sp|Q9ZCG1|NUOL_RICPR; Ortholog to ERGA_CDS_04900 NADH-quinone oxidoreductase chain L	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme NADH dehydrogenase I chain L	COG1009 NuoL NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA similar to NP_697827.1 NADH dehydrogenase chain L	Similar to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain L BT4060 SWALL:AAO79165 (EMBL:AE016943) (643 aa) fasta scores: E(): 0, 87.55% id in 643 aa, and to Synechococcus elongatus NADH dehydrogenase subunit 5 NdhF1 or tll0720 SWALL:Q8DKX9 (EMBL:AP005371) (656 aa) fasta scores: E(): 3e-81, 42% id in 669 aa, and to Nephroselmis olivacea subunit 5 of NADH-plastoquinoneoxidoreductase NdhF SWALL:Q9TKV7 (EMBL:AF137379) (648 aa) fasta scores: E(): 2.9e-80, 41.13% id in 654 aa putative NADH dehydrogenase chain L	NADH-quinone oxidoreductase subunit L	
RICPR00744	NADH-quinone oxidoreductase subunit M	NADH dehydrogenase I M subunit	Possible nuoM; transmembrane NADH dehydrogenase I (Chain M) oxidoreductase protein	Probable transmembrane nadh dehydrogenaseI(Chain m) oxidoreductase protein	involved in photosystem-1 cyclic electron flow NADH dehydrogenase subunit 4	identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972 NADH dehydrogenase I, M subunit	NADH-ubiquinone oxidoreductase, NQO13 subunit	NAD(P)H-quinone oxidoreductase NdhD subunit	identified by similarity to SP:P50974; match to protein family HMM PF00361 NADH-quinone oxidoreductase, M subunit	NADH-ubiquinone oxidoreductase chain M protein	NADH-quinone oxidoreductase subunit 13	NADH:ubiquinone oxidoreductase chain M	Donor-ubiquinone reductase I	similar to BR0814, NADH dehydrogenase I, M subunit NuoM, NADH dehydrogenase I, M subunit	NADH dehydrogenase I, M subunit	NADH oxidoreductase I	NADH dehydrogenase chain M	Similar to sp|Q9ZCG0|NUOM_RICPR sp|Q92G96|NUOM_RICCN; Ortholog to ERGA_CDS_04890 NADH-quinone oxidoreductase chain M	COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) similar to NP_540063.1 NADH dehydrogenase chain M	Similar to Q83BR7 NADH dehydrogenase I, M subunit from Coxiella burnetii (506 aa). FASTA: opt: 1099 Z-score: 1147.9 E(): 4.8e-56 Smith-Waterman score: 1659; 47.228 identity in 523 aa overlap NADH dehydrogenase I, M subunit	NADH dehydrogenase I, chain M	NADH Dehydrogenase I Chain M	Similar to sp|Q9ZCG0|NUOM_RICPR sp|Q92G96|NUOM_RICCN; Ortholog to ERWE_CDS_04990 NADH-quinone oxidoreductase chain M	identified by match to protein family HMM TIGR01972 proton-translocating NADH-quinone oxidoreductase, M subunit	Proton-translocating NADH-quinone oxidoreductase, chain M	Proton-translocating NADH-quinone oxidoreductase, chain M	NADH dehydrogenase I chain M	Best Blastp Hit: pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase I, M subunit [Neisseria meningitidis MC58] COG1008 NADH-ubiquinone oxidoreductase subunit 4; NuoM putative NADH dehydrogenase I chain M	
RICPR00745	Cytochrome c biogenesis ATP-binding export protein ccmA	Residues 1 to 207 of 207 are 98 pct identical to residues 1 to 207 of a 207 aa protein CCMA_ECOLI sp: P33931 Heme exporter protein A (Cytochrome c-type biogenesis ATP-binding protein ccmA)	Cytochrome c biogenesis ATP-binding export protein ccmA	conserved gene heme exporter protein CcmA	identified by similarity to SP:P33931; match to protein family HMM PF00005; match to protein family HMM TIGR01189 heme exporter protein CcmA	Cytochrome c biogenesis ATP-binding export protein ccmA	Heme ABC exporter, ATP-binding protein CcmA	IPR001687: ATP/GTP-binding site motif A (P-loop); IPR003439: ABC transporter ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein	ABC-type transport system involved in cytochrome c biogenesis, ATPase component	similar to BR0094, heme exporter protein CcmA CcmA, heme exporter protein	Cytochrome c biogenesis ATP-binding export protein ccmA	Cytochrome c biogenesis ATP-binding export protein ccmA	Cytochrome c biogenesis ATP-binding export protein ccmA	Similar to sp|P33931|CCMA_ECOLI sp|P30963|CCMA_BRAJA sp|P45032|CCMA_HAEIN sp|P29959|CCMA_RHOCA; Ortholog to ERGA_CDS_07320 Heme exporter protein A	COG1131 CcmA ABC-type multidrug transport system, ATPase component heme exporter protein	Cytochrome c biogenesis ATP-binding export protein ccmA	involved in cytochrome c biogenesis; COG4133 ABC-type transport system ATPase component	heme exporter protein A	cytochrome c-type biogenesis ATP-binding protein CcmA; Similar to: HI1089, CCMA_HAEIN heme exporter protein A	ABC-type multidrug transport system, ATPase component CcmA protein	Cytochrome c biogenesis ATP-binding export protein ccmA	ABC-type transport system involved in cytochrome c biogenesis, ATPase component	heme ABC transporter ATP-binding protein	identified by similarity to SP:P33931; match to protein family HMM PF00005; match to protein family HMM TIGR01189 heme exporter protein CcmA	heme exporter protein A cytochrome c-type biogenesis ATP-binding protein	Hypothetical branched-chain amino acid transport ATP-binding protein livF	Similar to sp|P33931|CCMA_ECOLI sp|P30963|CCMA_BRAJA sp|P45032|CCMA_HAEIN sp|P29959|CCMA_RHOCA; Ortholog to ERWE_CDS_07400 Heme exporter protein A	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189 heme exporter protein CcmA	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01189 heme exporter protein CcmA	
RICPR00746	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase chain I	conserved gene NADH dehydrogenase I, I subunit	NADH-quinone oxidoreductase chain I	identified by similarity to SP:P42031; match to protein family HMM PF00037; match to protein family HMM TIGR01971 NADH dehydrogenase I, I subunit	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	NADH-ubiquinone oxidoreductase chain I protein	NADH-quinone oxidoreductase subunit I	Mb3177, nuoI, len: 211 aa. Equivalent to Rv3153, len: 211 aa, from Mycobacterium tuberculosis strain H37Rv, (99.5% identity in 211 aa overlap). Probable nuoI, NADH dehydrogenase I, chain I (EC 1.6.5.3), similar to others e.g. Q9XAR2|NUOI from Streptomyces coelicolor (211 aa), FASTA scores: opt: 825, E(): 9.3e-44, (70.1% identity in 164 aa overlap); Q56224|NQO9_THETH from Thermus aquaticus (subsp. thermophilus) (182 aa), FASTA scores: opt: 543, E(): 1.8e-26, (50.9% identity in 163 aa overlap); Q9RU95|DR1497 from Deinococcus radiodurans (178 aa), FASTA scores: opt: 527, E(): 1.7e-25, (48.75% identity in 162 aa overlap); etc. Contains two 4Fe-4S ferredoxins, iron-sulfur binding region signatures (PS00198). BELONGS TO THE COMPLEX I 23 KDA SUBUNIT FAMILY. THE IRON-SULFUR CENTERS ARE SIMILAR TO THOSE OF 'BACTERIAL-TYPE' 4FE-4S FERREDOXINS. COFACTOR: BINDS TWO 4FE-4S CLUSTERS. PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN I)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO9 subunit	NADH:ubiquinone oxidoreductase chain I	similar to BR0810, NADH dehydrogenase I, I subunit NuoI, NADH dehydrogenase I, I subunit	NADH-quinone oxidoreductase subunit I	NADH-quinone oxidoreductase subunit I	NADH dehydrogenase I chain I	Similar to sp|Q9ZCF8|NUOI_RICPR sp|Q92G94|NUOI_RICCN; Ortholog to ERGA_CDS_03790 NADH-quinone oxidoreductase chain I	NADH-quinone oxidoreductase	COG1143 NuoI formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) similar to NP_221145.1 NADH dehydrogenase	Similar to Pseudomonas fluorescens NADH dehydrogenase I subunit I NuoI SWALL:Q8RQ74 (EMBL:AF281148) (182 aa) fasta scores: E(): 3.3e-13, 36.42% id in 140 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain I BT4063 SWALL:AAO79168 (EMBL:AE016943) (162 aa) fasta scores: E(): 2.2e-55, 87.97% id in 158 aa, and to Pseudomonas syringae NADH dehydrogenase I, I subunit NuoI or PSPTO3372 SWALL:AAO56850 (EMBL:AE016868) (182 aa) fasta scores: E(): 1e-13, 37.14% id in 140 aa putative NADH dehydrogenase I subunit I	Similar to Q83BR3 (Q83BR3) NADH dehydrogenase I, I subunit from Coxiella burnetii (163 aa). FASTA: opt: 721 Z-score: 964.9 E(): 7.4e-46 Smith-Waterman score: 721; 62.577 identity in 163 aa overlap NADH dehydrogenase I, I subunit	ferredoxin-like iron-sulfur subunit of mitochondrial complex I	NADH dehydrogenase I , chain I	NADH-ubiquinone oxidoreductase NQO9 subunit	NADH Dehydrogenase I Chain I	
RICPR00747	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase chain H	conserved gene NADH dehydrogenase I, H subunit	NADH-quinone oxidoreductase chain H	identified by similarity to SP:P42032; match to protein family HMM PF00146 NADH dehydrogenase I, H subunit	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH-ubiquinone oxidoreductase chain H protein	NADH-quinone oxidoreductase subunit H	Mb3176, nuoH, len: 410 aa. Equivalent to Rv3152, len: 410 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 410 aa overlap). Probable nuoH, integral membrane NADH dehydrogenase I, chain H (EC 1.6.5.3), similar to others e.g. Q9XAR1 Q9XAR1|NUOH from Streptomyces coelicolor (467 aa), FASTA scores: opt: 1630, E(): 3.4e-90, (58.35% identity in 413 aa overlap); Q9RU94|DR1498 from Deinococcus radiodurans (397 aa), FASTA scores: opt: 1081, E(): 2e-57, (45.5% identity in 391 aa overlap); Q9ZCF7|NUOH_RICPR|RP796 from Rickettsia prowazekii (339 aa), FASTA scores: opt: 976, E(): 3.4e-51, (46.2% identity in 329 aa overlap); etc. Contains respiratory-chain NADH dehydrogenase subunit 1 signature 2 (PS00668). Some similarity to MTCY251.02 (FASTA score: E(): 1.2e-07). BELONGS TO THE COMPLEX I SUBUNIT 1 FAMILY. PROBABLE NADH DEHYDROGENASE I (CHAIN H) NUOH (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN H)	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark NADH-ubiquinone oxidoreductase NQO8 subunit	NADH:ubiquinone oxidoreductase chain H	NADH-quinone oxidoreductase subunit H	similar to BR0809, NADH dehydrogenase I, H subunit NuoH, NADH dehydrogenase I, H subunit	NADH-quinone oxidoreductase subunit H	NADH-quinone oxidoreductase subunit H	NADH oxidoreductase I	NADH dehydrogenase I chain H	Similar to sp|Q92G93|NUOH_RICCN sp|Q9ZCF7|NUOH_RICPR; Ortholog to ERGA_CDS_04410 NADH-quinone oxidoreductase chain H	NADH-plastoquinone oxidoreductase chain 1	COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) similar to EAA26066.1 NADH dehydrogenase chain H	Similar to Streptomyces coelicolor nuoh, NADH dehydrogenase subunit NuoH or sco4569 or scd16a.14C SWALL:Q9XAR1 (EMBL:AL939120) (467 aa) fasta scores: E(): 1.6e-46, 37.5% id in 336 aa, and to Bacteroides thetaiotaomicron NADH dehydrogenase I, chain H BT4064 SWALL:AAO79169 (EMBL:AE016943) (358 aa) fasta scores: E(): 2.2e-135, 88.26% id in 358 aa, and to Heliobacillus mobilis NADH-quinone oxidoreductase chain H SWALL:Q8GDW1 (EMBL:AY142861) (337 aa) fasta scores: E(): 3.6e-62, 46.08% id in 332 aa putative NADH dehydrogenase subunit H	Similar to Q83BR2 NADH dehydrogenase I, H subunit from Coxiella burnetii (340 aa). FASTA: opt: 1510 Z-score: 1695.3 E(): 1.5e-86 Smith-Waterman score: 1510; 60.843 identity in 332 aa overlap NADH dehydrogenase I, H subunit	NADH dehydrogenase I, chain H	
RICPR00748	NADH-quinone oxidoreductase subunit G	identified by similarity to SP:P29915; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM TIGR01973 NADH dehydrogenase I, G subunit	NADH-quinone oxidoreductase	NADH:ubiquinone oxidoreductase chain G	similar to BR0808, NADH dehydrogenase I, G subunit NuoG, NADH dehydrogenase I, G subunit	NADH-quinone oxidoreductase	Similar to sp|Q92G92|NUOG_RICCN sp|Q9ZCF6|NUOG_RICPR; Ortholog to ERGA_CDS_04400 NADH-quinone oxidoreductase chain G	COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) similar to NP_221147.1 NADH dehydrogenase chain G	NADH Dehydrogenase I Chain G	Similar to sp|Q92G92|NUOG_RICCN sp|Q9ZCF6|NUOG_RICPR; Ortholog to ERWE_CDS_04450 NADH-quinone oxidoreductase chain G	NADH dehydrogenase I chain G	NADH-quinone oxidoreductase, chain G	NADH-quinone oxidoreductase, chain G	Respiratory-chain NADH dehydrogenase 75 kDa subunit:Ferredoxin:Molybdopterin oxidoreductase	NADH + QUINONE = NAD(+) + QUINOL. COFACTOR: BINDS 1 4FE-4S CLUSTER AND 2 2FE-2S CLUSTERS PER SUBUNIT Citation: Xu,X., Matsuno-Yagi,A., Yagi,T., (1992) Arch. Biochem.  Biophys. 296:40-48 (1993) Biochemistry 32:968-981 NADH dehydrogenase-ubiquinone oxidoreductase, chain G	NADH-quinone oxidoreductase	NADH-quinone oxidoreductase, chain G	Fe(III) reductase, alpha subunit	NADH dehydrogenase I, G subunit identified by similarity to SP:P29915; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM TIGR01973	transcript_id=ENSOCUT00000012369	NADH-quinone oxidoreductase, chain G	NADH dehydrogenase I chain G	putative NADH-quinone oxidoreductase subunit G similarity:fasta; with=UniProt:NQO3_PARDE (EMBL:PDNADHD); Paracoccus denitrificans.; nqo3; NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH dehydrogenase I, chain 3) (NDH-1, chain 3).; length=672; id 56.642; 685 aa overlap; query 1-684; subject 3-660 similarity:fasta; with=UniProt:Q8UFX1_AGRT5 (EMBL:AE009089); Agrobacterium tumefaciens (strain C58/ATCC 33970).; nuoG; NADH ubiquinone oxidoreductase chain G.; length=693; id 83.838; 693 aa overlap; query 1-693; subject 1-693	NADH-quinone oxidoreductase, chain G	NADH-quinone oxidoreductase, chain G	NADH-quinone oxidoreductase, chain G TIGRFAM: NADH-quinone oxidoreductase, chain G: (2.4e-269) PFAM: ferredoxin: (2.1e-14) molybdopterin oxidoreductase: (1.2e-109) KEGG: sil:SPO2774 NADH dehydrogenase I, G subunit, ev=0.0, 85% identity	NADH-quinone oxidoreductase, chain G	NADH-quinone oxidoreductase, chain G identified by similarity to SP:P29915; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM TIGR01973	
RICPR00749	Putative uncharacterized protein RP798	Predicted membrane protein Hypothetical protein	unknown	membrane protein-like	membrane protein-like protein	Putative membrane protein	Hypothetical protein	Hypothetical protein	conserved hypothetical protein	conserved hypothetical protein KEGG: ade:Adeh_3030 hypothetical protein	Hypothetical protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein precursor	NADH dehydrogenase subunit G	Predicted membrane protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative membrane protein	Putative uncharacterized protein	
RICPR00750	Aconitate hydratase	Aconitate hydratase	Residues 1 to 891 of 891 are 99 pct identical to residues 1 to 891 of a 891 aa protein ACO1_ECOLI sp: P25516 aconitate hydratase 1 (citrate hydro-lyase 1) (aconitase 1)	Aconitate hydratase 1	Aconitate hydratase	Aconitate hydratase 1	Aconitate hydratase	conserved gene aconitate hydratase	Aconitate hydratase	identified by similarity to SP:P09339; match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341 aconitate hydratase	identified by similarity to SP:P25516; match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341 aconitate hydratase 1	aconitate hydratase	Aconitase	Aconitate hydratase	Acn	Aconitate hydratase 1	Aconitate hydratase	Mb1511c, acn, len: 943 aa. Equivalent to Rv1475c, len: 943 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 943 aa overlap). Probable acn, aconitate hydratase (EC 4.2.1.3), similar to many e.g.  P70920|ACON_BRAJA ACONITATE HYDRATASE from Bradyrhizobium japonicum (906 aa), FASTA scores: opt:1912, E(): 0, (54.8% identity in 958 aa overlap); closest to AF0021|AF002133_2 Mycobacterium avium strain GIR10 (961 aa), FASTA scores: opt: 5072, E(): 0, (82.8% identity in 943 aa overlap).  NOTE ACONITASE HAS AN ACTIVE (4FE-4S) AND AN INACTIVE (3FE-4S) FORMS. THE ACTIVE (4FE-4S) CLUSTER IS PART OF THE CATALYTIC SITE THAT INTERCONVERTS CITRATE, CIS-ACONITASE, AND ISOCITRATE. PROBABLE ACONITATE HYDRATASE ACN (Citrate hydro-lyase) (Aconitase)	InterProMatches:IPR006249, IPR001030; Molecular Function: RNA binding (GO:0003723), Molecular Function: aconitate hydratase activity (GO:0003994), Molecular Function: iron ion binding (GO:0005506), Biological Process: metabolism (GO:0008152), Molecular Function: lyase activity (GO:0016829) aconitate hydratase (aconitase)	aconitate hydratase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark aconitase	Aconitate hydratase	Aconitate hydratase	IPR001030: Aconitate hydratase, N-terminal aconitate hydratase 1	Aconitase A	similar to Salmonella typhi CT18 aconitate hydratase 1 (citrate hydro-lyase 1) aconitate hydratase 1 (citrate hydro-lyase 1)	similar to BR0093, aconitate hydratase 1 AcnA, aconitate hydratase 1	Aconitase	Aconitate hydratase	
RICPR00751	ATP synthase epsilon chain	ATP synthase epsilon chain	ATP synthase epsilon chain	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark ATP synthase epsilon chain	ATP synthase epsilon chain	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme membrane-bound ATP synthase , F1 sector, epsilon-subunit	F1-ATP synthase, epsilon subunit	ATP synthase epsilon chain	H+-transporting two-sector ATPase, delta/epsilon subunit	H+-transporting two-sector ATPase, delta/epsilon subunit	ATP synthase epsilon chain	H(+)-transporting two-sector ATPase (ATP synthase), epsilon subunit	ATP synthase epsilon chain	F-type H+-transporting ATP synthase, delta/epsilon subunit	ATP synthase F1, epsilon subunit	ATP synthase F1, epsilon subunit	ATP synthase epsilon chain	H+-transporting two-sector ATPase, delta/epsilon subunit	ATP synthase epsilon chain	ATP synthase epsilon chain 1	H+-transporting two-sector ATPase, delta/epsilon subunit	ATP synthase epsilon chain	ATP synthase F1, epsilon subunit	ATP synthase F1, epsilon subunit identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216	ATP synthase epsilon chain identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	ATP synthase F1, epsilon subunit	ATP synthase F1, epsilon subunit	ATP synthase F1, epsilon subunit	ATP synthase F1, epsilon subunit TIGRFAM: ATP synthase F1, epsilon subunit PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit KEGG: bur:Bcep18194_A3289 H+-transporting two-sector ATPase, delta/epsilon subunit	
RICPR00752	ATP synthase subunit beta	ATP synthase beta chain	ATP synthase subunit beta	Residues 1 to 460 of 460 are 100 pct identical to residues 1 to 460 of a 460 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290371.1 membrane-bound ATP synthase, F1 sector, beta-subunit	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase subunit beta	ATP synthase beta chain	ATP synthase subunit beta	ATP synthase subunit beta	Highly similar to H+-transporting ATP synthase beta chain hypothetical protein	conserved gene H+-transporting two-sector ATPase, ATP synthase F1 subunit beta	Highly similar to H+-transporting ATP synthase beta chain hypothetical protein	ATP synthase subunit beta	identified by similarity to EGAD:7360; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039 ATP synthase F1, beta subunit	ATP synthase subunit beta	ATP synthase beta chain	ATP synthase beta subunit	identified by similarity to SP:P05440; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039 ATP synthase F1, beta subunit	ATP synthase subunit beta	proton-translocating ATPase, beta subunit	ATP synthase subunit beta	ATP synthase beta chain	ATP synthase subunit beta	ATP synthase subunit beta	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039 ATP synthase F1, beta subunit	ATP synthase subunit beta	
RICPR00753	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	Residues 1 to 287 of 287 are 100 pct identical to residues 1 to 287 of a 287 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290372.1 membrane-bound ATP synthase, F1 sector, gamma-subunit	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	Highly similar to H+-transporting ATP synthase chain gamma hypothetical protein	conserved gene ATP synthase gamma chain, ATP synthase F1 gamma chain	Highly similar to H+-transporting ATP synthase chain gamma hypothetical protein	ATP synthase gamma chain	identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146 ATP synthase F1, gamma subunit	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase g subunit	identified by similarity to SP:P05436; match to protein family HMM PF00231; match to protein family HMM TIGR01146 ATP synthase F1, gamma subunit	ATP synthase gamma chain	proton-translocating ATPase, gamma subunit	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	ATP synthase gamma chain	identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146 ATP synthase F1, gamma subunit	ATP synthase gamma chain	
RICPR00754	ATP synthase subunit alpha	ATP synthase alpha chain	ATP synthase subunit alpha	Residues 1 to 513 of 513 are 100 pct identical to residues 1 to 513 of a 513 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290373.1 membrane-bound ATP synthase, F1 sector, alpha-subunit	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase alpha chain	ATP synthase subunit alpha	ATP synthase subunit alpha	Highly similar to H+-transporting ATP synthase chain alpha hypothetical protein	conserved gene F0F1-ATPase subunit alpha, ATP synthase alpha chain	Highly similar to H+-transporting ATP synthase chain alpha hypothetical protein	ATP synthase subunit alpha	ATP synthase alpha chain	ATP synthase A subunit	identified by similarity to SP:P05439; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962 ATP synthase F1, alpha subunit	ATP synthase subunit alpha	proton-translocating ATPase, alpha subunit	ATP synthase subunit alpha	ATP synthase subunit alpha	identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962 ATP synthase F1, alpha subunit	ATP synthase subunit alpha	ATP synthase subunit alpha	ATP synthase subunit alpha	Mb1340, atpA, len: 549 aa. Equivalent to Rv1308, len: 549 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 549 aa overlap). Probable atpA, ATP synthase alpha chain (EC 3.6.3.14), highly similar to ATPA_MYCLE|P45825 from Mycobacterium leprae (558 aa), FASTA scores: opt: 3233, E(): 0, (90.3% identity in 547 aa overlap). Contains PS00017 ATP/GTP-binding site motif A, PS00152 ATP synthase alpha and beta subunits signature.  SUBUNIT: F-TYPE ATPASES HAVE 2 COMPONENTS, CF(1) - THE CATALYTIC CORE - AND CF(0) - THE MEMBRANE PROTON CHANNEL.  CF(1) HAS FIVE SUBUNITS: ALPHA(3), BETA(3), GAMMA(1), DELTA(1), EPSILON(1). CF(0) HAS THREE MAIN SUBUNITS: A, B AND C. BELONGS TO THE ATPASE ALPHA/BETA CHAINS FAMILY. PROBABLE ATP SYNTHASE ALPHA CHAIN ATPA	InterProMatches:IPR005294; Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469), Molecular Function: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement ATP synthase (subunit alpha)	F0F1-type ATP synthase alpha chain	
RICPR00755	ATP synthase subunit delta	ATP synthase subunit delta	ATP synthase subunit delta	ATP synthase delta chain	Highly similar to H+-transporting ATP synthase chain delta hypothetical protein	conserved gene ATP synthase F1, delta subunit	Highly similar to H+-transporting ATP synthase chain delta hypothetical protein	ATP synthase d subunit	identified by similarity to SP:P05437; match to protein family HMM PF00213; match to protein family HMM TIGR01145 ATP synthase delta chain	ATP SYNTHASE DELTA CHAIN	ATP synthase	similar to BR1802, ATP synthase F1, delta subunit AtpH, ATP synthase F1, delta subunit	ATP synthase subunit delta	COG0712 AtpH F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein) ATP synthase delta chain	ATP synthase subunit delta	COG0712 ATP synthase delta subunit	ATP synthase subunit delta	Similar to ATPD_ECOLI (P00831) ATP synthase delta chain from E. coli (177 aa). FASTA: opt: 361 Z-score: 452.8 E(): 2.5e-17 Smith-Waterman score: 361; 31.073 identity in 177 aa overlap ATP synthase delta chain	ATP synthase delta chain	ATP synthase delta chain	H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain	ATP synthase F1, delta subunit	identified by similarity to SP:P00831; match to protein family HMM PF00213; match to protein family HMM TIGR01145 ATP synthase F1, delta subunit	H+-transporting two-sector ATPase, delta (OSCP) subunit	H+-transporting two-sector ATPase, delta (OSCP) subunit	ATP synthase delta chain	H+-transporting two-sector ATPase, delta (OSCP) subunit	H+-transporting two-sector ATPase, delta(OSCP) subunit	H+-transporting two-sector ATPase, delta (OSCP) subunit	
RICPR00756	Dihydrolipoyl dehydrogenase	Dihydrolipoyl dehydrogenase	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350 pyruvate dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative	Dihydrolipoyl dehydrogenase	Similar to rp||pdhD sp|P50970|DLDH_ZYMMO sp|P54533|DLD2_BACSU sp|P21880|DLD1_BACSU sp|P31023|DLDH_PEA sp|Q8KCW2|DLDH_CHLTE rp||pdhD rc||pdhD; Ortholog to ERGA_CDS_01340 Dihydrolipoamide dehydrogenase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes)	COG1249 Lpd dihydrolipoamide dehydrogenase/glutathione oxidoreductase similar to EAA26057.1 glutathione reductase	E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; COG1249 dihydrolipoyl dehydrogenase	Similar to rp||pdhD sp|P50970|DLDH_ZYMMO sp|P54533|DLD2_BACSU sp|P21880|DLD1_BACSU sp|P31023|DLDH_PEA sp|Q8KCW2|DLDH_CHLTE rp||pdhD rc||pdhD; Ortholog to ERWE_CDS_01380 Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350	dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Dihydrolipoamide dehydrogenase	Pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase	dihydrolipoamide dehydrogenase	pyruvate dehydrogenase complex, E3 component, lipoamidedehydrogenase, putative COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	Dihydrolipoamide dehydrogenase cytoplasmic protein	dihydrolipoamide dehydrogenase TIGRFAM: dihydrolipoamide dehydrogenase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region KEGG: plt:Plut_0784 dihydrolipoamide dehydrogenase	dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase)	Dihydrolipoamide dehydrogenase cytoplasmic protein	
RICPR00757	Putative uncharacterized protein RP806	DNA-binding stress protein	General stress protein 20U	Dna protection during starvation or oxydative stress protein	Weakly similar to DNA-binding ferritin-like protein (oxidative damage protectant) hypothetical protein	conserved gene DNA binding stress protein	Weakly similar to DNA-binding ferritin-like protein (oxidative damage protectant) hypothetical protein	identified by match to protein family HMM PF00210; match to protein family HMM PF02047 Dps family protein	probable DNA-binding stress protein	DNA-binding stress protein	Putative uncharacterized protein	General stress protein 20U	identified by match to protein family HMM PF00210 bacterioferritin, putative	general stress protein GSP20U general stress protein 20U Dps	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA-binding related protein	Starvation-inducible DNA-binding protein Dps	DNA-binding related protein	general stress protein 20U	Neutrophil-activating protein A	Ortholog of S. aureus MRSA252 (BX571856) SAR2227 putative non-heme iron-containing ferritin	general stress protein 20U	identified by similarity to GP:8272443; match to protein family HMM PF00210 peroxide resistance protein Dpr	DNA binding protein starved cells-like peroxide resistance protein	DNA-binding stress protein, putative	DNA-binding ferritin-like protein (oxidative damage protectant)	DNA-binding related protein	general stress protein 20U homolog	identified by match to protein family HMM PF00210 Dps family protein	identified by match to protein family HMM PF00210 Dps family protein	
RICPR00758	Penicillin-binding protein 1A	Residues 1 to 858 of 858 are 99 pct identical to residues 1 to 858 of a 858 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289935.1 peptidoglycan synthetase; penicillin-binding protein 1A	Penicillin-binding protein	mrcA penicillin binding protein 1A	Peptidoglycan glycosyltransferase	IPR001264: Glycosyl transferase, family 51; IPR001460: Penicillin-binding protein, transpeptidase domain transpeptidase of penicillin-binding protein 1a (peptidoglycan synthetase)	similar to Salmonella typhi CT18 penicillin-binding protein 1A penicillin-binding protein 1A	Penicillin-binding protein	Transpeptidase of penicillin-binding protein 1a	penicillin-binding protein 1A	penicillin-binding protein 1	Penicillin-binding protein 1A family	Penicillin-binding protein 1A	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 penicillin-binding protein, 1A family	COG5009 MrcA, Membrane carboxypeptidase/penicillin-binding protein . pfam00912 Transglycosylase. The penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively.  pfam00905. Citation: MEDLINE 85127060 (ortholog from E.  coli); 99058131 (Review) Penicillin-binding protein 1A (PBP-1a)	penicillin-binding protein 1A; Code: M; COG: COG5009 peptidoglycan synthetase	penicillin-binding protein 1A	Penicillin-binding protein 1A	Putative penicillin binding protein precursor	Penicillin-binding protein 1A	Penicillin-binding protein 1A	Membrane carboxypeptidase/penicillin-binding protein COG5009	penicillin-binding protein 1A; Code: M; COG: COG5009 peptidoglycan synthetase	Penicillin-binding protein 1A	Penicillin-binding protein, 1A family precursor	Penicillin-binding protein precursor	Penicillin-binding protein 1A	Penicillin-binding protein 1A	Penicillin-binding protein 1A	
RICPR00759	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	Residues 1 to 474 of 474 are 99 pct identical to residues 1 to 474 of a 474 aa protein from Escherichia coli O157:H7 ref: NP_308726.1 orf, conserved hypothetical protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	Similar to 2-methylthioadenine synthetase hypothetical protein	conserved gene tRNA thiotransferase	Similar to 2-methylthioadenine synthetase hypothetical protein	identified by similarity to OMNI:NTL01SA1175; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574 tRNA-i(6)A37 modification enzyme MiaB	hypothetical protein	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574 tRNA-i(6)A37 thiotransferase enzyme MiaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	Hypothetical protein SE0971	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574 tRNA-i(6)A37 thiotransferase enzyme MiaB	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	2-methylthioadenine synthetase (MiaB-like) protein	(Dimethylallyl)adenosine tRNA methylthiotransferase miaB	Mb2752c, -, len: 512 aa. Equivalent to Rv2733c, len: 512 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 512 aa overlap). Conserved hypothetical ala-, arg-rich protein. Similar to other hypothetical proteins from a range of organisms e.g.  Y195_MYCLE|Q49842 hypothetical 56.0 kd protein b2235_c2_195 from Mycobacterium leprae (516 aa), FASTA scores: opt: 2689, E(): 0, (80.4% identity in 509 aa overlap). CONSERVED HYPOTHETICAL ALANINE, ARGININE-RICH PROTEIN	conserved hypothetical protein	2-methylthioadenine synthetase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein TTHA1308	IPR002792: Deoxyribonuclease/rho motif-related TRAM; IPR005839: Protein of unknown function UPF0004; IPR006463: tRNA-i(6)A37 modification enzyme MiaB;IPR006638: Elongator protein 3/MiaB/NifB;IPR007197: Radical SAM methylthiolation of isopentenylated A37 derivatives in rRNA	2-methylthioadenine synthetase	
RICPR00760	Putative uncharacterized protein RP809	conserved hypothetical protein	similar to BR2176, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	COG3807 conserved hypothetical protein	Conserved hypothetical protein	unknown	Protein of unknown function DUF1058	Bacterial SH3-like region	hypothetical protein	Putative uncharacterized protein	protein of unknown function DUF1058	protein of unknown function DUF1058	unknown	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UJ60 (EMBL:A97368); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu0078.; length=200; id 73.889; 180 aa overlap; query 1-179; subject 24-200 Similar, but truncated at the N-terminus, to Agrobacterium tumefaciens (strain C58/ATCC 33970) Hypothetical protein Atu0078 (200 aa),	Protein of unknown function DUF1058	protein of unknown function DUF1058 PFAM: protein of unknown function DUF1058: (2.6e-16) KEGG: sil:SPO0631 hypothetical protein, ev=1e-58, 65% identity	protein of unknown function DUF1058	hypothetical conserved protein similar to SMc02848 [Sinorhizobium meliloti] and AGR_C_117p [Agrobacterium tumefaciens] Similar to swissprot:Q92T16 Putative location:bacterial periplasmic space Psort-Score: 0.9357	Protein of unknown function DUF1058	Hypothetical protein precursor	protein of unknown function DUF1058	Hypothetical protein	hypothetical protein COG3807 Uncharacterized protein conserved in bacteria	Uncharacterized protein	protein of unknown function DUF1058 PFAM: protein of unknown function DUF1058 KEGG: rsp:RSP_2312 hypothetical protein	conserved hypothetical protein	protein of unknown function DUF1058 PFAM: protein of unknown function DUF1058 KEGG: rpc:RPC_0353 protein of unknown function DUF1058	Hypothetical protein	
RICPR00761	GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN KEFB	Glutathione-regulated potassium-efflux system protein	Similar to rp||kefB sp|P03819|KEFC_ECOLI sp|P45522|KEFB_ECOLI; Ortholog to ERGA_CDS_00880 Glutathione-regulated potassium-efflux system protein kefB	conserved protein	COG0475 KefB Kef-type K+ transport systems membrane components similar to AAL24515.1 glutathione-regulated potassium-efflux system protein	Similar to Bacteroides thetaiotaomicron putative Na+/H+ exchanger BT0685 SWALL:AAO75792 (EMBL:AE016928) (490 aa) fasta scores: E(): 2.4e-165, 88.7% id in 487 aa, and to Escherichia coli putative Na(+)/H(+) exchanger YcgO or B1191 SWALL:YCGO_ECOLI (SWALL:P76007) (578 aa) fasta scores: E(): 5.1e-51, 38.83% id in 479 aa putative Na+/H+ exchanger	Kef-type K+ transport system, membrane component	Glutathione-regulated potassium-efflux system protein	identified by match to protein family HMM PF02080; match to protein family HMM PF02254 putative glutathione-regulated potassium-efflux system protein	Similar to rp||kefB sp|P03819|KEFC_ECOLI sp|P45522|KEFB_ECOLI; Ortholog to ERWE_CDS_00920 Glutathione-regulated potassium-efflux system protein kefB	identified by match to protein family HMM PF02080; match to protein family HMM PF02254 glutathione-regulated potassium-efflux system protein	TrkA-N:TrkA-C:Sodium/hydrogen exchanger	Potassium efflux system protein	Glutathione-regulated potassium-efflux system protein KefB	Potassium efflux system protein	Evidence 2b : Function of strongly homologous gene; PubMedId : 10632882, 10092637; Product type t : transporter putative Glutathione-regulated potassium-efflux system protein KefB	glutathione-regulated potassium-efflux system protein identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932	monovalent cation:H+ antiporter-2, CPA2 family	Sodium/hydrogen exchanger	Glutathione-regulated potassium-efflux system protein KefB	Kef-type K+ transport system, membrane components COG0475	Sodium/hydrogen exchanger	potassium efflux system protein identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254	glutathione-regulated potassium-efflux system protein identified by similarity to SP:P45522; match to protein family HMM PF00999; match to protein family HMM PF02254	Potassium efflux system protein	Potassium efflux system protein	Glutathione-regulated potassium-proton antiporter	K+ efflux antiporter, putative (KEA1)	Potassium efflux system protein	
RICPR00762	Putative uncharacterized protein RP811	hypothetical protein	Putative uncharacterized protein	Iojap superfamily ortholog	Putative uncharacterized protein	Putative uncharacterized protein	Similar to homolog of plant Iojap proteins	Similar to unknown protein YbeB of Escherichia coli	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	Putative uncharacterized protein lp_1532	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap-related protein	iojap protein family	hypothetical protein	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 iojap-related protein	Putative uncharacterized protein	conserved hypothetical protein	Hypothetical protein	Uncharacterized similar to plant Iojap protein	Putative uncharacterized protein	Iojap-related protein	conserved hypothetical protein	Putative uncharacterized protein ybeB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	hypothetical protein	Putative uncharacterized protein TTHA1777	Putative uncharacterized protein yccJ	putative ACR, homolog of plant Iojap protein	
RICPR00763	Uncharacterized protein RP812	identified by match to protein family HMM PF01722 BolA family protein	Stress-induced morphogen protein	similar to BR0836, bolA-related protein bolA-related protein	Putative uncharacterized protein	Similar to rc||RC1254; Ortholog to ERGA_CDS_07190 Conserved hypothetical protein	COG0271 stress-induced morphogen protein	Hypothetical protein	BolA-like protein	Similar to rc||RC1254; Ortholog to ERWE_CDS_07270 Conserved hypothetical protein	Stress-induced morphogen BolA protein homolog	BolA-like protein	BolA-like protein	BolA-like protein	ATP/GTP-binding site motif A (P-loop):BolA-like protein	Citation: Aldea M, Garrido T, Hernandez-Chico C, Vicente M, Kushner SR. EMBO J 1989;8:3923-3931. COG0271, BolA; Stress-induced morphogen (activity unknown).  pfam01722. BolA-like protein	BolA-like protein	BolA/YrbA family protein identified by match to protein family HMM PF01722	BolA family protein identified by match to protein family HMM PF01722	BolA-like protein	BolA/YrbA family protein identified by match to protein family HMM PF01722	BolA-like protein	BolA-like protein	BolA-like protein	BolA-like protein	BolA family protein identified by match to protein family HMM PF01722	probable stress-induced morphogen protein, BolA family similar to Atu1851 [Agrobacterium tumefaciens str.  C58] and SMc00489 [Sinorhizobium meliloti] Similar to swissprot:Q8UEA9 Putative location:bacterial cytoplasm Psort-Score: 0.2900; go_function: transcription regulator activity [goid 0030528]	BolA-like protein	BolA protein	
RICPR00764	Translation initiation factor IF-1	Translation initiation factor if-1	Translation initiation factor IF-1	Residues 1 to 72 of 72 are 100 pct identical to residues 1 to 72 of a 72 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286761.1 protein chain initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	translation initiation factor IF-1	Translation initiation factor IF-1 1	Translation initiation factor IF-1	Translation initiation factor IF-1	conserved gene translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00008 translation initiation factor IF-1	Translation initiation factor IF-1	translation initiation factor IF-1	translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	identified by similarity to SP:P20458; match to protein family HMM PF00575; match to protein family HMM TIGR00008 translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Translation initiation factor IF-1	Mb3491c, infA, len: 73 aa. Equivalent to Rv3462c, len: 73 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 73 aa overlap). Probable infA, initiation factor IF-1, equivalent to P45957|ML1962|INFA TRANSLATION INITIATION FACTOR IF-1 from Mycobacterium bovis (72 aa) and Mycobacterium leprae (72 aa), FASTA scores: opt: 472, E(): 6.6e-28, (100.0% identity in 72 aa overlap). Also highly similar to others e.g.  O54209|IF1_STRCO|INFA|SC6G4.03 from Streptomyces coelicolor (73 aa), FASTA scores: opt: 424, E(): 2e-24, (84.95% identity in 73 aa overlap); O50630|IF1_BACHD|INFA|BH0158 from Bacillus halodurans (71 aa), FASTA scores: opt: 388, E(): 8.1e-22, (77.8% identity in 72 aa overlap); Q9XD14|IF1_LEPIN|INFA from Leptospira interrogans (71 aa), FASTA scores: opt: 376, E(): 6e-21, (80.0% identity in 70 aa overlap); etc. CONTAINS 1 'S1 MOTIF' DOMAIN. BELONGS TO THE IF-1 FAMILY. PROBABLE TRANSLATION INITIATION FACTOR IF-1 INFA	InterProMatches:IPR004368; Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413) initiation factor IF-I	
RICPR00765	Maf-like protein RP815	Residues 1 to 197 of 197 are 97 pct identical to residues 21 to 217 of a 217 aa protein from Escherichia coli gb: AAA58051.1 orf, conserved hypothetical protein	Maf-like protein YPO3668/y0197/YP_3878	Maf-like protein NE0356	septum formation inhibitor Maf homolog	Maf-like protein plu4068	hypothetical protein	identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 maf protein	Maf-like protein CV_0124	Maf-like protein XF_1124	Maf-like protein Pro_1257	Maf-like protein MAP_3401	Septum formation protein	InterProMatches:IPR003697; septum formation Maf	septum formation protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Maf-like protein TTHA1188	IPR003697: Maf-like protein putative inhibitor of septum formation	Nucleotide-binding protein implicated in inhibition of septum formation	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Similar to many Maf and Maf-like proteins: Bacillus halodurans septum formation protein Maf or bh3033 SWALL:MAF_BACHD (SWALL:Q9K8H3) (190 aa) fasta scores: E(): 1.7e-19, 41.08% id in 185 aa and to Chlamydia trachomatis Maf-like protein Ct349 ct349 SWALL:Y349_CHLTR (SWALL:O84353) (196 aa) fasta scores: E(): 2.1e-41, 53.57% id in 196 aa conserved hypothetical protein	similar to BR0248, maf protein Maf-1, maf protein	Maf-like protein XAC2771	Maf-like protein BQ11190	Maf-like protein YPTB3562	Hypothetical protein	Maf-like protein	Similar to sp|Q989F1|YSE2_RHILO sp|Q9A5V5|YN42_CAUCR sp|Q92S22|Y615_RHIME sp|Q92G57|YC66_RICCN sp|Q9ZCE2|Y815_RICPR rc||maf rp||maf; Ortholog to ERGA_CDS_05250 Maf-like protein	
RICPR00766	DNAK SUPPRESSOR PROTEIN HOMOLOG	Putative dnak suppressor protein	identified by similarity to SP:P18274; match to protein family HMM PF01258 dnaK suppressor protein, putative	DnaK suppressor protein	DnaK supressor	RNA polymerase-binding protein DksA	DnaK suppressor protein	similar to BR1036, dnaK suppressor protein DksA, dnaK suppressor protein	DnaK supressor	DnaK suppressor protein	Putative DnaK suppressor protein	Similar to sp|O32347|DKSA_CAUCR rc||dksA rp||dksA; Ortholog to ERGA_CDS_00330 DNAK suppressor protein homolog	COG1734 DksA DnaK suppressor protein dnaK suppressor protein	COG1734 DnaK suppressor protein	DnaK supressor	DnaK suppressor protein	DnaK suppressor protein	Similar to sp|O32347|DKSA_CAUCR rc||dksA rp||dksA; Ortholog to ERWE_CDS_00340 DNAK suppressor protein homolog	identified by similarity to SP:P18274; similarity to GB:AAF85762.1; match to protein family HMM PF01258; match to protein family HMM TIGR02420 RNA polymerase-binding protein DksA, putative	DnaK suppressor protein homolog	Best Blastp Hit: gb|AAF40525.1| (AE002364) DnaK suppressor protein [Neisseria meningitidis MC58] COG1734 DnaK suppressor protein DskA putative dosage-dependent DnaK suppressor protein	DnaK suppressor protein DksA	dnaK suppressor protein	Zn-finger, prokaryotic DksA/TraR C4 type	DnaK suppressor protein	COG1734, DksA, DnaK suppressor protein (Signal transduction mechanisms). pfam01258, prokaryotic dksA/traR C4-type zinc finger. this gene and others in the pfam and COG do not contain the zinc finger but still have significant similarity. DnaK suppressor protein, DksA family	Transcriptional regulator, TraR/DksA family	transcriptional regulators, TraR/DksA family	DnaK suppressor protein identified by similarity to SP:P18274; match to protein family HMM PF01258	
RICPR00767	Tyrosine recombinase xerC	Tyrosine recombinase xerC	identified by similarity to SP:P21891; match to protein family HMM PF00589 site-specific recombinase, phage integrase family	Integrase	similar to BR1916, integrase/recombinase XerC XerC, integrase/recombinase	COG0582 XerC integrase similar to NP_698893.1; go_process: 0015074 integrase/recombinase ripx	Tyrosine recombinase XerC	Phage integrase:Phage integrase, N-terminal SAM-like	phage integrase	site-specific recombinase, phage integrase family identified by similarity to SP:P46352; match to protein family HMM PF00589; match to protein family HMM PF02899	predicted site-specific recombinase/integrase COG4974, pfam00589, cd00798	Tyrosine recombinase XerC	Phage integrase	phage integrase	phage integrase	Phage integrase	Phage integrase family protein	tyrosine recombinase XerC COG0582 Integrase	Integrase	site-specific recombinase, phage integrase family identified by match to protein family HMM PF00589	tyrosine recombinase XerC	site-specific recombinase, phage integrase family identified by match to protein family HMM PF00589	Phage integrase family protein	Phage integrase family protein	Tyrosine recombinase	Site-specific tyrosine recombinase	phage integrase PFAM: phage integrase phage integrase-like SAM-like KEGG: mlo:mlr4290 site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC)	Tyrosine recombinase	Integrase/recombinase	
RICPR00768	Putative uncharacterized protein RP818	Phasin family protein	Phasin family protein	
RICPR00769	Phospholipase D	Wg002 protein	Putative phospholipase d/transphosphatidylase; protein	Cardiolipin synthase family enzyme	putative endonuclease	Phospholipase D/Transphosphatidylase	Phospholipase D (PLD) superfamily protein	putative endonuclease protein	Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme	Phospholipase D superfamily protein PLD	putative endonuclease	endonuclease Nuc	hypothetical protein	endonuclease	Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases and related enzymes-like protein KEGG: bur:Bcep18194_A4723 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthase like enzyme	Phosphatidylserine/phosphatidylglycerophosphate, cardioli pin synthase and related enzyme	endonuclease identified by similarity to PIR:I79276	hypothetical protein	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme KEGG: bcn:Bcen_1105 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme	putative endonuclease Putative endonuclease,42% Identity to TrEMBL;Q8XWM2, 33% Identity to TrEMBL;Q8VMF9. Has Signal peptide. Has PLDc, Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.	endonuclease Nuc	putative endonuclease	putative endonuclease	Endonuclease Nuc	Endonuclease Nuc	phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme KEGG: pol:Bpro_4968 phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases like enzyme	Putative uncharacterized protein	Putative uncharacterized protein	Phospholipase D superfamily protein PLD	
RICPR00770	POLY-BETA-HYDROXYBUTYRATE POLYMERASE	similar to poly-beta-hydroxybutyrate synthase hypothetical protein	conserved gene poly-beta-hydroxybutyrate polymerase	similar to poly-beta-hydroxybutyrate synthase hypothetical protein	identified by match to protein family HMM PF07167; match to protein family HMM TIGR01838 poly(3-hydroxyalkanoate) polymerase	Poly-beta-hydroxybutyrate polymerase protein	Poly-beta-hydroxybutyrate polymerase	Poly(3-hydroxyalkanoate) synthetase	Poly(R)-hydroxyalkanoic acid synthase, class I	Poly(R)-hydroxyalkanoic acid synthase, class I	Poly(R)-hydroxyalkanoic acid synthase, class I	Poly(R)-hydroxyalkanoic acid synthase, class I TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I: (5.1e-292) PFAM: Poly-beta-hydroxybutyrate polymerase-like: (2.4e-108) KEGG: sil:SPO1292 poly(3-hydroxyalkanoate) polymerase, ev=0.0, 69% identity	Poly(R)-hydroxyalkanoic acid synthase, class I	Poly(R)-hydroxyalkanoic acid synthase, class I TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I PFAM: alpha/beta hydrolase fold Poly-beta-hydroxybutyrate polymerase-like KEGG: rru:Rru_A2413 poly(R)-hydroxyalkanoic acid synthase, class I	Poly(R)-hydroxyalkanoic acid synthase, class I	Poly(3-hydroxyalkanoate) polymerase	polyhydroxyalkanoic acid synthase	Poly(R)-hydroxyalkanoic acid synthase, class I	PHA/PHB synthase family protein	poly-3-hydroxybutyrate synthase COG3243 Poly(3-hydroxyalkanoate) synthetase	Poly(R)-hydroxyalkanoic acid synthase, class I	poly(R)-hydroxyalkanoic acid synthase, class I TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I	poly(R)-hydroxyalkanoic acid synthase, class I TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein KEGG: hch:HCH_02425 poly(3-hydroxyalkanoate) synthetase	poly(3-hydroxyalkanoate) polymerase, putative	Poly(R)-hydroxyalkanoic acid synthase, class I	probable poly-beta-hydroxybutyrate synthase Function:-Polymerizes d(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation. Entry name TREMBL:Q8KXD5 Prim.  accession # Q8KXD5 Identities = 354/607 (58%) InterPro IPR000073; A/b_hydrolase. IPR010941; PhaC_N. Pfam PF00561; Abhydrolase_1; 1. PF07167; PhaC_N; 1. Number of predicted TMHs: 0 High confidence in function and specificity	Poly(R)-hydroxyalkanoic acid synthase, class I	poly-beta-hydroxybutyrate polymerase Poly(3-hydroxybutyrate) polymerase; PHB polymerase; PHB synthase; Poly(3-hydroxyalkanoate) polymerase; identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838	poly(R)-hydroxyalkanoic acid synthase, class I TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I	
RICPR00771	Uncharacterized protein RP821	Residues 1 to 497 of 497 are 98 pct identical to residues 1 to 497 of a 497 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290473.1 putative oxidoreductase	Uncharacterized protein CT_085	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Highly similar to 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases hypothetical protein	conserved gene oxidoreductase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Highly similar to 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases hypothetical protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-polyprenyl-4-hydroxybenzoate decarboxylase elated enzyme	identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative	3-polyprenyl-4-hydroxybenzoate decarboxylase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD	putative oxidoreductase	3-polyprenyl-4-hydroxybenzoate decarboxylase, UbiD	similar to Salmonella typhi CT18 conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein yigC	Hypothetical protein JHP0985	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	Hypothetical protein	Protein of unknown function DUF117, putative carboxy-lyase	polyprenylp-hydroxybenzoate decarboxylase 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	conserved family - putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase hypothetical protein	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	
RICPR00772	Putative uncharacterized protein RP822	Peptidyl-prolyl cis-trans isomerase D	PpiC-type peptidyl-prolyl cis-trans isomerase	Probable peptidyl-prolyl cis-trans isomerase transmembrane protein	Peptidyl-prolyl cis-trans isomerase D	Probable peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark peptidyl-prolyl cis-trans isomerase	IPR000297: PpiC-type peptidyl-prolyl cis-trans isomerase peptidyl prolyl isomerase	Parvulin-like peptidyl-prolyl isomerase, PPID	similar to Salmonella typhi Ty2 peptidyl-prolyl cis-trans isomerase D peptidyl-prolyl cis-trans isomerase D	similar to BR1139, rotamase family protein rotamase family protein	Peptidyl-prolyl cis-trans isomerase	Peptidyl-prolyl cis-trans isomerase, for periplasmic folding of outer membrane proteins	Putative peptidyl-prolyl cis-trans isomerase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)	conserved family - putative peptidyl-prolyl cis-trans isomerase D hypothetical protein	Peptidyl-prolyl cis-trans isomerse D	COG0760 peptidyl-prolyl isomerase	peptidyl-prolyl cis-trans isomerase	PPIase D; rotamase D; Similar to: HI1004, PPID_HAEIN peptidyl-prolyl cis-trans isomerase D	Parvulin-like peptidyl-prolyl isomerase SurA protein	Peptidyl-prolyl cis-trans isomerase D, putative	Similar to PPID_BUCAP (Q8K987) Peptidyl-prolyl cis-trans isomerase from Buchnera aphidicola (subsp.  Schizaphis graminum) (621 aa). FASTA: opt: 298 Z-score: 309.1E(): 2.5e-09 Smith-Waterman score: 298; 23.362 identity in 351 aa overlap. 200 aa shorter (in C-term) than most of the homologs. ORF ftt0628 conserved hypothetical protein	Periplasmic parvulin-like peptidyl-prolyl isomerase	Putative peptidyl-prolyl cis-trans isomerase D	Peptidyl prolyl isomerase	PpiC-type peptidyl-prolyl cis-trans isomerase	peptidyl-prolyl cis-trans isomerase	

RICPR00773	DNA translocase ftsK	DNA translocase ftsK	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark cell division protein	DNA segregation ATPase FtsK	DNA translocase ftsK	DNA segregation ATPase FtsK	cell division FtsK transmembrane protein	cell division protein	identified by similarity to SP:P46889; match to protein family HMM PF01580 cell division protein FtsK, putative	identified by match to protein family HMM PF01580 cell division protein FtsK	Cell divisionFtsK/SpoIIIE	Cell divisionFtsK/SpoIIIE protein	Cell division protein FtsK-like protein	Best Blastp Hit: pir||A81096 cell division protein FtsK NMB1314 [imported] - Neisseria meningitidis (group B strain MD58) >gi|7226556|gb|AAF41689.1| (AE002480) cell division protein FtsK [Neisseria meningitidis MC58] COG1674 DNA segregation ATPase FtsK/SpoIIIE and putative ftsK-like cell division/stress response protein	ATP/GTP-binding site motif A (P-loop):Cell divisionFtsK/SpoIIIE protein:AAA ATPase	FtsK-like cell division protein	cell division transmembrane protein ftsK	DNA translocase FtsK identified by match to protein family HMM PF01580	Cell division FtsK/SpoIIIE	Cell divisionFtsK/SpoIIIE	Cell division FtsK/SpoIIIE	Cell division protein FtsK	DNA translocase FtsK	Cell divisionFtsK/SpoIIIE	cell division protein FtsK	Cell division protein FtsK	cell division protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	cell division protein FtsK	conserved hypothetical protein	
RICPR00774	Methionine aminopeptidase	Methionine aminopeptidase	Residues 1 to 264 of 264 are 100 pct identical to residues 1 to 264 of a 264 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_285862.1 methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	methionyl aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 methionine aminopeptidase, type I	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Mb2886c, mapB, len: 285 aa. Equivalent to Rv2861c, len: 285 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 285 aa overlap). Probable mapB (alternate gene name: map), methionine aminopeptidase (EC 3.4.11.18), equivalent to Q9CBU7|MAPB|ML1576 METHIONINE AMINOPEPTIDASE from Mycobacterium leprae (285 aa), FASTA scores: opt: 1729, E(): 1e-99, (89.75% identity in 283 aa overlap). Also highly similar to many e.g. Q9RKR2|MAP3 from Streptomyces coelicolor (285 aa), FASTA scores: opt: 1385, E(): 2e-78, (70.65% identity in 283 aa overlap); Q9SW64|C7A10.320|AT4G37040 from Arabidopsis thaliana (Mouse-ear cress) (305 aa), FASTA scores: opt: 914, E(): 3e-49, (50.35% identity in 286 aa overlap); P07906|AMPM_ECOLI|MAP|B0168|Z0178|ECS0170 from Escherichia coli strains K12 and O157:H7 (264 aa), FASTA scores: opt: 793, E(): 8.5e-42, (51.0% identity in 245 aa overlap); etc. BELONGS TO PEPTIDASE FAMILY M24A; ALSO KNOWN AS THE MAP FAMILY 1. COFACTOR: COBALT; BINDS 2 IONS PER SUBUNIT.  Note that this gene has an N-terminal extension present in the human map, but not in the prokaryotic map's. An alternative start, with RBS, will give a protein equivalent to the shorter prokaryotic map's. PROBABLE METHIONINE AMINOPEPTIDASE MAPB (MAP) (PEPTIDASE M)	Methionine aminopeptidase	IPR000994: Metallopeptidase M24; IPR001714: Methionine aminopeptidase; IPR002467: Methionine aminopeptidase, subfamily 1 methionine aminopeptidase	Methionine aminopeptidase	similar to Salmonella typhi CT18 methionine aminopeptidase methionine aminopeptidase	Similar to, but extended 40 amino acids at the N-terminus, Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri methionine aminopeptidase Map or b0168 or c0203 or z0178 or ecs0170 or sf0158 or s0161 SWALL:AMPM_ECOLI (SWALL:P07906) (264 aa) fasta scores: E(): 1.4e-37, 44.22% id in 251 aa, and to Chlamydophila caviae methionine aminopeptidase, type I map or cca00752 SWALL:Q822D1 (EMBL:AE016996) (291 aa) fasta scores: E(): 1.7e-111, 91.06% id in 291 aa, and to Chlamydia pneumoniae methionine aminopeptidase Map or cpn1009 or cp0844 SWALL:AMPM_CHLPN (SWALL:Q9Z6Q0) (291 aa) fasta scores: E(): 5.5e-98, 80.96% id in 289 aa putative methionine aminopeptidase	similar to BR1282, methionine aminopeptidase, type I Map, methionine aminopeptidase, type I	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Methionine aminopeptidase	Similar to sp|Q9ZCD3|AMPM_RICPR rc||map; Ortholog to ERGA_CDS_08550 Methionine aminopeptidase	

RICPR00775	UNDECAPRENYL-PHOSPHATE ALPHA-N- ACETYLGLUCOSAMINYLTRANSFERASE	conserved gene O-antigen initiating glycosyl transferase group 4-UDP-N-acetylmuramyl pentapeptide phosphotransferase/(N-acetylgalactosaminyl transferase TrsF)	Lipopolysaccharide core biosynthesis protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipopolysaccharide core biosynthesis protein	similar to BR0511, glycosyl transferase, group 4 family protein glycosyl transferase, group 4 family protein	Lipopolysaccharide core biosynthesis protein	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase	Glycosyl transferase, group 4 family protein	lipopolysaccharide core biosynthesis protein	Glycosyl transferase, family 4	Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase	glycosyl transferase, family 4	Glycosyl transferase, family 4	Glycosyl transferase, family 4	Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase COG0472	Glycosyl transferase, family 4 precursor	Glycosyl transferase, family 4	glycosyltransferase	glycosyl transferase, family 4	glycosyl transferase, group 4 family protein identified by match to protein family HMM PF00953	lipopolysaccharide core biosynthesis protein identified by sequence similarity; putative; ORF located using Blastx/Glimmer/GeneHacker	Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase	Sugar phosphotransferase inner membrane protein	Sugar phosphotransferase inner membrane protein	glycosyl transferase, family 4 PFAM: glycosyl transferase, family 4 KEGG: bcn:Bcen_0407 glycosyl transferase, family 4	membrane protein involved in cell envelope biogenesis Similar to proteins annotated as phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (UDP- MurNAc-pentapeptide phosphotransferase).  First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan (By similarity). Function unclear	Putative glycosyl transferase	
RICPR00776	Uncharacterized protein RP826	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00777	Putative uncharacterized protein RP827	Weak homology to Opacity protein and related surface antigens COG3637 unknown	unknown	OmpA family protein	Adhesin/virulence factor Hek	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Possible outer surface protein	Heat resistant agglutinin 1	Exported surface protein	Putative uncharacterized protein	
RICPR00778	Putative adhesin RP828	Putative outer surface protein	Putative uncharacterized protein	Putative outer surface protein	Putative outer surface protein	Putative outer surface protein	hypothetical protein	Putative outer surface protein	Putative uncharacterized protein	
RICPR00779	Ferredoxin	7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain	Probable ferredoxin protein	conserved gene ferredoxin II (4Fe-4S)	Similar to ferredoxin hypothetical protein	identified by match to protein family HMM PF00037 iron-sulfur cluster-binding protein	Ferredoxin	Ferredoxin III protein	ferredoxin	Ferredoxin	similar to BR1767, ferredoxin A FdxA, ferredoxin A	Similar to sp|P00214|FER1_AZOVI rc||fdxA; Ortholog to ERGA_CDS_00110 Ferredoxin	Ferredoxin, 4Fe-4S	Ferredoxin 1	Ferredoxin	ferredoxin	Similar to sp|P00214|FER1_AZOVI rc||fdxA; Ortholog to ERWE_CDS_00110 Ferredoxin	identified by similarity to SP:P00214; match to protein family HMM PF00037 ferredoxin	identified by similarity to SP:P00214; match to protein family HMM PF00037 ferredoxin	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	Ferredoxin	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding domain	7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	4Fe-4S ferredoxin, iron-sulfur binding	
RICPR00780	HEME EXPORTER PROTEIN C	Heme exporter protein C	Residues 9 to 253 of 253 are 100 pct identical to residues 1 to 245 of a 245 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288779.1 heme exporter protein C	Putative heme exporter protein C	ABC transporter, permease domain, ccmC, heme exporter	heme exporter protein CcmC	conserved gene heme exporter protein CcmC	heme exporter protein CcmC	identified by similarity to SP:P33929; match to protein family HMM PF01578; match to protein family HMM TIGR01191 heme exporter protein CcmC	Heme ABC transporter membrane protein	Heme ABC transporter	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark heme exporter protein C; cytochrome C-type biogenesis protein	Cytochrome c-type biogenesis protein, heme exporter protein	IPR002541: Cytochrome c assembly protein; IPR003557: Cytochrome c-type biogenesis protein CcmC ABC superfamily (membrane) heme exporter protein, cytochrome c-type biogenesis protein	ABC-type transport system involved in cytochrome c biogenesis, permease component	similar to Salmonella typhi Ty2 heme exporter protein C1 heme exporter protein C1	similar to BR0096, heme exporter protein CcmC CcmC, heme exporter protein	Heme exporter protein C	Putative ABC type heme exporter, permease subunit ccmC	Similar to sp|P45034|CCMC_HAEIN sp|P33929|CCMC_ECOLI sp|P52220|CCMC_PARDE rp||ccmC rc||ccmC; Ortholog to ERGA_CDS_07000 Heme exporter protein C	COG0755 CcmC ABC-type transport system involved in cytochrome c biogenesis, permease component heme exporter protein C	Heme exporter protein CcmC	involved in cytochrome c biogenesis; COG0755 ABC-type transport system heme exporter	heme chaperone heme-lyase	cytochrome c-type biogenesis protein CcmC; Similar to: HI1091, CCMC_HAEIN heme exporter protein C	ABC-type transport system involved in cytochrome c biogenesis, permease component CcmC protein	Heme ABC export system, permease protein CcmC	ABC-type transport system involved in cytochrome c biogenesis, permease component	ABC superfamily (Membrane) heme exporter protein	
RICPR00781	Uncharacterized deaminase RP831	Nitrogen fixation protein	Residues 1 to 178 of 178 are 100 pct identical to residues 1 to 178 of a 178 aa protein from Escherichia coli K12 ref: NP_417054.1 putative deaminase	Cytosine deaminase	Putative zinc-binding protein	Cytidine and deoxycytidylate deaminase zinc- binding region	Similar to cytosine deaminase	YfhC protein	Putative cytosine/adenosine deaminase protein	Similar to YfhC protein	similar to hypothetical proteins hypothetical protein	conserved gene deaminase	similar to hypothetical proteins hypothetical protein	Cytosine/adenosine deaminase	identified by match to protein family HMM PF00383 cytidine/deoxycytidylate deaminase family protein	tRNA-specific adenosine deaminase	putative cytidine and deoxycytidylate deaminase	identified by match to protein family HMM PF00383 cytidine and deoxycytidylate deaminase family protein	cytidine/deoxycytidylate deaminase family protein, putative	Putative uncharacterized protein	Cu binding protein (Mn oxidation	CYTOSINE DEAMINASE	Cytosine/adenosine deaminase	Putative uncharacterized protein	Cytosine deaminase protein	Cytidine and deoxycytidylate deaminase family protein	Mb3778c, -, len: 152 aa. Equivalent to Rv3752c, len: 152 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 152 aa overlap). Probable cytidine/deoxycytidylate deaminase (EC 3.5.4.-), equivalent to Q9CB32|ML2474 POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE from Mycobacterium leprae (171 aa), FASTA scores: opt: 890, E(): 1.6e-50, (88.1% identity in 151 aa overlap). Also highly similar to other deaminases and hypothetical proteins e.g.  Q9AK79|2SCD60.04c PUTATIVE DEAMINASE from Streptomyces coelicolor (143 aa), FASTA scores: opt: 559, E(): 2.9e-29, (66.45% identity in 146 aa overlap); Q9F9W7 CYTOSINE DEAMINASE from Bifidobacterium longum (143 aa) FASTA scores: opt: 512, E(): 3.1e-26, (54.85% identity in 144 aa overlap); P21335|YAAJ_BACSU HYPOTHETICAL 17.8 KDA PROTEIN from Bacillus subtilis (161 aa), FASTA scores: opt: 425, E(): 1.4e-20, (47.7% identity in 151 aa overlap); AAK74212|SP0020 CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN from Streptococcus pneumoniae (155 aa), FASTA scores: opt: 401, E(): 4.7e-19, (46.25% identity in 147 aa overlap); P30134|YFHC_ECOLI|B2559 HYPOTHETICAL 20.0 KDA PROTEIN from Escherichia coli strain K12 (178 aa), FASTA scores: opt: 397, E(): 9.5e-19, (47.0% identity in 149 aa overlap); etc. Contains PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.  BELONGS TO THE CYTIDINE AND DEOXYCYTIDYLATE DEAMINASES FAMILY. POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE	putative tRNA specific adenosine deaminase; Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787) putative Cytidine/deoxycytidylate deaminase, zinc-binding region YaaJ	cytosine/adenosine deaminase	
RICPR00782	Protein p34	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 cation efflux family protein	Cation efflux protein	Cation efflux system membrane protein	putative CDF family transport protein	similar to Salmonella typhi CT18 putative transmembrane efflux protein putative transmembrane efflux protein	Cation-efflux pump fieF	Cation efflux family protein	cobalt-zinc-cadmium resistance protein CzcD	Predicted Co/Zn/Cd cation transporters MMT1 protein	Cation efflux family protein	Cation transporter, CDF family	Cation-efflux pump fieF	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 cation efflux family protein	Putative transmembrane efflux protein	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 cation efflux family protein	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 cation efflux family protein	Cation efflux protein	Cation diffusion facilitator family transporter	Cation efflux protein	Cation efflux protein	Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; Product type t : transporter putative transport protein	Cation diffusion facilitator family transporter	cation transporter, cation diffusion facilitator (CDF) family identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297	Cation efflux protein	cation transporter, cation diffusion facilitator (CDF) family identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297	putative transport protein	cation diffusion facilitator family transporter	
RICPR00783	17 kDa surface antigen	conserved gene 17kDa common antigen	similar to surface antigens (17 kDa) hypothetical protein	17 kDa surface antigen precursor	LipA a lipoprotein	Rickettsia 17 kDa surface antigen	Putative uncharacterized protein	hypothetical protein	Rickettsia 17 kDa surface antigen	LipA a lipoprotein	17 kD surface antigen precursor	LipA a lipoprotein	LipA a lipoprotein	Surface antigen	17 kDa surface antigen PFAM: 17 kDa surface antigen KEGG: dps:DP0122 similar to 17 kDa surface antigen	Putative surface antigen	LipA a lipoprotein KEGG: rpc:RPC_1832 LipA a lipoprotein	17 kDa surface antigen PFAM: 17 kDa surface antigen KEGG: pca:Pcar_2748 17 kD surface antigen precursor	conserved hypothetical protein KEGG: mlo:mlr7687 hypothetical protein	17 kDa surface antigen precursor	Putative uncharacterized protein	Outer membrane lipoprotein-related protein precursor	17 kD surface antigen	17 kDa surface antigen	Putative outer-membranne lipoprotein precursor	17 kD surface antigen	17 kD surface antigen	17 kDa common-antigen	17 kDa surface antigen	
RICPR00784	Zinc import ATP-binding protein znuC	Zinc ABC transporter ATP-binding protein	High affinity Zn transport protein	Zinc ABC transporter ATP-binding protein	Zinc ABC transporter ATP-binding protein	Zinc ABC transporter ATP-binding protein	Zinc ABC transporter ATP-binding protein	high-affinity zinc uptake system ATP-binding protein	Methionine aminopeptidase	Putative uncharacterized protein	Zinc ABC transporter ATP-binding protein	Zinc ABC transporter ATP-binding protein	
RICPR00785	UvrABC system protein A	Excinuclease ABC subunit a	UvrABC system protein A	Residues 1 to 940 of 940 are 100 pct identical to residues 1 to 940 of a 940 aa protein from Escherichia coli K12 ref: NP_418482.1 excision nuclease subunit A	UvrABC system protein A	ABC transporter:Excinuclease ABC A subunit	UvrABC system protein A	UvrA	excinuclease ABC subunit A	Probable excinuclease abc subunit a (Dna repair atp-binding) abc transporter protein	Excinuclease ABC subunit A	excinuclease ABC subunit A	conserved gene excinuclease ABC A subunit	excinuclease ABC subunit A	UvrABC system protein A	identified by similarity to EGAD:107662; match to protein family HMM PF00005; match to protein family HMM TIGR00630 excinuclease ABC, A subunit	UvrABC system protein A	Excinuclease ABC subunit A	excinuclease ABC subunit A	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 UvrABC system protein A	Excinuclease ABC, subunit A	excinuclease ABC subunit A	UvrABC system protein A	UvrABC system protein A	Excinuclease ABC subunit A	Excinuclease ATPase subunit	identified by similarity to SP:O34863; match to protein family HMM PF00005; match to protein family HMM TIGR00630 excinuclease ABC, A subunit	UvrA	Excinuclease ABC, A subunit	
RICPR00786	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-strand binding protein (SSB) (Helix-destabilizing protein)	conserved gene single strand binding protein	Single-strand binding protein (SSB) (Helix-destabilizing protein)	Single-stranded DNA-binding protein	Single-strand DNA binding protein	identified by similarity to SP:P02339; match to protein family HMM PF00436; match to protein family HMM TIGR00621 single-strand binding protein	Single-stranded DNA-binding protein	phage-related protein single-strand DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein	Single-stranded DNA-binding protein, ssb	similar to BR1102, single-stranded DNA-binding protein family single-stranded DNA-binding protein family	Single-stranded DNA-binding protein	best blastp match gb|AAK04490.1|AE006276_5 (AE006276) single-strand binding protein [Lactococcus lactis subsp. lactis] putative single-strand binding protein	Similar to sp|Q9ZCC2|SSB_RICPR sp|P56898|SSB_RHIME sp|Q07432|SSB_BRUAB sp|Q8K933|SSB_BUCAP; Ortholog to ERGA_CDS_02840 Single-strand binding protein	identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM TIGR00621 single-strand binding protein	COG0629 Ssb single-stranded DNA-binding protein similar to NP_771338.1 single-strand binding protein	Also known as Competence induced loci A, CilA Single-stranded DNA-binding protein	single-strand DNA binding protein	Single-stranded DNA-binding protein Ssb protein	Similar to SSB_HAEIN P44409 Single-strand binding protein (SSB) from Haemophilus influenzae (168 aa). FASTA: opt: 437 Z-score: 543.8 E(): 1.9e-22 Smith-Waterman score: 437; 44.578identity in 166 aa overlap Single-strand binding protein	Single-stranded DNA-binding protein	Single-strand DNA binding protein	single-stranded DNA-binding protein	helix-destabilizing protein single-strand binding protein (ssb)	
RICPR00787	Putative uncharacterized protein RP837	conserved hypothetical transmembrane protein	conserved hypothetical protein	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases DAP2-like protein	DAP2 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein	Putative uncharacterized protein	conserved hypothetical protein KEGG: rso:RSc3165 hypothetical protein	conserved hypothetical protein; putative signal peptide Evidence 4 : Homologs of previously reported genes of unknown function	Hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	DAP2 dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein	DAP2 dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein	DAP2-like protein	Putative uncharacterized protein precursor	hypothetical protein	Single-strand DNA-binding protein	Putative uncharacterized protein	Putative lipoprotein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	DAP2 dipeptidyl aminopeptidase/acylaminoacyl- peptidase-like protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00788	UPF0235 protein RP839	unknown	Putative uncharacterized protein	UPF0235 protein A1G_07140	Putative uncharacterized protein	Putative uncharacterized protein	UPF0235 protein A1C_06510	hypothetical cytosolic protein	UPF0235 protein A1E_05380	Putative uncharacterized protein	Putative uncharacterized protein	UPF0235 protein RPR_04990	
RICPR00789	Chaperone protein htpG	Residues 1 to 624 of 624 are 99 pct identical to residues 1 to 624 of a 624 aa protein from Escherichia coli O157:H7 ref: NP_308553.1 chaperone Hsp90 HtpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Class III heat-shock protein HtpG(molecular chaperone)	conserved gene chaperone Hsp90 HtpG	Class III heat-shock protein HtpG(molecular chaperone)	Chaperone protein htpG	Chaperone protein htpG	identified by similarity to SP:P10413; match to protein family HMM PF00183; match to protein family HMM PF02518 heat shock protein HtpG	Chaperone protein htpG	Heat shock chaperone protein	Chaperone protein htpG	Mb2321c, htpG, len: 647 aa. Equivalent to Rv2299c, len: 647 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 647 aa overlap). htpG, probable chaperone, HSP90 familyHEAT SHOCK PROTEIN HSP90 FAMILY.  Similar to HTPG_BACSU|P46208 heat shock protein htpG homologue from Bacillus subtilis (626 aa), FASTA scores: opt: 1551, E(): 0, (39.6% identity in 631 aa overlap).  Contains possible helix-turn-helix motif at aa 519-540 (+3.77 SD). BELONGS TO THE HEAT SHOCK PROTEIN 90 FAMILY. PROBABLE CHAPERONE PROTEIN HTPG (HEAT SHOCK PROTEIN) (HSP90 FAMILY PROTEIN) (HIGH TEMPERATURE PROTEIN G)	InterProMatches:IPR001404; Molecular Function: chaperone activity (GO:0003754), Biological Process: protein folding (GO:0006457) class III heat-shock protein (molecular chaperone)	heat shock protein HtpG chaperone protein HtpG	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark heat shock protein G	IPR001404: Heat shock protein Hsp90 chaperone Hsp90, heat shock protein C 625	Molecular chaperone, HSP90 family, HtpG	similar to Salmonella typhi CT18 heat shock protein HtpG heat shock protein HtpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Chaperone protein htpG	Similar to sp|Q9ZCB9|HTPG_RICPR sp|P58478|HTPG_RICCN; Ortholog to ERGA_CDS_02450 Chaperone protein htpG (Heat shock protein htpG)	
RICPR00790	5-aminolevulinate synthase	8-amino-7-oxononanoate synthase protein	7-keto-8-aminopelargonate synthetase	similar to BR0319, 5-aminolevulinic acid synthase HemA, 5-aminolevulinic acid synthase	Similar to sp|Q9ZCB8|HEM1_RICPR sp|P08080|HEM1_RHIME; Ortholog to ERGA_CDS_00530 5-aminolevulinic acid synthase	COG0113 HemB delta-aminolevulinic acid dehydratase 5-c acid synthase (delta-aminolevulinate synthase)	5-aminolevulinic acid synthase hemA (GI:5051989) (Aspergillus oryzae); go_component: mitochondrial matrix [goid 0005759]; go_function: 5-aminolevulinate synthase activity [goid 0003870]; go_process: heme biosynthesis [goid 0006783] 5-aminolevulinic acid synthase	5-Aminolevulinic acid synthase	Similar to sp|Q9ZCB8|HEM1_RICPR sp|P08080|HEM1_RHIME; Ortholog to ERWE_CDS_00540 5-aminolevulinic acid synthase	5-aminolevulinic acid synthase	5-aminolevulinic acid synthase	5-aminolevulinic acid synthase	Aminotransferase, class-II:Aminolevulinic acid synthase:Aminotransferase, class I and II	5-aminolevulinate synthase	5-aminolevulinic acid synthase identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR01821	aminolevulinate, delta-, synthase 2 [Source:HGNC Symbol;Acc:397]	probable 5-aminolevulinic acid synthase	transcript_id=ENSOCUT00000013600	5-aminolevulinic acid synthase	transcript_id=ENSETET00000000987	5-aminolevulinic acid synthase KEGG: sil:SPO2596 5-aminolevulinic acid synthase, ev=0.0, 88% identity TIGRFAM: 5-aminolevulinic acid synthase: (0) PFAM: aminotransferase, class I and II: (6.9e-90) aminotransferase class-III: (0.04)	5-aminolevulinic acid synthase	5-aminolevulinic acid synthase identified by similarity to GB:BAA35068.1; match to protein family HMM PF00155; match to protein family HMM TIGR01821	5-aminolevulinic acid synthase	5-aminolevulinic acid synthase	5-aminolevulinic acid synthase identified by similarity to GB:BAA35068.1; match to protein family HMM PF00155; match to protein family HMM TIGR01821	5-aminolevulinic acid synthase	transcript_id=ENSFCAT00000000908	
RICPR00791	Trigger factor	Trigger factor	Trigger factor	Residues 1 to 432 of 432 are 100 pct identical to residues 1 to 432 of a 432 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286178.1 trigger factor; a molecular chaperone involved in cell division	Trigger factor	Trigger factor	Trigger factor	Trigger factor	Tig protein	Trigger factor	trigger factor (prolyl isomerase)	Trigger factor	Trigger factor	peptidyl-prolyl cis-trans isomerase (trigger factor)	conserved gene trigger factor TF (FKBP-type peptidyl prolyl cis-trans isomerase)	peptidyl-prolyl cis-trans isomerase (trigger factor)	Trigger factor	identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	Trigger factor	Trigger factor, ppiase	FKBP-type peptidyl-prolyl cis-trans isomerase trigger factor	identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	Trigger factor	trigger factor (prolyl isomerase)	Trigger factor	Trigger factor	Trigger factor	Trigger factor	identified by similarity to SP:P80698; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115 trigger factor	
RICPR00792	GTPase obg	GTP-binding protein	GTPase obg	Residues 1 to 390 of 390 are 99 pct identical to residues 1 to 390 of a 390 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289757.1 putative GTP-binding factor	GTPase obg	Putative GTP-binding protein	GTPase obg	GTPase obg	GTPase obg	Obg	GTP-binding protein	GTPase obg	GTPase obg	Similar to Legionella essential GTPase hypothetical protein	conserved gene GTP-binding protein, GTP1/Obg family	Similar to Legionella essential GTPase hypothetical protein	GTPase obg	identified by match to protein family HMM PF01018; match to protein family HMM TIGR00231 GTP-binding protein, GTP1/OBG family	GTPase obg	GTP-binding protein; probably involved in DNA repair CgtA	GTP-binding protein	identified by similarity to SP:P42641; match to protein family HMM PF01018; match to protein family HMM TIGR00231 GTP-binding protein, GTP1/OBG family	GTPase obg	GTP-binding protein, GTP1/Obg family	GTPase obg	Spo0B-associated GTP-binding protein	GTP-binding protein Obg	GTPase obg	identified by match to protein family HMM PF01018 GTP-binding protein, GTP1/Obg family	
RICPR00793	Citrate synthase	Citrate synthase	Residues 1 to 427 of 427 are 99 pct identical to residues 1 to 427 of a 427 aa protein from Escherichia coli K12 ref: NP_415248.1 citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	citrate synthase	conserved gene citrate synthase	citrate synthase	identified by similarity to SP:P00891; match to protein family HMM PF00285; match to protein family HMM TIGR01798 citrate synthase I	Citrate synthase	Citrate synthase	identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798 citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase 1	Mb0920, gltA2, len: 431 aa. Equivalent to Rv0896, len: 431 aa, from Mycobacterium tuberculosis strain H37Rv, (99.8%% identity in 431 aa overlap). Probable gltA2, citrate synthase 1 (EC 4.1.3.7), highly similar to O33066|NP_302405.1|NC_002677 citrate synthase 1 from Mycobacterium leprae (431 aa), FASTA scores: E(): 0, (91.0 identity in 431 aa overlap); and AAF04133.1|AF191033_1|AF191033 citrate synthase from Mycobacterium smegmatis (441 aa). Also highly similar to others e.g. AAF14286.1|AF181118_1|AF181118 citrate synthase from Streptomyces coelicolor (429 aa); P42457|CISY_CORGL CITRATE SYNTHASE from Corynebacterium glutamicum (437 aa), FASTA scores: opt: 1847, E(): 0, (63.0% identity in 433 aa overlap); etc. Also similar to two other Mycobacterium tuberculosis citrate synthases, Rv0889|MTCY31.17c|citA (373 aa), FASTA score: (29.2% identity in 274 aa overlap) and Rv1131|MTCY22G8.20|gltA1 (393 aa). Contains PS00480 Citrate synthase signature.  BELONGS TO THE CITRATE SYNTHASE FAMILY. PROBABLE CITRATE SYNTHASE I GLTA2	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark citrate synthase	IPR002020: Citrate synthase citrate synthase	Citrate synthase	similar to Salmonella typhi CT18 citrate synthase citrate synthase	Citrate synthase	similar to BR1148, citrate synthase GltA, citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Citrate synthase	Putative citrate synthase	
RICPR00794	Putative uncharacterized protein RP845	Uracil-DNA glycosylase	Putative DNA polymerase-related protein, bacteriophage-type	Similar to C-terminal part of DNA polymerase, bacteriophage-type hypothetical protein	conserved gene bacteriophage related DNA polymerase	Similar to C-terminal part of DNA polymerase, bacteriophage-type hypothetical protein	Uracil DNA glycosylase superfamily DNA polymerase bacteriophage-type	identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758 uracil-DNA glycosylase	DNA polymerase bacteriophage-type (Uracil-DNA glycosylase) protein	Uracil-DNA glycosylase	Uracil-DNA glycosylase	similar to BR0620; phage SPO1 DNA polymerase-related protein phage SPO1 DNA polymerase-related protein	DNA polymerase, bacteriophage type	Similar to rp||RP845; Ortholog to ERGA_CDS_00430 Conserved hypothetical protein	conserved hypothetical protein similar to NP_221193.1 hypothetical protein	Phage SPO1 DNA polymerase-related protein	bacteriophage-type probable DNA-directed DNA polymerase	uracil-DNA glycosylase family protein; possible DNA polymerase, bacteriophage-type	Uracil-DNA glycosylase	Similar to rp||RP845; Ortholog to ERWE_CDS_00440 Conserved hypothetical protein	Phage SPO1 DNA polymerase-related protein	Uracil-DNA glycosylase, family 4	phage SPO1 DNA polymerase-related protein	Phage SPO1 DNA polymerase-related protein	DNA polymerase-related protein	ATP/GTP-binding site motif A (P-loop):Uracil-DNA glycosylase superfamily:Phage SPO1 DNA polymerase-related protein	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 uracil-DNA glycosylase, family 4	Phage SPO1 DNA polymerase-related protein	Phage SpO1 DNA polymerase-related protein	
RICPR00795	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D	Putative uncharacterized protein	Residues 1 to 326 of 326 are 99 pct identical to residues 1 to 326 of a 326 aa protein from Escherichia coli K12 ref: NP_417085.1 suppressor of ftsH mutation	Pseudouridine Synthase	Ribosomal large subunit pseudouridine synthase D	Ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase D	Ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase)	conserved gene ribosomal large subunit pseudouridine synthase D, RluD	Ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase)	Pseudouridine synthase	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase, RluD subfamily	Pseudouridine synthase	Ribosomal large subunit pseudouridine synthase D	ribosomal large subunit pseudouridine synthase D	identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 ribosomal large subunit pseudouridine synthase D	Pseudouridine synthase	ribosomal large subunit pseudouridine synthase D	Ribosomal large subunit pseudouridine synthase D	Hypothetical protein SE0872	Pseudouridine synthase	Pseudouridine synthase	Pseudouridine synthase	
RICPR00797	Putative uncharacterized protein RP848	hypothetical protein	Putative uncharacterized protein	SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family	putative translation factor Sua5p homolog	Putative uncharacterized protein	Probable translation factor, sua5 type protein	Similar to putative translation initiation protein hypothetical protein	conserved gene SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family	Similar to putative translation initiation protein hypothetical protein	SUA5 family translation factor	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 Sua5/YciO/YrdC family protein	Probable translation initiation protein, Sua5/YciO/YrdC family	Translation factor sua5 protein	conserved protein conserved protein YwlC	translation factor SUA5	putative translation factor SUA5 family	Putative translation factor, SUA5	similar to BR0405, Sua5/YciO/YrdC family protein Sua5/YciO/YrdC family protein	Putative uncharacterized protein	conserved hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2204 conserved hypothetical protein	Hypothetical protein	conserved hypothetical protein	Similar to rp||RP848 rc||RC1315 sp|P39153|YWLC_BACSU sp|Q60369|Y062_METJA sp|P32579|SUA5_YEAST sp|P45748|YRDC_ECOLI sp|Q10618|YD01_MYCTU; Ortholog to ERGA_CDS_02950 Conserved hypothetical protein (putative translation factor SUA5 family)	universally conserved protein	identified by similarity to OMNI:NTL01LI2667; match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 Sua5/YciO/YrdC/YwlC family protein	COG0009 putative translation factor	
RICPR00796	Bifunctional methyltransferase	Methylase of polypeptide chain release factors	Bifunctional N5-glutamine S-adenosyl-L-methionine -dependent methyltransferase/tRNA (M7G46) methyltransferase	Methylase of polypeptide chain release factors	Bifunctional N5-glutamine S-adenosyl-L-methionine -dependent methyltransferase/tRNA (M7G46) methyltransferase	Bifunctional N5-glutamine S-adenosyl-L-methionine -dependent methyltransferase/tRNA (M7G46) methyltransferase	peptide release factor-glutamine N5-methyltransferase tRNA (m(7)G46) methyltransferase	Bifunctional N5-glutamine S-adenosyl-L-methionine -dependent methyltransferase/tRNA (M7G46) methyltransferase	
RICPR00798	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta chain	Residues 1 to 689 of 689 are 99 pct identical to residues 1 to 689 of a 689 aa protein from Escherichia coli O157:H7 ref: NP_312469.1 glycine tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	GlyS protein	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	glycyl-tRNA synthetase beta chain	conserved gene glycyl tRNA synthetase, beta subunit	glycyl-tRNA synthetase beta chain	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta chain	glycyl-tRNA synthetase beta chain	identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 glycyl-tRNA synthetase, beta subunit	Glycyl-tRNA synthetase, beta chain	glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	Glycyl-tRNA synthetase beta subunit	identified by similarity to SP:P56454; match to protein family HMM PF02092; match to protein family HMM TIGR00211 glycyl-tRNA synthetase, beta subunit	Glycyl-tRNA synthetase	InterProMatches:IPR002311; Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Biological Process: glycyl-tRNA aminoacylation (GO:0006426) glycyl-tRNA synthetase (beta subunit)	glycyl-tRNA synthetase beta chain	Glycine-tRNA synthetase, beta subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycyl-tRNA synthetase beta chain	glycyl-tRNA synthetase beta chain	Glycyl-tRNA synthetase beta chain	IPR002311: Glycyl-tRNA synthetase, beta subunit; IPR006194: Heterodimeric glycyl-transfer RNA synthetase glycine tRNA synthetase, beta subunit	
RICPR00799	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha chain	Residues 1 to 303 of 303 are 100 pct identical to residues 1 to 303 of a 303 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290144.1 glycine tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	glycyl-tRNA synthetase alpha chain	conserved gene glycyl tRNA synthetase, alpha subunit	glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha chain	glycyl-tRNA synthetase alpha chain	identified by similarity to SP:P00960; match to protein family HMM PF02091; match to protein family HMM TIGR00388 glycyl-tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase, alpha chain	glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	Glycyl-tRNA synthetase alpha subunit	identified by similarity to SP:P00960; match to protein family HMM PF02091; match to protein family HMM TIGR00388 glycyl-tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase	InterProMatches:IPR002310; Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Biological Process: glycyl-tRNA aminoacylation (GO:0006426) glycyl-tRNA synthetase (alpha subunit)	glycyl-tRNA synthetase alpha chain	Glycine-tRNA synthetase, alpha subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark glycyl-tRNA synthetase alpha chain	glycyl-tRNA synthetase alpha chain	Glycyl-tRNA synthetase alpha chain	IPR002310: Glycyl-tRNA synthetase, alpha subunit; IPR006194: Heterodimeric glycyl-transfer RNA synthetase glycine tRNA synthetase, alpha subunit	Glycyl-tRNA synthetase, alpha subunit	
RICPR00800	Putative uncharacterized protein RP851	DUF208	Putative uncharacterized protein	Similar to unknown protein	Similar to conserved hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to conserved hypothetical protein hypothetical protein	identified by match to protein family HMM PF02677 conserved hypothetical protein	Hypothetical cytosolic protein	Putative uncharacterized protein	Hypothetical protein SE2135	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Putative uncharacterized protein yoaD	Putative uncharacterized protein gbs1295	Putative uncharacterized protein	conserved hypothetical protein	identified by Glimmer2; putative conserved hypothetical protein	Hypothetical protein	Ortholog of S. aureus MRSA252 (BX571856) SAR2671 conserved hypothetical protein	conserved hypothetical protein	Hypothetical cytosolic protein	best blastp match gb|AAK33314.1| (AE006490) conserved hypothetical protein [Streptococcus pyogenes M1 GAS] conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein	COG1636 conserved hypothetical protein	Similar to: HI0882, Y882_HAEIN conserved hypothetical protein	Uncharacterized BCR Hypothetical protein	Uncharacterized conserved protein	conserved hypothetical protein	Uncharacterized conserved protein	
RICPR00801	PROLINE/BETAINE TRANSPORTER	transporter, major facilitator family identified by match to protein family HMM PF00083; match to protein family HMM PF07690	Proline/betaine transporter	General substrate transporter	Major facilitator superfamily MFS_1	Proline/betaine transporter	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	General substrate transporter PFAM: General substrate transporter; major facilitator superfamily MFS_1 KEGG: pde:Pden_1693 major facilitator superfamily MFS_1	General substrate transporter	Putative proline/betaine transporter	Major facilitator superfamily MFS_1	Transporter	MFS transporter	
RICPR00802	Uncharacterized protein RP853	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00803	Uncharacterized protein RP854	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00804	Uncharacterized protein RP855	Similar to sp|Q9ZCA5|Y855_RICPR; Ortholog to ERGA_CDS_01360 Conserved hypothetical protein	Similar to sp|Q9ZCA5|Y855_RICPR; Ortholog to ERWE_CDS_01400 Conserved hypothetical protein	unknown	conserved domain protein	unknown	conserved hypothetical protein identified by similarity to GB:AAS14460.1	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Glycyl-tRNA synthetase subunit alpha	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	
RICPR00805	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Residues 1 to 840 of 840 are 99 pct identical to residues 37 to 876 of a 876 aa protein from Escherichia coli O157:H7 ref: NP_311581.1 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	conserved gene alanyl tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM TIGR00344 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM TIGR00344 alanyl-tRNA synthetase	Alanyl-tRNA synthetase	alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	Alanyl-tRNA synthetase	
RICPR00806	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	Residues 1 to 270 of 270 are 99 pct identical to residues 1 to 270 of a 270 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_288892.1 pseudouridylate synthase I	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA-pseudouridine synthase I	conserved gene tRNA pseudouridine synthase A	tRNA-pseudouridine synthase I	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase	identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A (pseudouridylate synthase I)	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071 tRNA pseudouridine synthase A	tRNA pseudouridine synthase A	Pseudouridylate synthase	
RICPR00807	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor	identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 RNA polymerase sigma-70 factor RpoD	identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546 RNA polymerase sigma factor RpoD	RNA polymerase sigma factor	DNA-directed RNA polymerase sigma 70 subunit, RpoD	RNA polymerase sigma factor	similar to BR1479, RNA polymerase sigma-70 factor RpoD, RNA polymerase sigma-70 factor	RNA polymerase sigma factor	Similar to sp|P33451|RPSD_RICPR sp|P33452|RPSD_AGRT5 sp|Q59753|RPSD_RHIME sp|P52324|RPSD_CAUCR; Ortholog to ERGA_CDS_03350 RNA polymerase sigma factor rpoD	COG0568 RpoD DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) RNA polymerase sigma factor	COG0568 RNA polymerase sigma-70 factor	Sigma-70; Similar to: HI0533, RPSD_HAEIN RNA polymerase sigma factor RpoD	DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) RpoD protein	RNA polymerase sigma factor rpoD	RNA polymerase sigma factor RpoD	sigma70 RNA polymerase sigma factor	rpoD (Sigma-70) RNA polymerase sigma factor	Similar to sp|P33451|RPSD_RICPR sp|P33452|RPSD_AGRT5 sp|Q59753|RPSD_RHIME sp|P52324|RPSD_CAUCR; Ortholog to ERWE_CDS_03390 RNA polymerase sigma factor rpoD	Sigma-70 region 1.2	RNA polymerase sigma factor	RpoD	RNA polymerase sigma factor rpoD	Sigma-70 factor family:Sigma-70 factor, region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essent...	Gene neighborhood linkage with DNA primase (DnaG) RNA polymerase sigma factor RpoD	RNA polymerase sigma factor	sigma 38 (RpoS)	RNA polymerase sigma factor RpoD identified by similarity to SP:Q59753; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542	sigma 70 (RpoD)	
RICPR00808	DNA primase	Residues 1 to 581 of 581 are 100 pct identical to residues 1 to 581 of a 581 aa protein from Escherichia coli O157:H7 ref: NP_311976.1 DNA primase	DNA primase	DNA primase	CHC2 zinc finger	DnaG protein	Probable dna primase protein	DNA primase	conserved gene DNA primase DnaG	DNA primase	identified by similarity to SP:P02923; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391 DNA primase	DNA primase	DNA primase	DnaG	DNA primase protein	DNA primase	Mb2372c, dnaG, len: 639 aa. Equivalent to Rv2343c, len: 639 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 639 aa overlap). Probable dnaG, DNA primase (EC 2.7.7.-), equivalent to O52200|PRIM_MYCSM|DNAG DNA PRIMASE from Mycobacterium smegmatis (636 aa), FASTA scores: opt: 3504, E(): 5.5e-202, (81.55% identity in 639 aa overlap); and Q9CCG2|DNAG|ML0833 DNA PRIMASE from Mycobacterium leprae (642 aa), FASTA scores: opt: 3443, E(): 2.5e-198, (80.4% identity in 642 aa overlap). Also highly similar to many DNA primases e.g.  Q9S1N4|PRIM_STRCO|DNAG|SC7A8.07c from Streptomyces coelicolor (641 aa), FASTA scores: opt: 1899, E(): 5.1e-106, (47.9% identity in 643 aa overlap); P74893|PRIM_SYNP7|DNAG from Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) (616 aa), FASTA scores: opt: 860, E(): 6.6e-44, (35.3% identity in 513 aa overlap); P05096|PRIM_BACSU from Bacillus subtilis (603 aa) FASTA scores: opt: 800, E(): 2.5e-40, (33.7% identity in 430 aa overlap); etc. PROBABLE DNA PRIMASE DNAG	DNA primase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA primase	DNA primase, DnaG	similar to BR1480, DNA primase DnaG, DNA primase	DNA primase	DNA primase	DNA primase	DNA primase	Similar to sp|P30103|PRIM_RICPR rc||dnaG sp|P71481|PRIM_LEGPN sp|P33655|PRIM_CLOAB; Ortholog to ERGA_CDS_03340 DNA primase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA primase	COG0358 DnaG DNA primase (bacterial type) similar to NP_539447.1; go_process: 0006260 DNA primase	DNA primase	
RICPR00809	Uncharacterized protein RP860	Dolichol kinase	membrane protein	Dolichol kinase	membrane protein	phosphatidate cytidylyltransferase PFAM: phosphatidate cytidylyltransferase KEGG: plt:Plut_1685 membrane protein	predicted protein go_component: membrane; go_function: phosphatidate cytidylyltransferase activity; go_process: phospholipid biosynthesis	Putative uncharacterized protein	Dolichol kinase	Dolichol kinase	Dolichol kinase	cytidylyltransferase family protein	DNA primase	Putative uncharacterized protein	Dolichol kinase	Putative uncharacterized protein	phosphatidate cytidylyltransferase PFAM: phosphatidate cytidylyltransferase KEGG: plt:Plut_1685 membrane protein	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Conserved hypothetical integral membrane protein	Phosphatidate cytidylyltransferase	Phosphatidate cytidylyltransferase	Putative uncharacterized protein	Dolichol kinase	Phosphatidate cytidylyltransferase	
RICPR00810	Transcription elongation factor greA	Transcription elongation factor greA	Residues 1 to 158 of 158 are 100 pct identical to residues 1 to 158 of a 158 aa protein GREA_ECOLI sp: P21346 transcription elongation factor GreA (transcript cleavage factor GreA)	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor	transcription elongation factor GreA	conserved gene transcription elongation factor GreA	transcription elongation factor GreA	Transcription elongation factor greA 2	identified by similarity to SP:P80240; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 transcription elongation factor GreA	Transcription elongation factor greA	GreA Transcription elongation factor	identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 transcription elongation factor GreA	Transcription elongation factor	transcription elongation factor	Transcription elongation factor greA	Transcription elongation factor greA	Transcription elongation factor	identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 transcription elongation factor GreA	Transcription elongation factor	Transcription elongation factor	Transcription elongation factor greA	Mb1109c, greA, len: 164 aa. Equivalent to Rv1080c, len: 164 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 164 aa overlap). Probable greA, transcription elongation factor G, closest to P46808|GREA_MYCLE TRANSCRIPTION ELONGATION FACTOR G from Mycobacterium leprae (202 aa), FASTA scores: opt: 1005, E(): 0, (94.5% identity in 164 aa overlap); and similar to many e.g. P21346|GREA_ECOLI from Escherichia coli (158 aa), FASTA scores: opt: 257, E(): 5.7e-10, (37.2% identity in 148 aa overlap); etc. Contains two PS00829 and one PS00830 Prokaryotic transcription elongation factors signatures 1 and 2, respectively. BELONGS TO THE GREA/GREB FAMILY. PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage factor greA)	InterProMatches:IPR006359; Molecular Function: DNA binding (GO:0003677), Molecular Function: transcriptional elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355) transcription elongation factor	
RICPR00811	NAD(P) transhydrogenase subunit alpha part 2	Probable transmembrane NAD(P) transhydrogenase	NAD(P) transhydrogenase subunit beta (Pyridine nucleotide transhydrogenase subunit alpha II)	conserved gene transmembrane NAD(P) transhydrogenase	NAD(P) transhydrogenase subunit beta (Pyridine nucleotide transhydrogenase subunit alpha II)	Probable transmembrane NAD(P) transhydrogenase transmembrane protein	NAD/NADP transhydrogenase alpha subunit	PntAB	PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAB	Mb0161, pntAb, len: 110 aa. Equivalent to Rv0156, len: 110 aa, from Mycobacterium tuberculosis strain H37Rv, (99.1% identity in 110 aa overlap). Probable pntAb, second part of NAD(P) transhydrogenase subunit alpha, integral membrane protein, similar to C-terminus of others e.g.  Q59764 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT PNTAB (139 aa), FASTA scores: opt: 247, E(): 1.9e-11, (45.5% identity in 88 aa overlap). PROBABLE NAD(P) TRANSHYDROGENASE (SUBUNIT ALPHA) PNTAb [SECOND PART; INTEGRAL MEMBRANE PROTEIN] (PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA) (NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA)	similar to BRA0972, NAD(P) transhydrogenase, alpha2 subunit PntAB, NAD(P) transhydrogenase, alpha2 subunit	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme pyridine nucleotide transhydrogenase (proton pump), alpha subunit (part2)	NAD(P) transhydrogenase subunit alpha part 2	NAD/NADP transhydrogenase alpha subunit	identified by similarity to SP:Q59764 NAD(P) transhydrogenase alpha subunit part 2	identified by similarity to SP:Q59764 NAD(P) transhydrogenase, alpha subunit part 2	NAD(P) transhydrogenase subunit alpha	NAD(P) transhydrogenase subunit alpha	NAD/NADP transhydrogenase alpha subunit	Antifreeze protein, type I:Pollen allergen Poa pIX/Phl pVI, C-terminal	Putative NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein	nicotinamide nucleotide transhydrogenase, subunit alpha	NAD(P) transhydrogenase, subunit alpha part 2 Similar to C-terminal of Escherichia coli NAD(P) transhydrogenase subunit alpha PntA SWALL:PNTA_ECOLI (SWALL:P07001)	conserved hypothetical protein	probable transmembrane NAD(P) transhydrogenase (alpha subunit part 2)	putative NAD(P) transhydrogenase, alpha subunit	Putative nicotinamide nucleotide transhydrogenase, subunit alpha 2	NAD(P) transhydrogenase subunit alpha part	
RICPR00812	NAD(P) transhydrogenase subunit alpha part 1	Alanine dehydrogenase and pyridine nucleotide transhydrogenase	pyridine nucleotide transhydrogenase, alpha subunit	conserved gene alanine dehydrogenase and pyridine nucleotide transhydrogenase	pyridine nucleotide transhydrogenase, alpha subunit	pyridine nucleotide transhydrogenase alpha subunit	NAD(P) transhydrogenase, alpha subunit	NAD/NADP transhydrogenase alpha subunit	PntAA	NAD(P) transhydrogenase, alpha subunit	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark pyridine nucleotide transhydrogenase	Nicotinamide nucleotide transhydrogenase, alpha subunit 1	similar to BRA0973, NAD(P) transhydrogenase, alpha subunit PntA, NAD(P) transhydrogenase, alpha subunit	Pyridine nucleotide transhydrogenase	C-terminal Alanine dehydrogenase/PNT	NAD/NADP transhydrogenase alpha subunit	identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222 NAD(P) transhydrogenase, subunit alpha part 1	identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222 NAD(P) transhydrogenase, alpha subunit part 1	Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal	Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal	NAD(P) transhydrogenase subunit alpha	alanine dehydrogenase/PNT	RecA bacterial DNA recombination protein:Alanine dehydrogenase/PNT, C-terminal:Alanine dehydrogenase/PNT, N-terminal	Alanine dehydrogenase/PNT-like protein	NAD(P)(+) transhydrogenase (AB-specific)	Alanine dehydrogenase/PNT-like	pseudo NAD(P) transhydrogenase subunit alpha part 1 (pseudogene) Similar to the N-terminal part of Escherichia coli NAD(P) transhydrogenase PntA SWALL:PNTA_ECOLI (SWALL:P07001) (510 aa)	NAD(P)(+) transhydrogenase (AB-specific)	alanine dehydrogenase/PNT-like	
RICPR00813	Uncharacterized protein RP864	Ortholog to ERWE_CDS_08530 Hypothetical protein	unknown	hypothetical protein	Outer membrane lipoprotein-sorting protein LolA	Outer-membrane lipoproteins carrier protein	conserved hypothetical protein identified by similarity to PIR:G97866; match to protein family HMM PF03548	Outer membrane lipoprotein-sorting protein	Putative uncharacterized protein	Outer membrane lipoprotein-sorting protein LolA	Outer membrane lipoprotein-sorting protein LolA	Putative uncharacterized protein	hypothetical protein	Transcription elongation factor GreA	Outer membrane lipoprotein carrier protein LolA precursor	Outer membrane lipoprotein carrier protein LolA	Outer membrane lipoprotein carrier protein LolA, putative	Putative uncharacterized protein	
RICPR00814	DNA POLYMERASE III SUBUNITS GAMMA AND TAU	DNA polymerase III, gamma/tau subunit	similar to BR0034, DNA polymerase III, gamma and tau subunits DnaX, DNA polymerase III, gamma and tau subunits	Similar to rp||dnaX rc||dnaX sp|P57553|DP3X_BUCAI sp|Q8K983|DP3X_BUCAP; Ortholog to ERGA_CDS_09410 DNA polymerase III gamma and tau chains	DNA-directed DNA polymerase III chain	DNA-directed DNA polymerase gamma/tau subunit	Similar to rp||dnaX rc||dnaX sp|P57553|DP3X_BUCAI sp|Q8K983|DP3X_BUCAP; Ortholog to ERWE_CDS_09490 DNA polymerase III gamma and tau chains	DNA polymerase III gamma and tau chains	DNA polymerase III gamma/tau subunits	DNA-directed DNA polymerase	Replication factor C conserved domain:ATP/GTP-binding site motif A (P-loop):AAA ATPase:AAA ATPase, central region	Citation: PMID:1870125 JMolBiol 1991Aug 5;220(3):649-58. 11029431 JBacteri2000 Nov;182(21):6106-13.  8969294 JMolBiol 1996;264(3):412-25. DNA polymerase III tau and gamma subunits	DNA polymerase III, subunits gamma and tau	DNA polymerase III gamma and tau chains	putative DNA polymerase III similarity:fasta; with=UniProt:DP3X_ECOLI (EMBL:U00096); Escherichia coli.; dnaX; DNA polymerase III subunit tau (EC 2.7.7.7) [Contains: DNA polymerase III subunit gamma].; length=643; id 36.170; 564 aa overlap; query 18-560; subject 3-540 similarity:fasta; with=UniProt:Q8UJ42 (EMBL:C97370); Agrobacterium tumefaciens (strain C58/ATCC 33970).; DNA polymerase III, tau subunit (AGR_C_147p).; length=624; id 76.874; 627 aa overlap; query 1-625; subject 1-624	DNA polymerase III, subunits gamma and tau KEGG: sil:SPO3550 DNA polymerase III, gamma and tau subunits, ev=0.0, 78% identity TIGRFAM: DNA polymerase III, subunits gamma and tau: (6.1e-172) PFAM: AAA ATPase, central region: (3.7e-07) SMART: ATPase: (4.9e-09)	DNA polymerase III, subunits gamma and tau identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III, subunits gamma and tau identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III, gamma/tau subunits	DNA polymerase III, subunits gamma and tau KEGG: rsp:RSP_0710 DNA polymerase III subunits gamma and tau TIGRFAM: DNA polymerase III, subunits gamma and tau PFAM: AAA ATPase, central domain protein SMART: AAA ATPase	DNA polymerase III, tau subunit	DNA-directed DNA polymerase III chain, putative	DNA polymerase III, subunits gamma and tau KEGG: rsp:RSP_0710 DNA polymerase III subunits gamma and tau TIGRFAM: DNA polymerase III, subunits gamma and tau PFAM: AAA ATPase, central domain protein SMART: AAA ATPase	DNA polymerase III, gamma and tau subunits equivalent gene in S.pneumoniae TIGR4 = SP0865; equivalent gene in S.pneumoniae R6 = spr0769; identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397	DNA polymerase III, subunits gamma and tau KEGG: mlo:mlr5503 DNA polymerase III tau TIGRFAM: DNA polymerase III, subunits gamma and tau PFAM: AAA ATPase, central region SMART: ATPase	Putative DNA polymerase III	DNA polymerase III gamma and tau chains	Replication factor C conserved domain:ATP/GTP- binding site motif A	DNA polymerase III, subunits gamma and tau	
RICPR00815	UPF0133 protein RP866	hypothetical protein	UPF0133 protein LIC_13475	Residues 6 to 114 of 114 are 100 pct identical to residues 1 to 109 of a 109 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_286212.1 orf, conserved hypothetical protein	UPF0133 protein YPO3121/y1061/YP_0808	UPF0133 protein NE0434	UPF0133 protein SAV0479	UPF0133 protein WIGBR5260	UPF0133 protein RSc1192	UPF0133 protein plu3840	Similar to hypothetical protein hypothetical protein	conserved gene hypothetical protein	Similar to hypothetical protein hypothetical protein	UPF0133 protein lp_0699	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	Hypothetical cytosolic protein	identified by similarity to PIR:A82247; match to protein family HMM PF02575; match to protein family HMM TIGR00103 conserved hypothetical protein TIGR00103	UPF0133 protein CV_1611	conserved hypothetical protein	UPF0133 protein XF_1808	Hypothetical UPF0133 protein SE2306	UPF0133 protein MAP_0317c	Putative uncharacterized protein	UPF0133 protein Rv3716c/MT3819	Mb3743c, -, len: 133 aa. Equivalent to Rv3716c, len: 133 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 133 aa overlap). Conserved hypothetical protein, equivalent to O69519|Y1B6_MYCLE|ML2330|MLCB2407.20 HYPOTHETICAL 11.9 KDA PROTEIN from Mycobacterium leprae (116 aa), FASTA scores: opt: 616, E(): 2.6e-21, (84.55% identity in 110 aa overlap). Also highly similar to hypothetical ~12 kDa proteins in the vicinity of recR from other bacteria e.g.  Q9XAI3|YT3D_STRCO|SC66T3.30c HYPOTHETICAL 11.7 KDA PROTEIN from Streptomyces coelicolor (115 aa), FASTA scores: opt: 379, E(): 9.5e-11, (50.8% identity in 122 aa overlap); BAB56641|SAV0479 CONSERVED HYPOTHETICAL PROTEIN from Staphylococcus aureus subsp. aureus Mu50 (105 aa) FASTA scores: opt: 295, E(): 4.9e-07, (41.75% identity in 103 aa overlap); Q99WC4P24281|YAAK_BACSU HYPOTHETICAL 11.8 KDA PROTEIN IN DNAZ-RECR INTERGENIC REGION from Bacillus subtilis (107 aa), FASTA scores: opt: 272, E(): 5.3e-06, (39.4% identity in 104 aa overlap); P17577|YBAB_ECOLI|B0471|Z0588|ECS0524 from Escherichia coli strain K and O157:H7 (109 aa), FASTA scores: opt: 256, E(): 2.8e-05, (38.0% identity in 100 aa overlap); etc. Contains probable coiled-coil domain from aa 1-40.  SEEMS TO BELONG TO THE UPF0133 FAMILY. CONSERVED HYPOTHETICAL PROTEIN	conserved hypothetical YaaK	conserved hypothetical protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	hypothetical protein	
RICPR00816	Uncharacterized protein RP867	Predicted aspartyl protease	similar to BR0864, conserved hypothetical protein conserved hypothetical protein	Conserved hypothetical protein	Eukaryotic/viral aspartic protease, active site	COG3577.1, COG3577 Predicted aspartyl protease truncated Aligment with best his is also truncated conserved hypothetical protein	conserved hypothetical protein	Putative aspartyl protease	putative transmembrane protein similarity:fasta; with=UniProt:Q8UE68_AGRT5 (EMBL:AE008109); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu1893 (AGR_C_3474p).; length=235; id 58.974; 234 aa overlap; query 1-233; subject 1-234	conserved hypothetical protein TIGRFAM: conserved hypothetical protein: (7.7e-53) KEGG: sil:SPO2449 hypothetical protein, ev=2e-53, 54% identity	conserved hypothetical protein identified by similarity to GB:AAS13980.1; match to protein family HMM TIGR02281	hypothetical conserved protein similar to AGR_C_3474p [Agrobacterium tumefaciens] Similar to swissprot:Q8UE68 Putative location:bacterial inner membrane Psort-Score: 0.6116	conserved hypothetical protein	conserved hypothetical 25.1 kDa protein in CobV 5'region (orf1) KEGG: atc:AGR_C_3474 hypothetical 25.1 kDa protein in CobV 5'region (orf1)	conserved hypothetical protein KEGG: rsp:RSP_2897 hypothetical protein	conserved hypothetical protein TIGRFAM: conserved hypothetical protein KEGG: bmb:BruAb1_0876 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein precursor	Putative aspartyl protease	Putative uncharacterized protein	Putative aspartyl protease	Aspartyl protease-like protein	Conserved hypothetical transmembrane signal peptide protein precursor	Putative aspartyl protease	Putative uncharacterized protein	Putative uncharacterized protein precursor	conserved hypothetical protein	retroviral aspartyl protease family protein	Putative uncharacterized protein	
RICPR00817	GLUTAMINE TRANSPORT ATP-BINDING PROTEIN GLNQ	Glutamine ABC transporter ATP-binding protein	Glutamine ABC transporter ATP-binding protein	Glutamine ABC transporter ATP-binding protein	Glutamine ABC transporter ATP-binding protein	Glutamine ABC transporter ATP-binding protein	ABC transporter ATP-binding protein	hypothetical protein	Glutamine ABC transporter ATP-binding protein	Putative uncharacterized protein	
RICPR00818	Putative uncharacterized protein RP869	PhnP protein	phosphonate matabolism protein PhnP homolog, metallo-beta-lactamase superfamily	identified by similarity to GB:AAK23796.1 conserved hypothetical protein	Probable hydrolase protein	Metal-dependent hydrolase protein	similar to BR0997, conserved hypothetical protein conserved hypothetical protein	Putative uncharacterized protein	PhnP protein	PhnP protein	Similar to rc||phnP; Ortholog to ERGA_CDS_01390 PhnP protein	conserved family - putative metal-dependent hydrolase hypothetical protein	beta-lactamase; COG1235 metal-dependent hydrolase	Similar to Borrelia burgdorferi PhnP protein BB0533 SWALL:O51483 (EMBL:AE001155) (253 aa) fasta scores: E(): 1.5e-32, 35.22% id in 247 aa, and to Escherichia coli PhnP protein B4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 2.7e-08, 27.09% id in 262 aa putative hydrolase	PhnP protein	metallo-beta-lactamase family protein	Metal-dependent hydrolase of the beta-lactamase superfamily	Similar to rc||phnP; Ortholog to ERWE_CDS_01430 PhnP protein	Metal-dependent hydrolases of the beta-lactamase superfamily I	conserved hypothetical protein	Beta-lactamase-like	Beta-lactamase-like	ATP-binding protein PhnP	Phosphonate metabolism	Citation: PMID: 8335257 Gene. 1993 Jul 15;129(1):27-32. PhnP-like protein	Beta-lactamase-like protein	beta-lactamase-like	Beta-lactamase-like	metallo-beta-lactamase family protein identified by match to protein family HMM PF00753	
RICPR00819	Putative uncharacterized protein RP870	unknown	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	phosphoesterase, PAP2 family	Putative uncharacterized protein	Putative membrane-associated phospholipid phosphatase	Phosphoesterase PA-phosphatase related	PAP2 family protein	Putative uncharacterized protein	
RICPR00820	Uncharacterized protein RP871	hypothetical protein YCF84	identified by match to protein family HMM PF03739 membrane protein, putative	Unclassified ABC-type transport system permease	Permease protein	Putative inner membrane protein; predicted permease	similar to BR0687, this region contains a Bru-RS2 like element, hypothetical membrane protein hypothetical membrane protein	Putative uncharacterized protein	Hypothetical protein	Hypothetical transmembrane protein	Predicted permease YjgP/YjgQ family protein	ortholog to Escherichia coli bnum: b4261; MultiFun: Cell structure 6.1; Transport 4 putative transmembrane protein, transport	Predicted permeases	Best Blastp Hit: emb|CAB84987.1| (AL162757) conserved integral membrane hypothetical protein [Neisseria meningitidis] COG0795 Predicted permeases conserved hypothetical protein	permease YjgP/YjgQ	Predicted permease YjgP/YjgQ family	Conserved hypothetical membrane protein	COG0795, Predicted permeases. Predicted permease	putative permease, YjgP/YjgQ family identified by match to protein family HMM PF03739	permease YjgP/YjgQ	permease YjgP/YjgQ	putative membrane protein, YjgP/YjgQ family identified by match to protein family HMM PF03739	Permease-like protein	permease YjgP/YjgQ	Putative permeases	conserved hypothetical protein similarity:fasta; with=UniProt:Q8UGD0_AGRT5 (EMBL:AE008040); Agrobacterium tumefaciens (strain C58/ATCC 33970).; Hypothetical protein Atu1108 (AGR_C_2052p).  Hypothetical protein Atu1108 (AGR_C_2052p).; length=389; id 59.585; 386 aa overlap; query 1-385; subject 1-385	permease YjgP/YjgQ	permease YjgP/YjgQ PFAM: permease YjgP/YjgQ: (7e-30) KEGG: sil:SPO3780 membrane protein, putative, ev=1e-90, 46% identity	permease YjgP/YjgQ	
RICPR00821	Uncharacterized protein RP872	similar to BR0690, conserved hypothetical protein conserved hypothetical protein	unknown	DNA polymerase III chi subunit, HolC	DNA polymerase III chi subunit, HolC	DNA polymerase III chi subunit HolC	putative DNA polymerase III subunit similarity:fasta; with=UniProt:HOLC_PSEAE (EMBL:AE004800); Pseudomonas aeruginosa.; holC; DNA polymerase III, chi subunit (EC 2.7.7.7).; length=142; id 27.857; 140 aa overlap; query 1-134; subject 1-134 similarity:fasta; with=UniProt:Q92QY6; Rhizobium meliloti (Sinorhizobium meliloti).; Hypothetical protein SMc00586.; length=149; id 71.812; 149 aa overlap; query 1-149; subject 1-149	DNA polymerase III chi subunit, HolC	putative DNA polymerase III, chi subunit protein similar to SMc00586 [Sinorhizobium meliloti], AGR_C_2056p [Agrobacterium tumefaciens] and BMEI1260[Brucella melitensis] Similar to swissprot:Q92QY6 Putative location:bacterial cytoplasm Psort-Score: 0.3573	DNA polymerase III chi subunit, HolC precursor	DNA polymerase III chi subunit, HolC PFAM: DNA polymerase III chi subunit, HolC KEGG: mag:amb3674 DNA polymerase III, chi subunit	Putative uncharacterized protein	DNA polymerase III chi subunit HolC precursor	DNA polymerase III chi subunit	DNA polymerase III subunit chi	DNA polymerase III chi subunit HolC	DNA polymerase III chi subunit HolC	DNA polymerase III subunit chi	DNA polymerase III subunit chi	DNA polymerase III chi subunit HolC GO_function: DNA binding [GO ID 0003677]; GO_process: DNA replication [GO ID 0006260]	DNA polymerase III, chi subunit	DNA polymerase III subunit chi	DNA polymerase III chi subunit HolC	DNA polymerase III chi subunit HolC	DNA polymerase III chi subunit HolC	DNA polymerase III chi subunit HolC precursor	DNA polymerase III chi subunit, HolC	Probable DNA polymerase III protein, chi subunit	DNA polymerase III, chi subunit	
RICPR00822	Succinyl-diaminopimelate desuccinylase	Residues 1 to 375 of 375 are 100 pct identical to residues 1 to 375 of a 375 aa protein from Escherichia coli K12 ref: NP_416967.1 N-succinyl-diaminopimelate deacylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	conserved gene N-succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	identified by similarity to SP:P24176; match to protein family HMM PF01546; match to protein family HMM TIGR01246 succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01246 succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark succinyl-diaminopimelate desuccinylase	Acetylornithine deacetylase	IPR001261: ArgE/dapE/ACY1/CPG2/yscS N-succinyl-diaminopimelate deacylase	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase	similar to Salmonella typhi CT18 succinyl-diaminopimelate desuccinylase succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	similar to BRA1031, succinyl-diaminopimelate desuccinylase DapE, succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE	Succinyl-diaminopimelate desuccinylase	Succinyl-diaminopimelate desuccinylase	COG0624 ArgE acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and similar to NP_419094.1 succinyl-diaminopimelate desuccinylase	
RICPR00823	Uncharacterized protein RP875	Uncharacterized conserved protein	unknown	protein of unknown function DUF218 PFAM: protein of unknown function DUF218 KEGG: mlo:mlr3524 hypothetical protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	Putative uncharacterized protein	hypothetical protein	Putative uncharacterized protein	
RICPR00824	Octanoyltransferase	Octanoyltransferase	Residues 1 to 213 of 213 are 98 pct identical to residues 1 to 213 of a 213 aa protein LIPB_ECOLI sp: P30976 lipoate-protein ligase B (lipoate biosynthesis protein B)	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	member of a putative type I secretion system Legionella secretion system protein X	conserved gene lipoate-protein ligase B	member of a putative type I secretion system Legionella secretion system protein X	lipoate-protein ligase B	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 lipoate-protein ligase B	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	Lipoyltransferase	Octanoyltransferase	Mb2240, lipB, len: 230 aa. Equivalent to Rv2217, len: 230 aa, from Mycobacterium tuberculosis strain H37Rv, (99.6% identity in 230 aa overlap). Probable lipB, similar to SW:LIPB_ECOLI P30976 liopate biosynthesis protein B ( 33.8% identity in 160 aa overlap). Equivalent to gp|Z98741| MLCB22_11 Mycobacterium leprae (235 aa). FASTA score: opt: 1124, E(): 0; 78.4% identity in 218 aa overlap Probable lipoate biosynthesis protein B LipB	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark lipoate biosynthesis protein B	Octanoyltransferase	IPR000544: Lipoate-protein ligase B; IPR002052: N-6 Adenine-specific DNA methylase putative ligase in lipoate biosynthesis	Lipoate-protein ligase B	similar to Salmonella typhi CT18 lipoate-protein ligase B (lipoate biosynthesis protein B) lipoate-protein ligase B (lipoate biosynthesis protein B)	similar to BRA0589, lipoate-protein ligase B LipB, lipoate-protein ligase B	Octanoyltransferase	Octanoyltransferase	Octanoyltransferase	
RICPR00825	30S ribosomal protein S16	30S ribosomal protein s16	30S ribosomal protein S16	Residues 1 to 82 of 82 are 100 pct identical to residues 1 to 82 of a 82 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_289162.1 30S ribosomal subunit protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30s ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	Highly similar to 30S ribosomal protein S16 hypothetical protein	conserved gene 30S ribosomal protein S16	Highly similar to 30S ribosomal protein S16 hypothetical protein	30S ribosomal protein S16	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002 ribosomal protein S16	30S ribosomal protein S16	SSU ribosomal protein S16P	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002 ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	30S ribosomal protein S16	identified by similarity to SP:P02372; match to protein family HMM PF00886; match to protein family HMM TIGR00002 ribosomal protein S16	Ribosomal protein S16	InterProMatches:IPR000307; Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: protein biosynthesis (GO:0006412) ribosomal protein S16 (BS17)	
RICPR00826	50S ribosomal protein L33	Residues 1 to 55 of 55 are 100 pct identical to residues 1 to 55 of a 55 aa protein from Escherichia coli O157:H7 EDL933 ref: NP_290216.1 50S ribosomal subunit protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal subunit protein L33	conserved gene 50S ribosomal protein L33	50S ribosomal subunit protein L33	identified by similarity to SP:P02436 ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33 1	50S ribosomal protein L33	50S ribosomal protein L33 1	Mb2083c, rpmG1, len: 54 aa. Equivalent to Rv2057c, len: 54 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 54 aa overlap). Probable rpmG1, ribosomal protein L33. FASTA results: RL33_ECOLI P02436 50S ribosomal protein L33 (54 aa) opt: 183; E(): 1.6e-09; 51.0% identity in 49 aa overlap. Note that previously known as rpmG. Probable ribosomal protein L33	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark 50S ribosomal protein L33	IPR001705: Ribosomal protein L33 50S ribosomal subunit protein L33	Ribosomal protein L33	similar to Salmonella typhi CT18 50S ribosomal subunit protein L33 50S ribosomal subunit protein L33	similar to BRA0609, RpmG, ribosomal protein L33 RpmG, ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	50S ribosomal protein L33	Ortholog to ERGA_CDS_02170 50S ribosomal protein L33	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type s : structure 50S ribosomal protein L33	COG0267 RpmG ribosomal protein L33; go_component: 0005840 50S ribosomal protein L33	
RICPR00827	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	MutL; DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	In low GC gram positive bacteria, this gene is generally known as hexA; in other prokaryotes the functional equivalent is known as mutS.; identified by similarity to EGAD:37608; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 DNA mismatch repair protein HexB	DNA mismatch repair protein MutL	DNA mismatch repair protein MutL	identified by match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585 DNA mismatch repair protein MutL	DNA mismatch repair protein	DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair protein	InterProMatches:IPR002099; DNA mismatch repair, Biological Process: mismatch repair (GO:0006298) MutL	DNA mismatch repair protein MutL	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark DNA mismatch repair protein MutL	MutL DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair enzyme MutL, predicted ATPase	similar to BRA0218, DNA mismatch repair protein MutL MutL, DNA mismatch repair protein	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair protein mutL	DNA mismatch repair protein	identified by match to PFAM protein family HMM PF01119; In low GC gram positive bacteria, this gene is generally known as hexB; in other prokaryotes the functional equivalent is known as mutL. DNA mismatch repair protein HexB	

RICPR00828	PROLINE/BETAINE TRANSPORTER	Hypothetical protein SE1838	identified by similarity to SP:P25744; match to protein family HMM PF00083 major facilitator family transporter	MFS type sugar transporter PFAM00083 Proline/betaine transporter	Proline/betaine transporter	Major facilitator superfamily (MFS) metabolite (Proline/betaine)/H+ symporter	pseudo putative multi-drug resistance efflux pump (pseudogene) Pseudogene. This CDS contains an in-frame TGA stop codon.	Complete genome	Putative oxalate:formate antiporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Proline/betaine transporter	Major facilitator superfamily MFS_1	hypothetical protein	major facilitator superfamily MFS_1 PFAM: General substrate transporter; major facilitator superfamily MFS_1 KEGG: pen:PSEEN3661 permease, MFS superfamily	DNA mismatch repair protein	Major facilitator superfamily MFS_1	Putative transporter	Major facilitator family transporter	Putative multi-drug resistance efflux pump	Major facilitator superfamily MFS_1	Major facilitator superfamily MFS_1	Proline/betaine transporter	Proline/betaine transporter	MFS permease	major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: glo:Glov_3237 major facilitator superfamily MFS_1	
RICPR00829	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	oxygen-dependent coproporphyrinogen III oxidase	conserved gene oxygen-dependent coproporphyrinogen III oxidase	oxygen-dependent coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	identified by match to protein family HMM PF01218 coproporphyrinogen III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen III oxidase protein	IPR001260: Coproporphyrinogen III oxidase coproporphyrinogen III oxidase	Coproporphyrinogen III oxidase	similar to Salmonella typhi CT18 coproporphyrinogen III oxidase coproporphyrinogen III oxidase	similar to BR1550, coproporphyrinogen III oxidase, aerobic HemF, coproporphyrinogen III oxidase	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen-III oxidase, aerobic	Coproporphyrinogen III oxidase	Similar to sp|Q9ZC86|HEM6_RICPR sp|Q92FV8|HEM6_RICCN; Ortholog to ERGA_CDS_04670 Coproporphyrinogen III oxidase	Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme coproporphyrinogen III oxidase	COG0408 HemF coproporphyrinogen III oxidase similar to NP_221228.1; go_process: 0006779 coproporphyrinogen III oxidase	Coproporphyrinogen-III oxidase, aerobic	COG0408 coproporphyrinogen III oxidase	coproporphyrinogen III oxidase	
RICPR00830	UPF0093 membrane protein RP883	Probable transmembrane protein	similar to conserved hypothetical protein hypothetical protein	conserved gene transmembrane protein	similar to conserved hypothetical protein hypothetical protein	hypothetical protein	identified by match to protein family HMM PF03653 membrane protein, putative	Putative uncharacterized protein	Putative uncharacterized protein	Uncharacterized conserved membrane protein	identified by similarity to SP:Q9ZJD5; match to protein family HMM PF03653; match to protein family HMM TIGR00701 conserved hypothetical protein TIGR00701	Putative uncharacterized protein	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark conserved hypothetical protein	Predicted membrane protein	Putative uncharacterized protein	similar to BR2065, membrane protein, hypothetical hypothetical membrane protein	Putative uncharacterized protein	Hypothetical UPF0093 protein JHP1377	Conserved hypothetical inner membrane protein	conserved hypothetical protein	Similar to sp|Q9ZC85|Y883_RICPR rc||RC1372 sp|Q53229|YRH1_RHOSH sp|Q9ZJD5|YE84_HELPJ; Ortholog to ERGA_CDS_00900 Conserved hypothetical protein	Evidence 4 : Homolgs of previously reported genes of unknown function conserved hypothetical protein; putative membrane protein	conserved hypothetical protein similar to NP_221229.1 hypothetical protein	Putative uncharacterized protein	COG1981 predicted membrane protein	Putative uncharacterized protein	Uncharacterized conserved membrane protein	conserved hypothetical membrane protein	conserved hypothetical protein	
RICPR00831	Ferrochelatase	Ferrochelatase	Ferrochelatase	Ferrochelatase	identified by similarity to EGAD:24790; match to protein family HMM PF00762; match to protein family HMM TIGR00109 ferrochelatase	ferrochelatase	Ferrochelatase	Ferrochelatase	identified by similarity to SP:P56107; match to protein family HMM PF00762; match to protein family HMM TIGR00109 ferrochelatase	protoheme ferro-lyase ferrochelatase	Ferrochelatase	Protoheme ferro-lyase (ferrochelatase)	Similar to Chlamydia pneumoniae ferrochelatase hemH or cpn0603 or cp0144 SWALL:HEMZ_CHLPN (SWALL:Q9Z7V1) (327 aa) fasta scores: E(): 4.2e-76, 58.28% id in 314 aa, and to Escherichia coli ferrochelatase hemH SWALL:HEMZ_ECOLI (SWALL:P23871) (320 aa) fasta scores: E(): 9.8e-15, 27.07% id in 325 aa putative ferrochelatase	Ferrochelatase	ferrochelatase homolog	Probable ferrochelatase	Ortholog of S. aureus MRSA252 (BX571856) SAR1924 ferrochelatase	ferrochelatase homolog	Ferrochelatase	Similar to sp|Q92FV4|HEMZ_RICCN sp|Q9ZC84|HEMZ_RICPR; Ortholog to ERGA_CDS_06400 Ferrochelatase	identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 ferrochelatase	COG0276 HemH protoheme ferro-lyase (ferrochelatase) ferrochelatase	Ferrochelatase	go_component: mitochondrial inner membrane [goid 0005743]; go_function: ferrochelatase activity [goid 0004325]; go_process: heme biosynthesis [goid 0006783] ferrochelatase precursor	probable ferrochelatase	ferrochelatase	Similar to sp|Q92FV4|HEMZ_RICCN sp|Q9ZC84|HEMZ_RICPR; Ortholog to ERWE_CDS_06490 Ferrochelatase	Similar to Bacillus subtilis ferrochelatase HemH SW:HEMZ_BACSU (P32396) (310 aa) fasta scores: E(): 1.6e-73, 62.75% id in 298 aa, and to Bacillus halodurans ferrochelatase BH1203 SW:HEMZ_BACHD (Q9KDK9) (310 aa) fasta scores: E(): 4.2e-70, 60.52% id in 304 aa ferrochelatase	
RICPR00832	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Residues 1 to 354 of 354 are 99 pct identical to residues 1 to 354 of a 354 aa protein from Escherichia coli K12 ref: NP_418425.1 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	conserved gene uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	identified by similarity to EGAD:21032; match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208; match to protein family HMM TIGR01464 uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	Mb2697c, hemE, len: 357 aa. Equivalent to Rv2678c, len: 357 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 357 aa overlap). Probable hemE, uroporphyrinogen decarboxylase (EC 4.1.1.37), equivalent to P46809|DCUP_MYCLE|HEME|ML1043 UROPORPHYRINOGEN DECARBOXYLASE from Mycobacterium leprae (357 aa), FASTA scores: opt: 2017, E(): 8.2e-111, (83.75% identity in 357 aa overlap). Also highly similar to many e.g.  O69861|DCUP_STRCO|HEME|SC1C3.19 from Streptomyces coelicolor (355 aa), FASTA scores: opt: 1165, E(): 5.6e-61, (58.15% identity in 349 aa overlap); P32395|DCUP_BACSU|HEME from Bacillus subtilis (353 aa), FASTA scores: opt: 859, E(): 4.5e-43, (44.1% identity in 356 aa overlap); Q9RV96|DCUP_DEIRA|HEME|DR1133 from Deinococcus radiodurans (344 aa), FASTA scores: opt: 850, E(): 1.5e-42, (43.0% identity in 349 aa overlap); etc.  Equivalent to AAK47067 from Mycobacterium tuberculosis strain CDC1551 (372 aa) but shorter 15 aa. Contains PS00907 Uroporphyrinogen decarboxylase signature 2.  BELONGS TO THE UROPORPHYRINOGEN DECARBOXYLASE FAMILY. PUTATIVE UROPORPHYRINOGEN DECARBOXYLASE HEME (UROPORPHYRINOGEN III DECARBOXYLASE) (URO-D) (UPD)	InterProMatches:IPR006361; Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853), Biological Process: porphyrin biosynthesis (GO:0006779) uroporphyrinogen III decarboxylase	uroporphyrinogen decarboxylase	identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark uroporphyrinogen decarboxylase	Uroporphyrinogen decarboxylase	
